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E

Erin K. Molloy

university of maryland

20H-index
90Paper Count
3.3KCitation Count
Published Papers 21
Publication Date
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Long-read sequencing of single cell-derived melanoma sublines reveals divergent and parallel genomic and epigenomic evolutionary trajectories
errNature Communications
IF15.7
err2026-07-16
err0
errOAAI
errYuelin Liu; Anton Goretsky; Ayse G. Keskus; Salem Malikic; Tanveer Ahmad; E. Michael Gertz; Farid Rashidi Mehrabadi; Michael Kelly; Maria O. Hernandez; Charlie Seibert; Juan Manuel Caravaca; Kayla Kline; Yongmei Zhao; Ying Wu; Biraj Shrestha; Bao Tran; Arindam Ghosh; Xiwen Cui; Antonella Sassano; Laksh Malik; Breeana Baker; Cornelis Blauwendraat; Kimberley J. Billingsley; Sandra Burkett; Eva Perez-Guijarro; Glenn Merlino; Erin K. Molloy; S. Cenk Sahinalp; Chi-Ping Day; Mikhail Kolmogorov
errShare
errSave
Situational Awareness of Sepsis by Residents in a Virtual Reality Simulation
errAcademic Pediatrics
IF2.8
err2026-03-13
err0
PREAI
errErin Molloy; Daniel Loeb; Andrea Meisman; Rashmi D. Sahay; Bin Zhang; Matthew Zackoff
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errSave
Spatial transcriptomics and artificial intelligence: a scoping review of emerging applications in head and neck pathology
errHead and Neck Pathology
IF4.1
err2026-03-04
err0
errOAAI
errNajwa Yousef; Wenshan Wu; Shahd Alajaji; Akshya Mahadevan; Ahmed S. Sultan; Erin K. Molloy; Joe T. Nguyen
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errSave
StarCDP: Dynamic Programming Algorithms for Fast and Accurate Cell Lineage Tree Reconstruction from CRISPR-Based Lineage Tracing Data
errJOURNAL OF COMPUTATIONAL BIOLOGY
IF1.6
err2025-10-01
err0
PREAI
errDai, Junyan; Molloy, Erin K.
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errSave
Enhanced barrier precautions to prevent transmission of Staphylococcus aureus and Carbapenem-resistant organisms in nursing home chronic ventilator units
errINFECTION CONTROL & HOSPITAL EPIDEMIOLOGY
IF2.9
err2025-08-01
err0
PREAI
errO'Hara, Lyndsay M.; Newman, Michelle; Lydecker, Alison D.; Robinson, Gwen L.; Hong, Aaron; Boucher, Christina; Osei, Patience; Molloy, Erin K.; Johnson, J. Kristie; Gurses, Ayse P.; Jones, Heather; Slifka, Kara Jacobs; Roghmann, Mary-Claire
errShare
errSave
Severus detects somatic structural variation and complex rearrangements in cancer genomes using long-read sequencing
errNATURE BIOTECHNOLOGY
IF41.7
err2025-04-04
err1
PREAI
errKeskus, Ayse G.; Bryant, Asher; Ahmad, Tanveer; Yoo, Byunggil; Aganezov, Sergey; Goretsky, Anton; Donmez, Ataberk; Lansdon, Lisa A.; Rodriguez, Isabel; Park, Jimin; Liu, Yuelin; Cui, Xiwen; Gardner, Joshua; McNulty, Brandy; Sacco, Samuel; Shetty, Jyoti; Zhao, Yongmei; Tran, Bao; Narzisi, Giuseppe; Helland, Adrienne; Cook, Daniel E.; Chang, Pi-Chuan; Kolesnikov, Alexey; Carroll, Andrew; Molloy, Erin K.; Bi, Chengpeng; Walter, Adam; Gibson, Margaret; Pushel, Irina; Guest, Erin; Pastinen, Tomi; Shafin, Kishwar; Miga, Karen H.; Malikic, Salem; Day, Chi-Ping; Robine, Nicolas; Sahinalp, Cenk; Dean, Michael; Farooqi, Midhat S.; Paten, Benedict; Kolmogorov, Mikhail
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errSave
Improved Robustness to Gene Tree Incompleteness, Estimation Errors, and Systematic Homology Errors with Weighted TREE-QMC
errSYSTEMATIC BIOLOGY
IF5.7
err2025-02-25
err0
errOAAI
errHan, Yunheng; Molloy, Erin K.
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errSave
Stochastic modeling of single-cell gene expression adaptation reveals non-genomic contribution to evolution of tumor subclones
errCELL SYSTEMS
IF7.7
err2025-01-01
err1
errOAAI
errHirsch, M. G.; Pal, Soumitra; Mehrabadi, Farid Rashidi; Malikic, Salem; Gruen, Charli; Sassano, Antonella; Perez-Guijarro, Eva; Merlino, Glenn; Sahinalp, S. Cenk; Molloy, Erin K.; Day, Chi-Ping; Przytycka, Teresa M.
