Simon R. Harris - Publications, H-index & Citations

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Simon R. Harris

wellcome trust sanger institute

88H-index

309Paper Count

3.8WCitation Count

Published Papers 141

Publication Date

Seamless, rapid, and accurate analyses of outbreak genomic data using split k-mer analysis

GENOME RESEARCH

IF5.5

2024-10-15

OAAI

Derelle, Romain; von Wachsmann, Johanna; Maklin, Tommi; Hellewell, Joel; Russell, Timothy; Lalvani, Ajit; Chindelevitch, Leonid; Croucher, Nicholas J.; Harris, Simon R.; Lees, John A.

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Discovery and exploration of a live bacterial consortium as co-therapy to enhance immune checkpoint inhibitor response in melanoma patients

ANNALS OF ONCOLOGY

IF65.4

2022-09-01

OAAI

Robinson, M. J.; Vervier, K.; Harris, S.; Popple, A.; Klisko, D.; Hudson, R.; Bakdash, G.; Villemin, C.; Booth, C.; Adams, D.; Welsh, S. J.; Corrie, P. G.; Lawley, T.

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The MITRE trial protocol: a study to evaluate the microbiome as a biomarker of efficacy and toxicity in cancer patients receiving immune checkpoint inhibitor therapy

BMC CANCER

IF3.4

2022-01-24

OAAI

Thompson, Nicola A.; Stewart, Grant D.; Welsh, Sarah J.; Doherty, Gary J.; Robinson, Matthew J.; Neville, B. Anne; Vervier, Kevin; Harris, Simon R.; Adams, David J.; Dalchau, Katy; Bruce, David; Demiris, Nikolaos; Lawley, Trevor D.; Corrie, Pippa G.

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Mycobacterium tuberculosis complex lineage 5 exhibits high levels of within-lineage genomic diversity and differing gene content compared to the type strain H37Rv

MICROBIAL GENOMICS

IF4

2021-07-28

OAAI

Sanoussi, C. N'Dira; Coscolla, Mireia; Ofori-Anyinam, Boatema; Otchere, Isaac Darko; Antonio, Martin; Niemann, Stefan; Parkhill, Julian; Harris, Simon; Yeboah-Manu, Dorothy; Gagneux, Sebastien; Rigouts, Leen; Affolabi, Dissou; de Jong, Bouke C.; Meehan, Conor J.

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Globetrotting strangles: the unbridled national and international transmission of Streptococcus equi between horses

MICROBIAL GENOMICS

IF4

2021-03-01

OAAI

Mitchell, Catriona; Steward, Karen F.; Charbonneau, Amelia R. L.; Walsh, Saoirse; Wilson, Hayley; Timoney, John F.; Wernery, Ulli; Joseph, Marina; Craig, David; van Maanen, Kees; Hoogkamer- van Gennep, Annelies; Leon, Albertine; Witkowski, Lucjan; Rzewuska, Magdalena; Stefanska, Ilona; Zychska, Monika; van Loon, Gunther; Cursons, Ray; Patty, Olivia; Acke, Els; Gilkerson, James R.; El-Hage, Charles; Allen, Joanne; Bannai, Hiroshi; Kinoshita, Yuta; Niwa, Hidekazu; Becu, Teotimo; Pringle, John; Guss, Bengt; Bose, Reinhard; Abbott, Yvonne; Katz, Lisa; Leggett, Bernadette; Buckley, Tom C.; Blum, Shlomo E.; Lopez, Fatima Cruz; Ros, Ana Fernandez; Campi, Maria Cristina Marotti; Preziuso, Silvia; Robinson, Carl; Newton, J. Richard; Schofield, Ellen; Brooke, Ben; Boursnell, Mike; de Brauwere, Nicolas; Kirton, Roxane; Barton, Charlotte K.; Abudahab, Khalil; Taylor, Ben; Yeats, Corin A.; Goater, Richard; Aanensen, David M.; Harris, Simon R.; Parkhill, Julian; Holden, Matthew T. G.; Waller, Andrew S.

