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Björn Usadel

helmholtz association

76H-index
335Paper Count
9.2WCitation Count
Published Papers 162
Publication Date
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Wild tomato genome assemblies reveal structural variants and repeat content act as recombination barriers
errNature Communications
IF15.7
err2026-06-28
err0
errOAAI
errWillem M. J. van Rengs; Roven Rommel Fuentes; Zahra Zangishei; Elias Primetis; Yazhong Wang; Joiselle B. Fernandes; Tamara Susanto; Qichao Lian; Sieglinde Effgen; Bruno Huettel; Saleh Alseekh; Björn Usadel; Charles J. Underwood
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Trimmomatic: A decade of feature-rich, high-performance NGS read preprocessing
errBioinformatics
IF5.4
err2026-05-22
err0
errOAAI
errSebastian Beier; Anthony M Bolger; Marie E Bolger; Rainer Schwacke; Björn Usadel; null
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Editorial: Genomic and metabolomic diversity in fruit plants: impacts of breeding techniques
errFrontiers in Plant Science
IF4.8
err2026-04-14
err0
errOAAI
errBM Bruno Mezzetti; BU Björn Usadel; SO Sonia Osorio
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Assessment of phenotypic trait plasticity in the oilseed Camelina sativa using integrated early stage abiotic stress and field studies
errPlant Physiology
IF6.9
err2026-03-01
err2
PREAI
errSilvestre, Susana; Prigent, Sylvain; Petriacq, Pierre; Hassall, Kirsty L.; Le Boulch, Malo; Da Costa, Anais; Tellier, Frederique; Alberghini, Barbara; Aldorino, Emilio; Hallab, Asis; Grosskinsky, Dominik K.; Cassan, Cedric; Monti, Andrea; Prieto, Javier; Leon, Paloma; Yambanis, Yuri Herreras; Gibon, Yves; Usadel, Bjorn; Faure, Jean-Denis; Zanetti, Federica; Jonak, Claudia; Haslam, Richard P.
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Cultivar-by-environment interactions shape strawberry fruit quality: A multi-omics approach across European climates
errFood Chemistry
IF9.8
err2026-01-29
err0
errOAAI
errPatricia Pacheco-Ruiz; Elisa Senger; Delphine M. Pott; Freya M.R. Ziegler; Lidia Jiménez; Anita Sønsteby; Erika Krüger; Philippe Chartier; Agnieszka Masny; Daniela Mott; Aurélie Petit; Gianluca Savini; Björn Usadel; Sonia Osorio; José G. Vallarino
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errSave
Malate matters: disrupting bacterial-type phosphoenolpyruvate carboxylase (BTPC) rewires tomato fruit development
errPlant Physiology
IF6.9
err2026-01-28
err0
errOAAI
errFelix J Martínez Rivas; Milena A Smith; Zahra Zangishei; Saleh Alseekh; Björn Usadel; William C Plaxton; Alisdair R Fernie; null
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errSave
Analysis Camellia sinensis var. sinensis cv. Fuding Dabaicha genome unveils structural variation-driven metabolic innovation
errNature Communications
IF15.7
err2026-01-14
err0
errOAAI
errWeiyi Zhang; Xiaohui Jiang; Shijie Luo; Arslan Tariq; Jan Buchmann; Dawei Gao; Xiaoliang Zhang; Alisdair R. Fernie; Björn Usadel; Weiwei Wen
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errSave
Imputation integrates single-cell and spatial gene expression data to resolve transcriptional networks in barley shoot meristem development
errNature Plants
IF13.6
err2026-01-07
err0
errOAAI
errEdgar Demesa-Arevalo; Hannah Dӧrpholz; Isaia Vardanega; Jan Eric Maika; Itzel Pineda-Valentino; Stella Eggels; Tobias Lautwein; Karl Kӧhrer; Thorsten Schnurbusch; Maria von Korff; Bjӧrn Usadel; Rüdiger Simon
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errSave
Evolving bioinformatics services - the journey of KPI metrics with Scorpion
errJournal of Integrative Bioinformatics
IF1.8
err2026-01-01
err1
PREAI
errFeser, Manuel; Arend, Daniel; Beier, Sebastian; Bolger, Marie; Lubke, Nils-Christian; Meister, Maria; Steilen, Lena; Usadel, Bjorn; Scholz, Uwe
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errSave
Helixer: ab initio prediction of primary eukaryotic gene models combining deep learning and a hidden Markov model
errNature Methods
IF32.1
err2025-11-24
err0
errOAAI
errFelix Holst; Anthony M. Bolger; Felicitas Kindel; Christopher Günther; Janina Maß; Sebastian Triesch; Niklas Kiel; Nima Saadat; Oliver Ebenhöh; Björn Usadel; Rainer Schwacke; Andreas P. M. Weber; Marie E. Bolger; Alisandra K. Denton
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errSave
Inheritance and enzymatic basis of anthocyanin malonylation in Fragaria × ananassa
errThe Plant Journal
IF0
err2025-10-24
err0
errOAAI
errXiran Wang; Johanna Trinkl; Martha Wulanjati; Annika Haugeneder; Klaus Olbricht; Sonia Osorio; Iraida Amaya; José F. Sánchez-Sevilla; Béatrice Denoyes; Aurélie Petit; Philippe Chartier; Luca Mazzoni; Bruno Mezzetti; Agnieszka Masny; Björn Usadel; Freya Ziegler; Zhen Yu; Xiaotong Zhu; Wenhao Shi; Chan Li; Chiye Yuan; Huiyun Hu; Timothy D. Hoffmann; Thomas Hoffmann; Wilfried G. Schwab
