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Paul D. Cotter

university college cork

113H-index
729Paper Count
5.5WCitation Count
Published Papers 368
Publication Date
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Genetic and enzymatic basis of xylooligosaccharide metabolism by Bifidobacterium longum
errGut Microbes
IF11
err2026-07-10
err0
errOAAI
errLisa Friess; Fionnuala M. McAuliffe; Paul D. Cotter; Jose Munoz-Munoz; Anthony L. Shiver; Kerwyn Casey Huang; Anne de Jong; Douwe van Sinderen
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From “synthetic” to defined microbial communities for clearer terminology
errNature Communications
IF15.7
err2026-06-08
err0
errOAAI
errHanna Koch; Thomas Clavel; Cintia Mayr; Benjamin L. Coltman; Michael Schloter; Julia A. Vorholt; Yolanda Sanz; Tomislav Cernava; Gwyn A. Beattie; Lene Lange; Stéphane Chaillou; Ákos T. Kovács; Hauke Smidt; Corné M. J. Pieterse; Tanja Kostic; Omri M. Finkel; Christopher E. Lawson; Luca Cocolin; Jesús Mercado-Blanco; Robert D. Finn; Kalliope K. Papadopoulou; Matthew Ryan; Marco Candela; Paul D. Cotter; Gabriele Berg; Orla O’Sullivan; Manuel Delgado-Baquerizo; Pankaj Trivedi; Trevor C. Charles; Brajesh K. Singh; Günter Brader; Malek Marian; Angela Sessitsch
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errSave
Mining of food metagenomes reveals an unexplored diversity of dsDNA bacteriophages
errnpj Biofilms and Microbiomes
IF9.2
err2026-03-27
err0
errOAAI
errLiam H. Walsh; Viyal Soni; Joseph Ancla; Vincent Somerville; Nicola Segata; Susan Joyce; Douwe van Sinderen; Jennifer Mahony; Andrey N. Shkoporov; John G. Kenny; Paul D. Cotter; Orla O’Sullivan
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errSave
Metabolic pathway analysis reveals hierarchical pentose sugar utilization and metabolic flexibility of Bifidobacterium longum
errGut Microbes
IF11
err2026-03-23
err0
errOAAI
errLisa Friess; Fionnuala M. McAuliffe; Paul D. Cotter; Anthony L. Shiver; Kerwyn Casey Huang; Anne de Jong; Douwe van Sinderen
errShare
errSave
Relationship between the dietary inflammatory index and immune function during pregnancy – A secondary analysis of the MicrobeMom2 Study
errEuropean Journal of Clinical Nutrition
IF3.3
err2025-12-20
err0
errOAAI
errS. Hempelmann Perez; G. Mealy; K. Brennan; S. L. Killeen; R. Saldova; D. Groeger; D. Van Sinderen; P. D. Cotter; S. L. Doyle; F. M. McAuliffe
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errSave
Water kefir multi-omics reveals functional redundancies despite taxonomic differences and the underappreciated contribution of yeast
errnpj Science of Food
IF7.8
err2025-12-09
err0
errOAAI
errSamuel Breselge; Luiza de Paula Dias Moreira; Iwona Skibinska; Xiaofei Yin; Lorraine Brennan; Kieran Kilcawley; Davide Porcellato; Paul D. Cotter
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errSave
Genomic characterisation of recurrent Mycobacterium avium isolates from chronically infected patients reveals patterns of within-host evolution
errGenome Medicine
IF11.2
err2025-10-14
err0
errOAAI
errAaron M. Walsh; Emma Roycroft; Kate Hinchion; Sharee A. Basdeo; Frederick J. Sheedy; Fiona Crispie; Paul D. Cotter; Anne Marie McLaughlin; Joseph Keane; Margaret M. Fitzgibbon; Laura E. Gleeson
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errSave
Impact of fermented foods consumption on gastrointestinal wellbeing in healthy adults: a systematic review and meta-analysis
errFrontiers in Nutrition
IF5.1
err2025-10-10
err0
errOAAI
errArghya Mukherjee; Dominic N. Farsi; Enriqueta Garcia-Gutierrez†; Ecem Akan†; Jose Angel Salas Millan†; Ljupco Angelovski†; Thomas Bintsis†; Amaury Gérard†; Ziba Güley†; Sümeyye Kabakcı†; Minna Kahala†; Ryma Merabti†‡; Foteini Pavli†; Elisa Salvetti†; Cem Karagözlü; Nurcan Bağlam; Bahtir Hyseni; Simona Bavaro; Konstantinos Papadimitriou; Eun-Hee Doo; Christophe Chassard; Smilja Praćer; Guy Vergères; Paul D. Cotter; Sandra Mojsova
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errSave
Edible Microbiome and Dietary Microbiota: Bridging Two Interrelated Concepts
errCurrent Opinion in Food Science
IF9.1
err2025-10-09
err0
errOAAI
errTanja Kostic; Gabriele Berg; Paul D. Cotter; Wisnu Adi Wicaksono
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errSave
A technical feasibility study evaluating sustainable enzyme-based cleaning-in-place (CIP) for removal of milk deposits formed on stainless steel surfaces during cheesemilk pasteurisation
errInternational Journal of Dairy Technology
IF2.8
err2025-10-01
err0
errOAAI
errPant, Karan J.; Cotter, Paul D.; Wilkinson, Martin G.; Sheehan, Jeremiah J.
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errSave