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Phylogenomics of Mycobacterium africanum reveals a new lineage and a complex evolutionary history

MICROBIAL GENOMICS

IF4

2021-02-01

105

OAAI

Coscolla, Mireia; Gagneux, Sebastien; Menardo, Fabrizio; Loiseau, Chloe; Ruiz-Rodriguez, Paula; Borrell, Sonia; Otchere, Isaac Darko; Asante-Poku, Adwoa; Asare, Prince; Sanchez-Buso, Leonor; Gehre, Florian; Sanoussi, C. N'Dira; Antonio, Martin; Affolabi, Dissou; Fyfe, Janet; Beckert, Patrick; Niemann, Stefan; Alabi, Abraham S.; Grobusch, Martin P.; Kobbe, Robin; Parkhill, Julian; Beisel, Christian; Fenner, Lukas; Bottger, Erik C.; Meehan, Conor J.; Harris, Simon R.; de Jong, Bouke C.; Yeboah-Manu, Dorothy; Brites, Daniela

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PRECISION MICROBIOME MAPPING IDENTIFIES A MICROBIOME SIGNATURE PREDICTIVE OF IMMUNE CHECKPOINT INHIBITOR RESPONSE ACROSS MULTIPLE RESEARCH STUDY COHORTS

JOURNAL FOR IMMUNOTHERAPY OF CANCER

IF10.6

2020-11-09

OAAI

Robinson, Matthew; Vervier, Kevin; Harris, Simon; Adams, David; Milne, Doreen; Booth, Catherine; Barker, Emily; Parkinson, Christine; Bruce, David; Welesh, Sarah; Corrie, Pippa; Lawley, Trevor

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The Distribution and Spread of Susceptible and Resistant Neisseria gonorrhoeae Across Demographic Groups in a Major Metropolitan Center

CLINICAL INFECTIOUS DISEASES

IF7.3

2020-08-23

OAAI

Mortimer, Tatum D.; Pathela, Preeti; Crawley, Addie; Rakeman, Jennifer L.; Lin, Ying; Harris, Simon R.; Blank, Susan; Schillinger, Julia A.; Grad, Yonatan H.

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Adaptation to the cervical environment is associated with increased antibiotic susceptibility in Neisseria gonorrhoeae

NATURE COMMUNICATIONS

IF15.7

2020-08-17

OAAI

Ma, Kevin C.; Mortimer, Tatum D.; Hicks, Allison L.; Wheeler, Nicole E.; Sanchez-Buso, Leonor; Golparian, Daniel; Taiaroa, George; Rubin, Daniel H. F.; Wang, Yi; Williamson, Deborah A.; Unemo, Magnus; Harris, Simon R.; Grad, Yonatan H.

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Phylogenomic analysis of Neisseria gonorrhoeae transmission to assess sexual mixing and HIV transmission risk in England: a cross-sectional, observational, whole-genome sequencing study

LANCET INFECTIOUS DISEASES

IF31

2020-04-01

OAAI

Town, Katy; Field, Nigel; Harris, Simon R.; Sanchez-Buso, Leonor; Cole, Michelle J.; Pitt, Rachel; Fifer, Helen; Mohammed, Hamish; Hughes, Gwenda

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Genomic and Phenotypic Variability in Neisseria gonorrhoeae Antimicrobial Susceptibility, England

EMERGING INFECTIOUS DISEASES

IF6.6

2020-03-01

OAAI

Town, Katy; Harris, Simon; Sanchez-Buso, Leonor; Cole, Michelle J.; Pitt, Rachel; Fifer, Helen; Mohammed, Hamish; Field, Nigel; Hughes, Gwenda

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Genomic evolution of Neisseria gonorrhoeae since the preantibiotic era (1928-2013): antimicrobial use/misuse selects for resistance and drives evolution

BMC GENOMICS

IF3.7

2020-02-03

OAAI

Golparian, Daniel; Harris, Simon R.; Sanchez-Buso, Leonor; Hoffmann, Steen; Shafer, William M.; Bentley, Stephen D.; Jensen, Jorgen S.; Unemo, Magnus

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Evolution and Global Transmission of a Multidrug-Resistant, Community-Associated Methicillin-Resistant Staphylococcus aureus Lineage from the Indian Subcontinent

MBIO

IF4.7

2019-12-24

OAAI

Steinig, Eike J.; Duchene, Sebastian; Robinson, D. Ashley; Monecke, Stefan; Yokoyama, Maho; Laabei, Maisem; Slickers, Peter; Andersson, Patiyan; Williamson, Deborah; Kearns, Angela; Goering, Richard V.; Dickson, Elizabeth; Ehricht, Ralf; Ip, Margaret; O'Sullivan, Matthew V. N.; Coombs, Geoffrey W.; Petersen, Andreas; Brennan, Grainne; Shore, Anna C.; Coleman, David C.; Pantosti, Annalisa; de Lencastre, Herminia; Westh, Henrik; Kobayashi, Nobumichi; Heffernan, Helen; Strommenger, Birgit; Layer, Franziska; Weber, Stefan; Aamot, Hege Vangstein; Skakni, Leila; Peacock, Sharon J.; Sarovich, Derek; Harris, Simon; Parkhill, Julian; Massey, Ruth C.; Holden, Mathew T. G.; Bentley, Stephen D.; Tong, Steven Y. C.

