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Eric J. Alm

MIT

96H-index
386Paper Count
8.9WCitation Count
Published Papers 113
Publication Date
An integrated framework for early detection and transmissibility assessment of emerging variants in wastewater
err2026-04-02
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PREAI
errXingwen Chen; Tin Phan; Wei Lin Lee; Katie Clark; Steven F. Rhode; Samantha Brozak; Bruce Pell; Tsultrim Palden; Mats Leifels; Anna Gitter; Yang Kuang; Stefan Wuertz; Janelle Thompson; Kristina D. Mena; Eric J. Alm; Fuqing Wu
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Temporal dynamics and metagenomics of phosphorothioate epigenomes in the human gut microbiome
err2025-03-24
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errOAAI
errByrne, Shane R.; Demott, Michael S.; Yuan, Yifeng; Ghanegolmohammadi, Farzan; Kaiser, Stefanie; Fox, James G.; Alm, Eric J.
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CRISPR-Cas spacer acquisition is a rare event in human gut microbiome
err2025-01-01
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errOAAI
errZhang, An-Ni; Gaston, Jeffry M.; Cardenas, Pablo; Zhao, Shijie; Gu, Xiaoqiong; Alm, Eric J.
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Longitudinal Microbiome Changes in Children Exposed to Proton Pump Inhibitors
err2024-09-01
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errOAAI
errZhang, Yanjia Jason; Connearney, Sarah; Hester, Lisa; Du, Maritha; Catacora, Andrea; Akkara, Anna; Wen, Anna; Bry, Lynn; Alm, Eric J.; Rosen, Rachel
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Higher alpha diversity and Lactobacillus blooms are associated with better engraftment after fecal microbiota transplant in inflammatory bowel disease
err2024-08-06
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errOAAI
errZhang, Yanjia Jason; Bousvaros, Athos; Docktor, Michael; Kaplan, Abby L.; Rufo, Paul A.; Leier, Mckenzie; Weatherly, Madison; Zimmerman, Lori; Nguyen, Le Thanh Tu; Barton, Brenda; Russell, George; Alm, Eric J.; Kahn, Stacy A.
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An immune-competent human gut microphysiological system enables inflammation-modulation by Faecalibacterium prausnitzii
err2024-03-29
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errOAAI
errZhang, Jianbo; Huang, Yu-Ja; Trapecar, Martin; Wright, Charles; Schneider, Kirsten; Kemmitt, John; Hernandez-Gordillo, Victor; Yoon, Jun Young; Poyet, Mathilde; Alm, Eric J.; Breault, David T.; Trumper, David L.; Griffith, Linda G.
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Temporal dynamics of gut microbiomes in non-industrialized urban Amazonia
err2024-03-19
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errOAAI
errSchaan, Ana Paula; Vidal, Amanda; Zhang, An-Ni; Poyet, Mathilde; Alm, Eric J.; Groussin, Mathieu; Ribeiro-dos-Santos, Andrea
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Structured community transitions explain the switching capacity of microbial systems
err2024-01-29
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errOAAI
errLong, Chengyi; Deng, Jie; Nguyen, Jen; Liu, Yang-Yu; Alm, Eric J.; Sole, Ricard; Saavedra, Serguei
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Low-level resource partitioning supports coexistence among functionally redundant bacteria during successional dynamics
err2024-01-10
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errOAAI
errYu, Xiaoqian Annie; McLean, Craig; Hehemann, Jan-Hendrik; Angeles-Albores, David; Wu, Fuqing; Muszynski, Artur; Corzett, Christopher H.; Azadi, Parastoo; Kujawinski, Elizabeth B.; Alm, Eric J.; Polz, Martin F.
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Lectin-Seq: A method to profile lectin-microbe interactions in native communities
err2023-07-28
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errOAAI
errMcPherson, Robert L.; Isabella, Christine R.; Walker, Rebecca L.; Sergio, Dallis; Bae, Sunhee; Gaca, Tony; Raman, Smrithi; Nguyen, Le Thanh Tu; Wesener, Darryl A.; Halim, Melanie; Wuo, Michael G.; Dugan, Amanda; Kerby, Robert; Ghosh, Soumi; Rey, Federico E.; Dhennezel, Catherine; Pishchany, Gleb; Lensch, Valerie; Vlamakis, Hera; Alm, Eric J.; Xavier, Ramnik J.; Kiessling, Laura L.
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Co-incidence of BA.1 and BA.2 at the start of Singapore's Omicron wave revealed by Community and University Campus wastewater surveillance
err2023-06-01
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errOAAI
errChua, Feng Jun Desmond; Kim, Se Yeon; Hill, Eric; Cai, Jia Wei; Lee, Wei Lin; Gu, Xiaoqiong; Affandi, Siti Aisyah Afri; Kwok, Wee Chiew Germaine; Ng, Weijie; Leifels, Mats; Armas, Federica; Chandra, Franciscus; Chen, Hongjie; Alm, Eric J.; Tay, Martin; Wong, Chui Ching Judith; Ng, Lee Ching; Wuertz, Stefan; Thompson, Janelle R.
