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J

Jiangning Song

monash university

65H-index
454Paper Count
1.4WCitation Count
Published Papers 203
Publication Date
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AI proteomics: from protein identification to virtual cells
errNature Methods
IF32.1
err2026-07-28
err0
PREAI
errYingying Sun; Jun A; Zhiwei Liu; Rui Sun; Liujia Qian; Samuel H. Payne; Wout Bittremieux; Markus Ralser; Chen Li; Yi Chen; Zhen Dong; Yasset Perez-Riverol; Asif Khan; Chris Sander; Ruedi Aebersold; Juan Antonio Vizcaíno; Jonathan R. Krieger; Jianhua Yao; Wen Han; Linfeng Zhang; Yunping Zhu; Yue Xuan; Benjamin Boyang Sun; Liang Qiao; Henning Hermjakob; Haixu Tang; Huanhuan Gao; Yamin Deng; Qing Zhong; Cheng Chang; Nuno Bandeira; Ming Li; Weinan E; Siqi Sun; Yuedong Yang; Gilbert S. Omenn; Yue Zhang; Ping Xu; Yan Fu; Xiaowen Liu; Christopher M. Overall; Yu Wang; Eric W. Deutsch; Luonan Chen; Jürgen Cox; Vadim Demichev; Fuchu He; Jiaxing Huang; Huilin Jin; Chao Liu; Nan Li; Zhongzhi Luan; Jiangning Song; Kaicheng Yu; Wanggen Wan; Tai Wang; Kang Zhang; Le Zhang; Peter A. Bell; Matthias Mann; Bing Zhang; Tiannan Guo
errShare
errSave
Causal effects of wildfire PM2.5 on hospital costs and length of stay in Brazil
errNature Communications
IF15.7
err2026-07-07
err0
errOAAI
errKe Ju; Rongbin Xu; Wenzhong Huang; Yiwen Zhang; Tingting Ye; Wenhua Yu; Zhengyu Yang; Gongbo Chen; Yanming Liu; Pei Yu; Shuang Zhou; Yao Wu; Bo Wen; Zhihu Xu; Paulo H. N. Saldiva; Micheline S. Z. S. Coelho; Jiangning Song; Shanshan Li; Yuming Guo
errShare
errSave
Generalizable mutation-effect prediction across adaptive immune recognition via unified multimodal framework
errNature Machine Intelligence
IF23.9
err2026-05-27
err0
PREAI
errRong Han; Yumeng Zhang; Xiaohong Liu; Lei Fu; Tong Pan; Jing Xu; Xiaoyu Wang; Peidong Zhang; Xuanzhong Chen; Jiesi Lei; Wuyang Lan; Changwei Ji; Shuguang Cui; Song Wu; Jiangning Song; Ting Chen; Guangyu Wang
errShare
errSave
AMR-GNN: a multi-representation graph neural network framework to enable genomic antimicrobial resistance prediction
errNature Communications
IF15.7
err2026-03-06
err0
errOAAI
errHoai-An Nguyen; Anton Y. Peleg; Jessica A. Wisniewski; Xiaoyu Wang; Zhikang Wang; Luke V. Blakeway; Gnei Z. Badoordeen; Ravali Theegala; Nhu Quynh Doan; Matthew H. Parker; Anna G. Green; Jiangning Song; David L. Dowe; Nenad Macesic
errShare
errSave
Genome-Wide Inference of Essential Genes in Dirofilaria immitis Using Machine Learning
errInternational Journal of Molecular Sciences
IF4.9
err2026-03-03
err0
errOAAI
errTulio L. Campos; Pasi K. Korhonen; Neil D. Young; Sunita B. Sumanam; Whitney Bullard; John M. Harrington; Jiangning Song; Bill C. H. Chang; Richard Marhoefer; Paul M. Selzer; Robin Gasser
errShare
errSave
A unified framework for multiomics deconvolution
errNature Methods
IF32.1
err2026-03-02
err0
PREAI
errXiaoyu Wang; Fuyi Li; Robin B. Gasser; Jiangning Song
errShare
errSave
Predicting disease-specific histone modifications and functional effects of non-coding variants by leveraging DNA language models
errGenome Biology
IF9.4
err2026-02-14
err0
PREAI
errWang, Xiaoyu; Pan, Tong; Chen, Sihan; Webb, Geoffrey I.; Jiang, Yunzhe; Rozowsky, Joel; Gerstein, Mark; Song, Jiangning
errShare
errSave
Identification and validation of an 11-kinase signature that predicts chemo- and radiosensitivity in gastric cancer
erreBioMedicine
IF10.8
err2026-02-11
err0
errOAAI
errChangyuan Hu; Sung-Young Shin; Yanan Wang; Chenbin Chen; Pei Liu; Rita A. Busuttil; Yunjian Wu; Catriona A. McLean; Hongying Shi; Terry Kwok; Lan K. Nguyen; Jiangning Song; Alex Boussioutas; Xian Shen; Roger J. Daly
errShare
errSave
Genome-wide reconstruction of the intrinsic apoptosis pathway in Haemonchus contortus
errBMC Genomics
IF3.7
err2026-02-09
err0
errOAAI