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errSave
Chromosome-level genome assemblies of Thai cassava ecotypes (Manihot esculenta & Manihot glaziovii)
errScientific Data
IF6.9
err2025-09-30
err0
errOAAI
errSebastian Beier; Marie Elizabeth Bolger; Yindee Chanvivattana; Anthony Michael Bolger; Maximilian Heinrich-Wilhelm Schmidt; Oranuch Leelapon; Rungroj Rakmit; Kulnida Changmai; Ratiporn Ruayreun; Sukanya Srithundon; Duangjit Totaiya; Boriphat Sitchanukrit; Björn Usadel; Prapit Wongtiem; Suwaluk Amawan; Tobias Wojciechowski
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errSave
Tomato and its relatives are breaking the genomics barriers
errJOURNAL OF EXPERIMENTAL BOTANY
IF5.7
err2025-08-01
err1
errOAAI
errRose, Laura Ellen; Zangishei, Zahra; Fernie, Alisdair R.; Usadel, Bjorn
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What can we learn from the ecophysiology of plants inhabiting extreme environments? From 'sherplants' to 'shercrops'
errJOURNAL OF EXPERIMENTAL BOTANY
IF5.7
err2025-08-01
err2
PREAI
errFlexas, Jaume; Fernie, Alisdair R.; Usadel, Bjoern; Alonso-Forn, David; Ardiles, Victor; Ball, Marilyn C.; Ballesteros, Daniel; Bravo, Leon; Brodribb, Tim J.; Carriqui, Marc; Castanyer-Mallol, Francesc; Cavieres, Lohengrin A.; Chondol, Thinles; Clemente-Moreno, Maria Jose; Coopman, Rafael E.; Corcuera, Luis; De Vries, Jan; Diaz-Espejo, Antonio; Dolezal, Jiri; Ergo, Veronica; Fernandez, Helena; Fernandez-Marin, Beatriz; Galmes, Jeroni; Garcia-Plazaola, Jose, I; Quintanilla, Luis G.; Gulias, Javier; Hernandez, Antonio; Luo, Kai; Martinez-Abaigar, Javier; Nadal, Miquel; Niinemets, Uelo; Nunez-Olivera, Encarnacion; Ostria-Gallardo, Enrique; Perera-Castro, Alicia, V; Perez-Lopez, Usue; Ribas-Carbo, Miquel; Roig-Oliver, Margalida; Rojas, Roke; Saez, Patricia L.; Tosens, Tiina; Viveros, Rodrigo; Xiong, Dongliang; Yan, Jianbing; Zhang, Yali; Gago, Jorge
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Taken to extremes: Loss of plastid rpl32 in Streptophyta and Cuscuta's unconventional solution for its replacement
errMOLECULAR PHYLOGENETICS AND EVOLUTION
IF3.6
err2025-03-01
err0
errOAAI
errFischer, Karsten; Jordbraek, Sondre Valentin; Olsen, Stian; Bockwoldt, Mathias; Schwacke, Rainer; Usadel, Bjorn; Krause, Kirsten
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Plant sperm cell sequencing for genome phasing and determination of meiotic crossover points
errNATURE PROTOCOLS
IF16
err2024-10-02
err0
PREAI
errZhang, Weiyi; Tariq, Arslan; Jia, Xinxin; Yan, Jianbing; Fernie, Alisdair R.; Usadel, Bjoern; Wen, Weiwei
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errSave
Potato Berries as a Valuable Source of Compounds Potentially Applicable in Crop Protection and Pharmaceutical Sectors: A Review
errJOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY
IF6.2
err2024-07-06
err1
errOAAI
errda Silva, Marilia Bueno; Wiese-Klinkenberg, Anika; Usadel, Bjoern; Genzel, Franziska
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In-depth exploration of the genomic diversity in tea varieties based on a newly constructed pangenome of Camellia sinensis
errPLANT JOURNAL
IF5.7
err2024-06-14
err1
errOAAI
errTariq, Arslan; Meng, Minghui; Jiang, Xiaohui; Bolger, Anthony; Beier, Sebastian; Buchmann, Jan P.; Fernie, Alisdair R.; Wen, Weiwei; Usadel, Bjoern
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Metabolomic and transcriptomic analyses of yellow-flowered crocuses to infer alternative sources of saffron metabolites
errBMC PLANT BIOLOGY
IF4.8
err2024-05-07
err1
errOAAI
errNemati, Zahra; Kazemi-Shahandashti, Seyyedeh-Sanam; Garibay-Hernandez, Adriana; Mock, Hans-Peter; Schmidt, Maximilian H. -W.; Usadel, Bjoern; Blattner, Frank R.
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Haplotype-resolved assembly of a tetraploid potato genome using long reads and low-depth offspring data
errGENOME BIOLOGY
IF9.4
err2024-01-19
err3
errOAAI
errMari, Rebecca Serra; Schrinner, Sven; Finkers, Richard; Ziegler, Freya Maria Rosemarie; Arens, Paul; Schmidt, Maximilian H. -W.; Usadel, Bjoern; Klau, Gunnar W.; Marschall, Tobias
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Research Directions

No research directions
Co-authors
Cooperation Journals
A
Alisdair R. Fernie
H-index: 170 · Papers: 1.7K
D
Detlef Weigel
H-index: 163 · Papers: 944
M
Mark Stitt
H-index: 150 · Papers: 577
Ü
Ülo Niinemets
H-index: 126 · Papers: 665
R
Roderic Guigó
H-index: 126 · Papers: 704
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