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Human milk variation is shaped by maternal genetics and impacts the infant gut microbiome Johnson, Kelsey E.; Heisel, Timothy; Allert, Mattea; Fueurorst, Annalee; Yerabandi, Nikhila; Knights, Dan; Jacobs, Katherine M.; Lock, Eric F.; Bode, Lars; Fields, David A.; Rudolph, Michael C.; Gale, Cheryl A.; Albert, Frank W.; Demerath, Ellen W.; Blekhman, Ran Share Save
Maternal oral probiotic use is associated with decreased breastmilk inflammatory markers, infant fecal microbiome variation, and altered recognition memory responses in infants-a pilot observational study Gonia, Sara; Heisel, Timothy; Miller, Neely; Haapala, Jacob; Harnack, Lisa; Georgieff, Michael K.; Fields, David A.; Knights, Dan; Jacobs, Katherine; Seburg, Elisabeth; Demerath, Ellen W.; Gale, Cheryl A.; Swanson, Marie H. Share Save
Human cytomegalovirus in breast milk is associated with milk composition and the infant gut microbiome and growth Johnson, Kelsey E.; Hernandez-Alvarado, Nelmary; Blackstad, Mark; Heisel, Timothy; Allert, Mattea; Fields, David A.; Isganaitis, Elvira; Jacobs, Katherine M.; Knights, Dan; Lock, Eric F.; Rudolph, Michael C.; Gale, Cheryl A.; Schleiss, Mark R.; Albert, Frank W.; Demerath, Ellen W.; Blekhman, Ran Share Save
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Industrialized human gut microbiota increases CD8+T cells and mucus thickness in humanized mouse gut Vangay, Pajau; Ward, Tonya; Lucas, Sarah; Beura, Lalit K.; Sabas, Dominique; Abramson, Max; Till, Lisa; Hoops, Susan L.; Kashyap, Purna; Hunter, Ryan C.; Masopust, David; Knights, Dan Share Save
Successful weight regain attenuation by autologous fecal microbiota transplantation is associated with non-core gut microbiota changes during weight loss; randomized controlled trial Kamer, Omer; Rinott, Ehud; Tsaban, Gal; Kaplan, Alon; Meir, Anat Yaskolka; Zelicha, Hila; Knights, Dan; Tuohy, Kieran; Fava, Francesca; Scholz, Matthias Uwe; Ziv, Oren; Rubin, Elad; Blueher, Matthias; Stumvoll, Michael; Ceglarek, Uta; Clement, Karine; Koren, Omry; Hu, Frank B.; Stampfer, Meir J.; Wang, Dong D.; Youngster, Ilan; Shai, Iris Share Save
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Bacterial, fungal, and interkingdom microbiome features of exclusively breastfeeding dyads are associated with infant age, antibiotic exposure, and birth mode Heisel, Timothy; Johnson, Abigail J.; Gonia, Sara; Dillon, Abrielle; Skalla, Emily; Haapala, Jacob; Jacobs, Katherine M.; Nagel, Emily; Pierce, Stephanie; Fields, David; Demerath, Ellen; Knights, Dan; Gale, Cheryl A. Share Save
Elucidating the role of the gut microbiota in the physiological effects of dietary fiber Deehan, Edward C.; Zhang, Zhengxiao; Riva, Alessandra; Armet, Anissa M.; Perez-Munoz, Maria Elisa; Nguyen, Nguyen K.; Krysa, Jacqueline A.; Seethaler, Benjamin; Zhao, Yuan-Yuan; Cole, Janis; Li, Fuyong; Hausmann, Bela; Spittler, Andreas; Nazare, Julie-Anne; Delzenne, Nathalie M.; Curtis, Jonathan M.; Wismer, Wendy, V; Proctor, Spencer D.; Bakal, Jeffrey A.; Bischoff, Stephan C.; Knights, Dan; Field, Catherine J.; Berry, David; Prado, Carla M.; Walter, Jens Share Save