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Genetic variation associated with infection and the environment in the accidental pathogen Burkholderia pseudomallei

COMMUNICATIONS BIOLOGY

IF5.1

2019-11-22

OAAI

Chewapreecha, Claire; Mather, Alison E.; Harris, Simon R.; Hunt, Martin; Holden, Matthew T. G.; Chaichana, Chutima; Wuthiekanun, Vanaporn; Dougan, Gordon; Day, Nicholas P. J.; Limmathurotsakul, Direk; Parkhill, Julian; Peacock, Sharon J.

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Genetic variation regulates the activation and specificity of Restriction-Modification systems in Neisseria gonorrhoeae

SCIENTIFIC REPORTS

IF3.9

2019-10-11

OAAI

Sanchez-Buso, Leonor; Golparian, Daniel; Parkhill, Julian; Unemo, Magnus; Harris, Simon R.

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Genome-wide epistasis and co-selection study using mutual information

NUCLEIC ACIDS RESEARCH

IF13.1

2019-07-30

OAAI

Pensar, Johan; Puranen, Santeri; Arnold, Brian; MacAlasdair, Neil; Kuronen, Juri; Tonkin-Hill, Gerry; Pesonen, Maiju; Xu, Yingying; Sipola, Aleksi; Sanchez-Buso, Leonor; Lees, John A.; Chewapreechi, Claire; Bentley, Stephen D.; Harris, Simon R.; Parkhill, Julian; Croucher, Nicholas J.; Corander, Jukka

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Atlas of group A streptococcal vaccine candidates compiled using large-scale comparative genomics (vol 51, pg 1035, 2019)

NATURE GENETICS

IF31.8

2019-07-19

OAAI

Davies, Mark R.; McIntyre, Liam; Mutreja, Ankur; Lacey, Jake A.; Lees, John A.; Towers, Rebecca J.; Duchene, Sebastian; Smeesters, Pierre R.; Frost, Hannah R.; Price, David J.; Holden, Matthew T. G.; David, Sophia; Giffard, Philip M.; Worthing, Kate A.; Seale, Anna C.; Berkley, James A.; Harris, Simon R.; Rivera-Hernandez, Tania; Berking, Olga; Cork, Amanda J.; Torres, Rosangela S. L. A.; Lithgow, Trevor; Strugnell, Richard A.; Bergmann, Rene; Nitsche-Schmitz, Patric; Chhatwal, Gusharan S.; Bentley, Stephen D.; Fraser, John D.; Moreland, Nicole J.; Carapetis, Jonathan R.; Steer, Andrew C.; Parkhill, Julian; Saul, Allan; Williamson, Deborah A.; Currie, Bart J.; Tong, Steven Y. C.; Dougan, Gordon; Walker, Mark J.

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Genomic determinants of speciation and spread of the Mycobacterium tuberculosis complex

SCIENCE ADVANCES

IF12.5

2019-06-01

OAAI

Chiner-Oms, A.; Sanchez-Buso, L.; Corander, J.; Gagneux, S.; Harris, S. R.; Young, D.; Gonzalez-Candelas, F.; Comas, I.

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Atlas of group A streptococcal vaccine candidates compiled using large-scale comparative genomics

NATURE GENETICS

IF31.8

2019-05-27

130

OAAI

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Three phylogenetic groups have driven the recent population expansion of Cryptococcus neoformans

NATURE COMMUNICATIONS

IF15.7

2019-05-02

OAAI

Ashton, P. M.; Thanh, L. T.; Trieu, P. N.; Van Anh, D.; Trinh, N. M.; Beardsley, J.; Kibengo, F.; Chierakul, W.; Dance, D. A. B.; Rattanavong, S.; Davong, V; Hung, L. Q.; Chau, N. V. V.; Tung, N. L. N.; Chan, A. K.; Thwaites, G. E.; Lalloo, D. G.; Anscombe, C.; Nhat, L. T. H.; Perfect, J.; Dougan, G.; Baker, S.; Harris, S.; Day, J. N.

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Research Directions