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J

Jonathan L. Jacobs

syracuse university

27H-index
67Paper Count
2.7KCitation Count
Published Papers 29
Publication Date
Genome-based reclassification of the genus Thermoanaerobacter: taxonomic emendations and new combinations
err2026-02-01
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PREAI
errBouras, Noureddine; Dif, Guendouz; Belghit, Said; Nguyen, Scott, V; Jacobs, Jonathan L.; Toumatia, Omrane; Ebada, Sherif S.; Nouioui, Imen
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Complete diploid genome of the type strain Yarrowia lipolytica YB-423 (ATCC 18942™)
err2026-01-01
err0
PREAI
errCrill, James E.; Nguyen, Scott, V; Tabron, Corina; Puthuveetil, Nikhita; Muhle, Anthony; Avery, Zethus W.; Petrone, Joseph; Bentley, Kaitlyn; Kirkland, Jade; Wax, Noah; Marlow, Robert; Duncan, James; King, Steve; Fernandes, Ana; Bagnoli, John; Benton, Briana; Ali, Shahin S.; Welch, Roy D.; Jacobs, Jonathan L.
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Genomic discovery of EF-24 targets unveils antitumorigenic mechanisms in leukemia cells
err2025-09-23
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PREAI
errSingh, Ajeet P.; Wax, Noah; Duncan, James; Fernandes, Ana S.; Jacobs, Jonathan L.
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RETRACTION: PERK Is Critical for Alphavirus Nonstructural Protein Translation
err2025-02-26
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errOAAI
errDahal, Bibha; Lehman, Caitlin W.; Akhrymuk, Ivan; Bracci, Nicole R.; Panny, Lauren; Barrera, Michael D.; Bhalla, Nishank; Jacobs, Jonathan L.; Dinman, Jonathan D.; Kehn-Hall, Kylene
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What makes Candida auris pan-drug resistant? Integrative insights from genomic, transcriptomic, and phenomic analysis of clinical strains resistant to all four major classes of antifungal drugs
err2024-10-08
err1
PREAI
errRhodes, Johanna; Jacobs, Jonathan; Dennis, Emily K.; Manjari, Swati R.; Banavali, Nilesh K.; Marlow, Robert; Rokebul, Mohammed Anower; Chaturvedi, Sudha; Chaturvedi, Vishnu
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FAIR Header Reference genome: a TRUSTworthy standard
err2024-03-28
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errOAAI
errWright, Adam; Wilkinson, Mark D.; Mungall, Christopher; Cain, Scott; Richards, Stephen; Sternberg, Paul; Provin, Ellen; Jacobs, Jonathan L.; Geib, Scott; Raciti, Daniela; Yook, Karen; Stein, Lincoln; Molik, David C.
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Standardized In Vitro Models of Human Adipose Tissue Reveal Metabolic Flexibility in Brown Adipocyte Thermogenesis
err2023-11-07
err4
errOAAI
errCero, Cheryl; Shu, Weiguo; Reese, Amy L.; Douglas, Diana; Maddox, Michael; Singh, Ajeet P.; Ali, Sahara L.; Zhu, Alexander R.; Katz, Jacqueline M.; Pierce, Anne E.; Long, Kelly T.; Nilubol, Naris; Cypess, Raymond H.; Jacobs, Jonathan L.; Tian, Fang; Cypess, Aaron M.
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Candida auris Pan-Drug-Resistant to Four Classes of Antifungal Agents
err2022-07-19
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errOAAI
errJacobs, Samantha E.; Jacobs, Jonathan L.; Dennis, Emily K.; Taimur, Sarah; Rana, Meenakshi; Patel, Dhruv; Gitman, Melissa; Patel, Gopi; Schaefer, Sarah; Iyer, Kishore; Moon, Jang; Adams, Victoria; Lerner, Polina; Walsh, Thomas J.; Zhu, YanChun; Anower, Mohammed Rokebul; Vaidya, Mayuri M.; Chaturvedi, Sudha; Chaturvedi, Vishnu
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Comparative Analysis and Data Provenance for 1,113 Bacterial Genome Assemblies
errMSPHERE
IF3.1