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Reporting guidelines for human microbiome research: the STORMS checklist Mirzayi, Chloe; Renson, Audrey; Zohra, Fatima; Elsafoury, Shaimaa; Geistlinger, Ludwig; Kasselman, Lora J.; Eckenrode, Kelly; van de Wijgert, Janneke; Loughman, Amy; Marques, Francine Z.; MacIntyre, David A.; Arumugam, Manimozhiyan; Azhar, Rimsha; Beghini, Francesco; Bergstrom, Kirk; Bhatt, Ami; Bisanz, Jordan E.; Braun, Jonathan; Bravo, Hector Corrada; Buck, Gregory A.; Bushman, Frederic; Casero, David; Clarke, Gerard; Carmen Collado, Maria; Cotter, Paul D.; Cryan, John F.; Demmer, Ryan T.; Devkota, Suzanne; Elinav, Eran; Escobar, Juan S.; Fettweis, Jennifer; Finn, Robert D.; Fodor, Anthony A.; Forslund, Sofia; Franke, Andre; Furlanello, Cesare; Gilbert, Jack; Grice, Elizabeth; Haibe-Kains, Benjamin; Handley, Scott; Herd, Pamela; Holmes, Susan; Jacobs, Jonathan P.; Karstens, Lisa; Knight, Rob; Knights, Dan; Koren, Omry; Kwon, Douglas S.; Langille, Morgan; Lindsay, Brianna; McGovern, Dermot; McHardy, Alice C.; McWeeney, Shannon; Mueller, Noel T.; Nezi, Luigi; Olm, Matthew; Palm, Noah; Pasolli, Edoardo; Raes, Jeroen; Redinbo, Matthew R.; Ruhlemann, Malte; Sartor, R. Balfour; Schloss, Patrick D.; Schriml, Lynn; Segal, Eran; Shardell, Michelle; Sharpton, Thomas; Smirnova, Ekaterina; Sokol, Harry; Sonnenburg, Justin L.; Srinivasan, Sujatha; Thingholm, Louise B.; Turnbaugh, Peter J.; Upadhyay, Vaibhav; Walls, Ramona L.; Wilmes, Paul; Yamada, Takuji; Zeller, Georg; Zhang, Mingyu; Zhao, Ni; Zhao, Liping; Bao, Wenjun; Culhane, Aedin; Devanarayan, Viswanath; Dopazo, Joaquin; Fan, Xiaohui; Fischer, Matthias; Jones, Wendell; Kusko, Rebecca; Mason, Christopher E.; Mercer, Tim R.; Sansone, Susanna-Assunta; Scherer, Andreas; Shi, Leming; Thakkar, Shraddha; Tong, Weida; Wolfinger, Russ; Hunter, Christopher; Segata, Nicola; Huttenhower, Curtis; Dowd, Jennifer B.; Jones, Heidi E.; Waldron, Levi Share Save
Heuristic and Hierarchical-Based Population Mining of Salmonella enterica Lineage I Pan-Genomes as a Platform to Enhance Food Safety Gomes-Neto, Joao Carlos; Pavlovikj, Natasha; Cano, Carmen; Abdalhamid, Baha; Al-Ghalith, Gabriel Asad; Loy, John Dustin; Knights, Dan; Iwen, Peter C.; Chaves, Byron D.; Benson, Andrew K. Share Save
Multi-Omics Analyses Show Disease, Diet, and Transcriptome Interactions With the Virome Mihindukulasuriya, Kathie A.; Mars, Ruben A. T.; Johnson, Abigail J.; Ward, Tonya; Priya, Sambhawa; Lekatz, Heather R.; Kalari, Krishna R.; Droit, Lindsay; Zheng, Tenghao; Blekhman, Ran; D'Amato, Mauro; Farrugia, Gianrico; Knights, Dan; Handley, Scott A.; Kashyap, Purna C. Share Save
Saliva Testing Is Accurate for Early-Stage and Presymptomatic COVID-19 Johnson, Abigail J.; Zhou, Shannon; Hoops, Susan L.; Hillmann, Benjamin; Schomaker, Matthew; Kincaid, Robyn; Daniel, Jerry; Beckman, Kenneth; Gohl, Daryl M.; Yohe, Sophia; Knights, Dan; Nelson, Andrew C. Share Save
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