Not logged in Strain-level transmission inference across multi-kingdom metagenomic data using TRACS Tonkin-Hill, Gerry; Shao, Yan; Zarebski, Alexander E.; Mallawaarachchi, Sudaraka; Xie, Ouli; Maklin, Tommi; Thorpe, Harry A.; Davies, Mark R.; Bentley, Stephen D.; Lawley, Trevor D.; Corander, Jukka Share Save
Identification of transporter-dependent capsular loci associated with the invasive potential of Escherichia coli Gladstone, Rebecca A.; Pesonen, Maiju; Pontinen, Anna K.; Maklin, Tommi; Macalasdair, Neil; Thorpe, Harry; Shao, Yan; Mallawaarachchi, Sudaraka; Arredondo-Alonso, Sergio; Parcell, Benjamin J.; Turnbull, Jake David; Tonkin-hill, Gerry; Johnsen, Pal J.; Samuelsen, Orjan; Thomson, Nicholas R.; Lawley, Trevor; Corander, Jukka Share Save
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Seamless, rapid, and accurate analyses of outbreak genomic data using split k-mer analysis Derelle, Romain; von Wachsmann, Johanna; Maklin, Tommi; Hellewell, Joel; Russell, Timothy; Lalvani, Ajit; Chindelevitch, Leonid; Croucher, Nicholas J.; Harris, Simon R.; Lees, John A. Share Save
Deep sequencing of Escherichia coli exposes colonisation diversity and impact of antibiotics in Punjab, Pakistan Khawaja, Tamim; Maklin, Tommi; Kallonen, Teemu; Gladstone, Rebecca A.; Pontinen, Anna K.; Mero, Sointu; Thorpe, Harry A.; Samuelsen, Orjan; Parkhill, Julian; Izhar, Mateen; Akhtar, M. Waheed; Corander, Jukka; Kantele, Anu Share Save
Exploring the pediatric nasopharyngeal bacterial microbiota with culture-based MALDI-TOF mass spectrometry and targeted metagenomic sequencing Pol, Sreymom; Kallonen, Teemu; Maeklin, Tommi; Sar, Poda; Hopkins, Jill; Soeng, Sona; Miliya, Thyl; Ling, Clare L.; Bentley, Stephen D.; Corander, Jukka; Turner, Paul Share Save
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Strong pathogen competition in neonatal gut colonisation Maklin, Tommi; Thorpe, Harry A.; Pontinen, Anna K.; Gladstone, Rebecca A.; Shao, Yan; Pesonen, Maiju; McNally, Alan; Johnsen, Pal J.; Samuelsen, Orjan; Lawley, Trevor D.; Honkela, Antti; Corander, Jukka Share Save
Genomic and Phenotypic Characterization of Clostridium botulinum Isolates from an Infant Botulism Case Suggests Adaptation Signatures to the Gut Douillard, Francois P.; Derman, Yagmur; Woudstra, Cedric; Selby, Katja; Maklin, Tommi; Dorner, Martin B.; Saxen, Harri; Dorner, Brigitte G.; Korkeala, Hannu; Lindstrom, Miia Share Save
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