Health benefits of ethnic fermented foods
errFrontiers in Nutrition
IF5.1
err2025-09-28
err0
errOAAI
errDushica Santa; Melanie Huch; Dominic A. Stoll; Hülya Cunedioglu; Reimo Priidik; Barçın Karakaş-Budak; Antonia Matalas; Vincenzo Pennone; Aiswarya Girija; Elena Arranz; Michail Syrpas; Arghya Mukherjee; Paul D. Cotter; Sandra Mojsova; Christophe Chassard; Smilja Praćer; Guy Vergères; Mary-Liis Kütt
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errSave
Relationship between the dietary inflammatory index and immune function during pregnancy
errEUROPEAN JOURNAL OF OBSTETRICS & GYNECOLOGY AND REPRODUCTIVE BIOLOGY
IF1.9
err2025-09-25
err0
PREAI
errPerez, Sofia Hempelmann; Mealy, Grace; Brennan, Kiva; Killeen, Sarah Louise; Saldova, Radka; Groeger, David; Van Sinderen, Douwe; Cotter, Paul D.; Doyle, Sarah Louise; McAuliffe, Fionnuala
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errSave
Stress and depression risk in early pregnancy associates with suppressed TNF-a levels
errEUROPEAN JOURNAL OF OBSTETRICS & GYNECOLOGY AND REPRODUCTIVE BIOLOGY
IF1.9
err2025-09-25
err0
PREAI
errMealy, Grace; Pereza, Sofia Hempelmann; Brennan, Kiva; Callanan, Sophie; Saldova, Radka; Groeger, David; Van Sinderen, Douwe; Cotter, Paul; Doyle, Sarah; Mcauliffe, Fionnuala
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errSave
Effects of a combined energy restriction and vigorous-intensity exercise intervention on the human gut microbiome: A randomised controlled trial
errphysiology
IF0
err2025-08-19
err0
errOAAI
errRussell G. Davies; Laura A. Wood; Aaron Hengist; Ciara O'Donovan; Wiley Barton; Fiona Crispie; Jean-Philippe Walhin; Maria A. Valdivia-Garcia; Isabel Garcia-Perez; Gary Frost; Orla O'Sullivan; Paul D. Cotter; Javier T. Gonzalez; James A. Betts; Françoise Koumanov; Dylan Thompson
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errSave
Breastfeeding and the milk resistome shape the establishment and transmission of antibiotic resistance genes in the infant gut microbiome
errGut Microbes
IF11
err2025-08-04
err0
errOAAI
errZhe Pan; Calum J. Walsh; Conor Feehily; Sai Ravi Chandra Nori; Fionnuala M. McAuliffe; Paul D. Cotter; John MacSharry; Douwe van Sinderen
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errSave
The food-associated resistome is shaped by processing and production environments
errNature Microbiology
IF19.4
err2025-07-30
err0
errOAAI
errNarciso M. Quijada; José F. Cobo-Díaz; Vincenzo Valentino; Coral Barcenilla; Francesca De Filippis; Raul Cabrera-Rubio; Niccolò Carlino; Federica Pinto; Monika Dzieciol; Inés Calvete-Torre; Carlos Sabater; Francesco Rubino; Stephen Knobloch; Sigurlaug Skirnisdottir; Lorena Ruiz; Mercedes López; Miguel Prieto; Viggó Thór Marteinsson; Abelardo Margolles; Nicola Segata; Paul D. Cotter; Martin Wagner; Danilo Ercolini; Avelino Alvarez-Ordóñez
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errSave
Development of a bio-functional fermented soy beverage supplemented with microbial exopolysaccharides and its effect on the human gut microbiome in vitro
errFood Funct.
IF0
err2025-07-27
err0
errOAAI
errGiulia Bisson; Clara Comuzzi; Jamie A. FitzGerald; Arghya Mukherjee; Niccolò Renoldi; Nadia Innocente; Tom Beresford; Harsh Mathur; Paul D. Cotter; Marilena Marino
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errSave
Stress and depression risk in pregnancy associates with altered immune function
errworld journal of biological psychiatry
IF0
err2025-07-26
err0
errOAAI
errGrace Mealy; Sofia Hempelmann Perez; Kiva Brennan; Sophie Callanan; Radka Saldova; David Groeger; Douwe Van Sinderen; Paul D. Cotter; Sarah L. Doyle; Fionnuala M. McAuliffe
errShare
errSave
Maternal Immune Activation and Antibiotics affect Offspring Neurodevelopment, Behaviour, and Microbiome
errbrain behavior and immunity
IF0
err2025-07-21
err0
errOAAI
errClara Deady; Jamie FitzGerald; Nirit Kara; Martina Mazzocchi; Adam O'Mahony; Mara Ioana Ionescu; Ruth Shanahan; Saoirse Kelly; Fiona Crispie; Paul D. Cotter; Fergus P. McCarthy; Cathal McCarthy; Gerard W. O'Keeffe; Siobhain M. O'Mahony
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errSave
Effects of feeding a simulated waste milk on growth, health, fecal microbiota, and antibiotic resistance in dairy heifer calves
errJournal of Dairy Science
IF4.4
err2025-05-16
err0
errOAAI
errAnna Flynn; Wiley Barton; Catherine McAloon; Marie McFadden; Fiona Crispie; Sarah E. McPherson; Gaston Allendez; John-Paul Murphy; Conor G. McAloon; Paul D. Cotter; Emer Kennedy
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Research Directions

No research directions
Co-authors
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