err2022-06-29
err6
errOAAI
errYarmosh, David A.; Lopera, Juan G.; Puthuveetil, Nikhita P.; Combs, Patrick Ford; Reese, Amy L.; Tabron, Corina; Pierola, Amanda E.; Duncan, James; Greenfield, Samuel R.; Marlow, Robert; King, Stephen; Riojas, Marco A.; Bagnoli, John; Benton, Briana; Jacobs, Jonathan L.
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EGR1 Upregulation during Encephalitic Viral Infections Contributes to Inflammation and Cell Death
err2022-06-02
err19
errOAAI
errLehman, Caitlin W.; Smith, Amy; Kelly, Jamie; Jacobs, Jonathan L.; Dinman, Jonathan D.; Kehn-Hall, Kylene
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RETRACTED: PERK Is Critical for Alphavirus Nonstructural Protein Translation (Retracted article. See vol. 17, 2025)
err2021-05-12
err8
errOAAI
errDahal, Bibha; Lehman, Caitlin W.; Akhrymuk, Ivan; Bracci, Nicole R.; Panny, Lauren; Barrera, Michael D.; Bhalla, Nishank; Jacobs, Jonathan L.; Dinman, Jonathan D.; Kehn-Hall, Kylene
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Unbiased Strain-Typing of Arbovirus Directly from Mosquitoes Using Nanopore Sequencing: A Field-forward Biosurveillance Protocol
err2018-04-03
err43
errOAAI
errRussell, Joseph A.; Campos, Brittany; Stone, Jennifer; Blosser, Erik M.; Burkett-Cadena, Nathan; Jacobs, Jonathan L.
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Ablation of Programmed-1 Ribosomal Frameshifting in Venezuelan Equine Encephalitis Virus Results in Attenuated Neuropathogenicity
err2017-02-01
err46
errOAAI
errKendra, Joseph A.; de la Fuente, Cynthia; Brahms, Ashwini; Woodson, Caitlin; Bell, Todd M.; Chen, Bin; Khan, Yousuf A.; Jacobs, Jonathan L.; Kehn-Hall, Kylene; Dinman, Jonathan D.
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Commensal Microflora Modulates TL1A Mediated Spontaneous Ileitis and TL1A Mediated Immune Changes
err2016-04-01
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PREAI
errKumagai, Kotaro; Kanazawa, Yoshitake; Jacobs, Jonathan; Jacob, Noam; Hamill, Ariel M.; Flores, Erica; Kim, YoungHee; Sartor, R. Balfour; Targan, Stephan; Shih, David Q.
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Venezuelan Equine Encephalitis Virus Induces Apoptosis through the Unfolded Protein Response Activation of EGR1
err2016-04-01
err59
errOAAI
errBaer, Alan; Lundberg, Lindsay; Swales, Danielle; Waybright, Nicole; Pinkham, Chelsea; Dinman, Jonathan D.; Jacobs, Jonathan L.; Kehn-Hall, Kylene
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Differing Microbial Populations Induce TL1A-Mediated Intestinal Fibrosis Independently of TL1A-Mediated Inflammation
err2016-04-01
err0
PREAI
errJacob, Noam; Kumagai, Kotaro; Kanazawa, Yoshitake; Hamill, Ariel M.; Flores, Erica; Kim, YoungHee; Sartor, R. Balfour; Targan, Stephan; Jacobs, Jonathan; Shih, David Q.
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Functionally diverse dendritic mRNAs rapidly associate with ribosomes following a novel experience
err2014-07-29
err65
errOAAI
errAinsley, Joshua A.; Drane, Laurel; Jacobs, Jonathan; Kittelberger, Kara A.; Reijmers, Leon G.
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VZV meningitis following varicella vaccine
err2010-08-01
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errOAAI
errFusco, Dahlene; Krawitz, Peter; LaRussa, Philip; Steinberg, Sharon; Gershon, Anne; Jacobs, Jonathan
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PRFdb: A database of computationally predicted eukaryotic programmed-1 ribosomal frameshift signals
err2008-07-17
err68
errOAAI
errBelew, Ashton T.; Hepler, Nicholas L.; Jacobs, Jonathan L.; Dinman, Jonathan D.
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