errYanxiang Shen; Neil D. Young; Jiangning Song; Brad E. Sleebs; Bill C. H. Chang; Erinna F. Lee; Walter D. Fairlie; Robin B. Gasser
errShare
errSave
Wildfire-sourced fine particulate matter and mental disorders in children and adolescents
errNature Mental Health
IF8.7
err2026-02-01
err0
PREAI
errZhang, Yiwen; Zhou, Shuang; Xu, Rongbin; Yang, Zhengyu; Huang, Wenzhong; Saldiva, Paulo H. N.; Yu, Wenhua; Chen, Gongbo; Coelho, Micheline S. Z. S.; Ye, Tingting; Liu, Yanming; Yu, Pei; Lavigne, Eric; Song, Jiangning; Guo, Yuming; Li, Shanshan
errShare
errSave
Bridging the dimensional gap from planar spatial transcriptomics to 3D cell atlases
errNature Methods
IF32.1
err2025-12-31
err0
PREAI
errSenlin Lin; Zhikang Wang; Yan Cui; Qi Zou; Chuangyi Han; Rui Yan; Zhidong Yang; Wei Zhang; Rui Gao; Jiangning Song; Michael Q. Zhang; Hanchuan Peng; Jintai Yu; Jianfeng Feng; Yi Zhao; Zhiyuan Yuan
errShare
errSave
High-parameter spatial multi-omics through histology-anchored integration
errNature Methods
IF32.1
err2025-12-17
err0
PREAI
errYonghao Liu; Chuyao Wang; Zhikang Wang; Liang Chen; Zhi Li; Jiangning Song; Qi Zou; Rui Gao; Bin-Zhi Qian; Xiaoyue Feng; Renchu Guan; Zhiyuan Yuan
errShare
errSave
Identification of a novel antimicrobial peptide Gp-AMP1 with broad-spectrum and exceptional stability from deep-sea mussel Gigantidas platifrons
errFood Chemistry
IF9.8
err2025-12-16
err0
PREAI
errGuanghui Han; Hao Chen; Lianhong Zhuo; Haoyu Yu; Ning Wu; Minxiao Wang; Jiangning Song; Chaolun Li
errShare
errSave
A scalable equivariant graph network framework for precise protein function prediction
errGenome Biology
IF9.4
err2025-11-29
err0
errOAAI
errZixu Ran; Xudong Guo; Tong Pan; Yue Bi; Yi Hao; Heyun Sun; Jiangning Song; Fuyi Li
errShare
errSave
Integrating Graph Convolutional Networks for Missing Gene Expression Imputation
errIEEE Transactions on Computational Biology and Bioinformatics
IF0
err2025-11-01
err0
PREAI
errZhang, Ying; Yu, Hong-Jin; Yan, Zi-Hao; Pan, Tong; Zhang, Yiwen; Liu, Yan; Li, Shanshan; Guo, Yuming; Song, Jiangning; Yu, Dong-Jun
errShare
errSave
Deep learning speeds the search for new antibiotic scaffolds
errNature Biotechnology
IF41.7
err2025-10-24
err0
PREAI
errYumeng Zhang; Jiangning Song; Cesar de la Fuente-Nunez
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errSave
Learning conformational flexibility of immune receptors
errNature Machine Intelligence
IF23.9
err2025-10-16
err0
PREAI
errLong-Chen Shen; Dong-Jun Yu; Jiangning Song
errShare
errSave
Complex pathways to ceftolozane-tazobactam resistance in clinical Pseudomonas aeruginosa isolates: a genomic epidemiology study
errClinical Microbiology and Infection
IF8.5
err2025-09-26
err0
PREAI
errHoai-An Nguyen; Anton Y. Peleg; Jiangning Song; Jessica A. Wisniewski; Luke V. Blakeway; Gnei Z. Badoordeen; Ravali Theegala; Nhu Quynh Doan; Matthew H. Parker; David L. Dowe; Nenad Macesic
errShare
errSave
MutPNI: A Unified Model Architecture for Accurately Predicting the Effects of Mutations on Protein-Nucleic Acid Interactions
errJournal of Chemical Information and Modeling
IF5.3
err2025-07-28
err0
PREAI
errZihao Yan; Fang Ge; Ying Zhang; He Yan; Yan Liu; Yi-Heng Zhu; Jiangning Song; Dong-Jun Yu
errShare
errSave
Self-iterative multiple-instance learning enables the prediction of CD4+ T cell immunogenic epitopes
errNature Machine Intelligence
IF23.9
err2025-07-10
err0
errOAAI
errLong-Chen Shen; Yumeng Zhang; Zhikang Wang; Dene R. Littler; Yan Liu; Jinhui Tang; Jamie Rossjohn; Dong-Jun Yu; Jiangning Song
errShare
errSave

Research Directions

No research directions
Co-authors
Cooperation Journals
R
Ruedi Aebersold
H-index: 198 · Papers: 1.2K
V
Vladimir N. Uversky
H-index: 155 · Papers: 2.5K
L
Lídia Morawska
H-index: 125 · Papers: 1.1K
K
Kuo‐Chen Chou
H-index: 124 · Papers: 483
Y
Yuming Guo
H-index: 120 · Papers: 1.3K
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