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Comparing Recovery Methods for Wastewater Surveillance of Arthropod-Borne and Enveloped Viruses
err2023-03-24
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errOAAI
errChandra, Franciscus; Armas, Federica; Kwok, Germaine; Chen, Hongjie; Chua, Feng Jun Desmond; Leifels, Mats; Amir-Hamzah, Nabil; Gu, Xiaoqiong; Wuertz, Stefan; Lee, Wei Lin; Alm, Eric J.; Thompson, Janelle
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Contextualizing Wastewater-Based surveillance in the COVID-19 vaccination era
err2023-01-01
err11
errOAAI
errArmas, Federica; Chandra, Franciscus; Lee, Wei Lin; Gu, Xiaoqiong; Chen, Hongjie; Xiao, Amy; Leifels, Mats; Wuertz, Stefan; Alm, Eric J.; Thompson, Janelle
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Wastewater to clinical case (WC) ratio of COVID-19 identifies insufficient clinical testing, onset of new variants of concern and population immunity in urban communities
err2022-12-01
err27
errOAAI
errD'Aoust, Patrick M.; Tian, Xin; Towhid, Syeda Tasneem; Xiao, Amy; Mercier, Elisabeth; Hegazy, Nada; Jia, Jian-Jun; Wan, Shen; Kabir, Md Pervez; Fang, Wanting; Fuzzen, Meghan; Hasing, Maria; Yang, Minqing Ivy; Sun, Jianxian; Plaza-Diaz, Julio; Zhang, Zhihao; Cowan, Aaron; Eid, Walaa; Stephenson, Sean; Servos, Mark R.; Wade, Matthew J.; MacKenzie, Alex E.; Peng, Hui; Edwards, Elizabeth A.; Pang, Xiao-Li; Alm, Eric J.; Graber, Tyson E.; Delatolla, Robert
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Monitoring human arboviral diseases through wastewater surveillance: Challenges, progress and future opportunities
err2022-09-01
err36
PREAI
errLee, Wei Lin; Gu, Xiaoqiong; Armas, Federica; Leifels, Mats; Wu, Fuqing; Chandra, Franciscus; Chua, Feng Jun Desmond; Syenina, Ayesa; Chen, Hongjie; Cheng, Dan; Ooi, Eng Eong; Wuertz, Stefan; Alm, Eric J.; Thompson, Janelle
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Rapid displacement of SARS-CoV-2 variant Delta by Omicron revealed by allele-specific PCR in wastewater
err2022-08-01
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errOAAI
errLee, Wei Lin; Armas, Federica; Guarneri, Flavia; Gu, Xiaoqiong; Formenti, Nicoletta; Wu, Fuqing; Chandra, Franciscus; Parisio, Giovanni; Chen, Hongjie; Xiao, Amy; Romeo, Claudia; Scali, Federico; Tonni, Matteo; Leifels, Mats; Chua, Feng Jun Desmond; Kwok, Germaine Wc; Tay, Joey Yr; Pasquali, Paolo; Thompson, Janelle; Alborali, Giovanni Loris; Alm, Eric J.
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Making waves: Wastewater surveillance of SARS-CoV-2 in an endemic future
err2022-07-01
err47
errOAAI
errWu, Fuqing; Lee, Wei Lin; Chen, Hongjie; Gu, Xiaoqiong; Chandra, Franciscus; Armas, Federica; Xiao, Amy; Leifels, Mats; Rhode, Steven F.; Wuertz, Stefan; Thompson, Janelle; Alm, Eric J.
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Development of an efficient wastewater testing protocol for high-throughput country-wide SARS-CoV-2 monitoring
err2022-06-01
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errOAAI
errMailepessov, Diyar; Arivalan, Sathish; Kong, Marcella; Griffiths, Jane; Low, Swee Ling; Chen, Hongjie; Hapuarachchi, Hapuarachchige Chanditha; Gu, Xiaoqiong; Lee, Wei Lin; Alm, Eric J.; Thompson, Janelle; Wuertz, Stefan; Gin, Karina; Ng, Lee Ching; Wong, Judith Chui Ching
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Nationwide Trends in COVID-19 Cases and SARS-CoV-2 RNA Wastewater Concentrations in the United States
err2022-05-03
err52
errOAAI
errDuvallet, Claire; Wu, Fuqing; McElroy, Kyle A.; Imakaev, Maxim; Endo, Noriko; Xiao, Amy; Zhang, Jianbo; Floyd-O'Sullivan, Roisin; Powell, Morgan M.; Mendola, Samuel; Wilson, Shane T.; Cruz, Francis; Melman, Tamar; Sathyanarayana, Chaithra Lakshmi; Olesen, Scott W.; Erickson, Timothy B.; Ghaeli, Newsha; Chai, Peter; Alm, Eric J.; Matus, Mariana
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