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A machine learning-based chemoproteomic approach to identify drug targets and binding sites in complex proteomes Piazza, Ilaria; Beaton, Nigel; Bruderer, Roland; Knobloch, Thomas; Barbisan, Crystel; Chandat, Lucie; Sudau, Alexander; Siepe, Isabella; Rinner, Oliver; de Souza, Natalie; Picotti, Paola; Reiter, Lukas Share Save
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Unbiased phospho-proteomic profiling of mouse breast cancer models with DIA mass spectrometry refines CanPath prototype, a platform for predictive cancer pathway modeling Bober, Magdalena; Banko-Bielecka, Monika; Heinzmann, Daniel; Rinner, Oliver; Dupuis, Nicholas; Wierling, Christoph; Li, Huaibiao; Kessler, Thomas; Muradyan, Artur; Kruetzfeldt, Louisa; Schuette, Moritz; Dreher, Felix; Ploubidou, Aspasia; Lange, Bodo Share Save
Analysis of 1508 Plasma Samples by Capillary-Flow Data-Independent Acquisition Profiles Proteomics of Weight Loss and Maintenance Bruderer, Roland; Muntel, Jan; Muller, Sebastian; Bernhard, Oliver M.; Gandhi, Tejas; Cominetti, Ornella; Macron, Charlotte; Carayol, Jerome; Rinner, Oliver; Astrup, Arne; Saris, Wim H. M.; Hager, Jorg; Valsesia, Armand; Dayon, Loic; Reiter, Lukas Share Save
CanPathPro-development of a platform for predictive pathway modelling using genetically engineered mouse models Wierling, Christoph; Herault, Yann; Jonkers, Jos; Ploubidou, Aspasia; Frappart, Lucien; Hasenauer, Jan; Banga, Julio; Rinner, Oliver; Naumova, Valeriya; Koubi, David; Lange, Bodo Share Save
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Extending the Limits of Quantitative Proteome Profiling with Data-Independent Acquisition and Application to Acetaminophen-Treated Three-Dimensional Liver Microtissues Bruderer, Roland; Bernhardt, Oliver M.; Gandhi, Tejas; Miladinovic, Sasa M.; Cheng, Lin-Yang; Messner, Simon; Ehrenberger, Tobias; Zanotelli, Vito; Butscheid, Yulia; Escher, Claudia; Vitek, Olga; Rinner, Oliver; Reiter, Lukas Share Save
DIGESTIF: A Universal Quality Standard for the Control of Bottom-Up Proteomics Experiments Lebert, Dorothee; Louwagie, Mathilde; Goetze, Sandra; Picard, Guillaume; Ossola, Reto; Duquesne, Caroline; Basler, Konrad; Ferro, Myriam; Rinner, Oliver; Aebersold, Ruedi; Garin, Jerome; Mouz, Nicolas; Brunner, Erich; Brun, Virginie Share Save
N-Glycoprotein SRMAtlas A RESOURCE OF MASS SPECTROMETRIC ASSAYS FOR N-GLYCOSITES ENABLING CONSISTENT AND MULTIPLEXED PROTEIN QUANTIFICATION FOR CLINICAL APPLICATIONS Huettenhain, Ruth; Surinova, Silvia; Ossola, Reto; Sun, Zhi; Campbell, David; Cerciello, Ferdinando; Schiess, Ralph; Bausch-Fluck, Damaris; Rosenberger, George; Chen, Jingchung; Rinner, Oliver; Kusebauch, Ulrike; Hajduch, Marian; Moritz, Robert L.; Wollscheid, Bernd; Aebersold, Ruedi Share Save
Cell type-specific nuclear pores: a case in point for context-dependent stoichiometry of molecular machines Ori, Alessandro; Banterle, Niccolo; Iskar, Murat; Andres-Pons, Amparo; Escher, Claudia; Bui, Huy Khanh; Sparks, Lenore; Solis-Mezarino, Victor; Rinner, Oliver; Bork, Peer; Lemke, Edward A.; Beck, Martin Share Save
Reproducible Quantification of Cancer-Associated Proteins in Body Fluids Using Targeted Proteomics Huttenhain, Ruth; Soste, Martin; Selevsek, Nathalie; Roest, Hannes; Sethi, Atul; Carapito, Christine; Farrah, Terry; Deutsch, Eric W.; Kusebauch, Ulrike; Moritz, Robert L.; Nimeus-Malmstroem, Emma; Rinner, Oliver; Aebersold, Ruedi Share Save
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Modularity and hormone sensitivity of the Drosophila melanogaster insulin receptor/target of rapamycin interaction proteome Glatter, Timo; Schittenhelm, Ralf B.; Rinner, Oliver; Roguska, Katarzyna; Wepf, Alexander; Juenger, Martin A.; Koehler, Katja; Jevtov, Irena; Choi, Hyungwon; Schmidt, Alexander; Nesvizhskii, Alexey I.; Stocker, Hugo; Hafen, Ernst; Aebersold, Ruedi; Gstaiger, Matthias Share Save
The quantitative proteome of a human cell line Beck, Martin; Schmidt, Alexander; Malmstroem, Johan; Claassen, Manfred; Ori, Alessandro; Szymborska, Anna; Herzog, Franz; Rinner, Oliver; Ellenberg, Jan; Aebersold, Ruedi Share Save
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