errShare
errSave
Genetic and behavioral differences between above and below ground Culex pipiens bioforms
errHEREDITY
IF3.9
err2024-02-29
err2
PREAI
errBell, Katherine L.; Noreuil, Anna; Molloy, Erin K.; Fritz, Megan L.
errShare
errSave
Assessment of plasmids for relating the 2020 Salmonella enterica serovar Newport onion outbreak to farms implicated by the outbreak investigation
errBMC GENOMICS
IF3.7
err2023-04-04
err7
errOAAI
errCommichaux, Seth; Rand, Hugh; Javkar, Kiran; Molloy, Erin K.; Pettengill, James B.; Pightling, Arthur; Hoffmann, Maria; Pop, Mihai; Jayeola, Victor; Foley, Steven; Luo, Yan
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errSave
Single-cell methylation sequencing data reveals succinct metastatic migration histories and tumor progression models
errCANCER RESEARCH
IF16.6
err2023-04-04
err0
PREAI
errLi, Xuan C.; Liu, Yuelin; Mehrabadi, Farid Rashidi; Schaffer, Alejandro A.; Pratt, Drew; Crawford, David R.; Malikic, Salem; Molloy, Erin K.; Gopalan, Vishaka; Mount, Stephen M.; Ruppin, Eytan; Aldape, Kenneth; Sahinalp, S. Cenk
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errSave
Inferring population structure in biobank-scale genomic data
errAMERICAN JOURNAL OF HUMAN GENETICS
IF8.1
err2022-04-01
err15
errOAAI
errChiu, Alec M.; Molloy, Erin K.; Tan, Zilong; Talwalkar, Ameet; Sankararaman, Sriram
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errSave
Theoretical and Practical Considerations when using Retroelement Insertions to Estimate Species Trees in the Anomaly Zone
errSYSTEMATIC BIOLOGY
IF5.7
err2021-10-22
err10
errOAAI
errMolloy, Erin K.; Gatesy, John; Springer, Mark S.
errShare
errSave
ASTRAL-Pro: Quartet-Based Species-Tree Inference despite Paralogy (vol 37, pg 3292, 2020)
errMOLECULAR BIOLOGY AND EVOLUTION
IF5.3
err2021-08-21
err0
errOAAI
errZhang, Chao; Scornavacca, Celine; Molloy, Erin K.; Mirarab, Siavash
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errSave
Using Constrained-INC for Large-Scale Gene Tree and Species Tree Estimation
errIEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS
IF3.4
err2021-01-01
err4
errOAAI
errLe, Thien; Sy, Aaron; Molloy, Erin K.; Zhang, Qiuyi; Rao, Satish; Warnow, Tandy
errShare
errSave
ASTRAL-Pro: Quartet-Based Species-Tree Inference despite Paralogy
errMOLECULAR BIOLOGY AND EVOLUTION
IF5.3
err2020-09-04
err122
errOAAI
errZhang, Chao; Scornavacca, Celine; Molloy, Erin K.; Mirarab, Siavash
errShare
errSave
The performance of coalescent-based species tree estimation methods under models of missing data (vol 19, 286, 2018)
errBMC GENOMICS
IF3.7
err2020-02-10
err1
errOAAI
errNute, Michael; Chou, Jed; Molloy, Erin K.; Warnow, Tandy
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errSave
ILS-Aware Analysis of Low-Homoplasy Retroelement Insertions: Inference of Species Trees and Introgression Using Quartets
errJOURNAL OF HEREDITY
IF2.5
err2019-12-14
err29
errOAAI
errSpringer, Mark S.; Molloy, Erin K.; Sloan, Daniel B.; Simmons, Mark P.; Gatesy, John
errShare
errSave
The performance of coalescent-based species tree estimation methods under models of missing data
errBMC GENOMICS
IF3.7
err2018-05-08
err71
errOAAI
errNute, Michael; Chou, Jed; Molloy, Erin K.; Warnow, Tandy
errShare
errSave
To Include or Not to Include: The Impact of Gene Filtering on Species Tree Estimation Methods
errSYSTEMATIC BIOLOGY
IF5.7
err2017-09-15
err158
errOAAI
errMolloy, Erin K.; Warnow, Tandy
errShare
errSave

Research Directions

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Co-authors
Cooperation Journals
K
Kenneth Aldape
H-index: 141 · Papers: 1.1K
M
Michael Dean
H-index: 119 · Papers: 883
B
Benedict Paten
H-index: 95 · Papers: 355
G
Glenn Merlino
H-index: 87 · Papers: 378
A
Alejandro A. Schäffer
H-index: 79 · Papers: 711
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