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J

Jan Gorodkin

University of Copenhagen

51H-index
233Paper Count
1.2WCitation Count
Published Papers 85
Publication Date
Light and excessive CO2 uptake inhibit growth of Synechococcus sp. PCC 7002 under very high CO2 levels
err2026-04-13
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errOAAI
errElena Carrasquer-Alvarez; Adrian Sven Geissler; Joshua Papa Abraham; Jan Gorodkin; Brian Frederick Pfleger; Stefan Ernst Seemann; Niels-Ulrik Frigaard
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Associating cancer-related RNA structure disrupting SNPs in LincRNAs to function
err2025-12-12
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errXueer Han; Christian Anthon; Adrian Sven Geissler; Radhakrishnan Sabarinathan; Stefan Ernst Seemann; Jakob Hull Havgaard; Jan Gorodkin
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Extrachromosomal circular miRNA-gene amplifications contribute to the renal cancer phenotype
err2025-12-10
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errPeng Han; Wei Lv; Zhe Xu; Tianxi Yu; Shan Gao; Xi Xiang; Xiaoguang Pan; Yuchen Zeng; Jakob Hull Havgaard; Jan Gorodkin; Xue Liang; Shuang Wu; Huiying Tao; Xiaolong Sui; Wenting Wang; Wei Dong; Huanming Yang; Chunhua Lin; Birgitte Regenberg
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Deep learning models simultaneously trained on multiple datasets improve base-editing activity prediction
err2025-11-07
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errYing Sun; Kunli Qu; Giulia I. Corsi; Christian Anthon; Xiaoguang Pan; Xi Xiang; Lars Juhl Jensen; Lin Lin; Yonglun Luo; Jan Gorodkin
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Point-of-Care Solid-Phase PCR in a Vertical Microfluidic Chip Integrated with All-Dielectric Nanostructured Metasurface for Highly Sensitive, Multiplexed Pathogen Detection
err2025-10-01
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PREAI
errSeder, Islam; Beliaev, Leonid; Tellez, Rodrigo Coronel; Anthon, Christian; Grissa, Dhouha; Zheng, Tao; Gorodkin, Jan; Xiao, Sanshui; Sun, Yi
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Binding and Ligand Activation Driven Enrichment-Directed Evolution of SaCas9 gRNAs Improves Gene Editing Efficiency
err2025-09-01
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PREAI
errLlanga, Telmo; Bush, Korie; Sun, Ying; Yan, Amy; Zhou, Jonathan; Gorodkin, Jan; Sullenger, Bruce A.
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Off-target effects in CRISPR-Cas genome editing for human therapeutics: Progress and challenges
err2025-07-17
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PREAI
errNechama Kalter; Carla Fuster-García; Alfredo Silva; Víctor Ronco-Díaz; Stefano Roncelli; Giandomenico Turchiano; Jan Gorodkin; Toni Cathomen; Karim Benabdellah; Ciaran Lee; Ayal Hendel
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Computational discovery of conserved RNA structures and functional characterization of a structured lncRNA in Leishmania braziliensis
err2025-05-20
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errCaroline R. Espada; Christian Anthon; Rubens D.M. Magalhães; José Carlos Quilles Junior; Natalia M.M. Teles; Fabiano S. Pais; Lissur A. Orsine; Letícia de Almeida; Tânia P.A. Defina; Adam Dowle; Jan Gorodkin; Pegine B. Walrad; Angela K. Cruz
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RETRACTION: A non-enzymatic, isothermal strand displacement and amplification assay for rapid detection of SARS-CoV-2 RNA
err2025-05-17
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errMohammadniaei, Mohsen; Zhang, Ming; Ashley, Jon; Christensen, Ulf Bech; Friis-Hansen, Lennart Jan; Gregersen, Rasmus; Lisby, Jan Gorm; Benfield, Thomas Lars; Nielsen, Finn Erland; Rasmussen, Jens Henning; Pedersen, Ellen Botker; Olinger, Anne Christine Rye; Kolding, Laerke Torring; Naseri, Maryam; Zheng, Tao; Wang, Wentao; Gorodkin, Jan; Sun, Yi
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An Overview and Comparative Analysis of CRISPR-SpCas9 gRNA Activity Prediction Tools
err2025-03-01
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PREAI
errYuan, Hao; Song, Chunping; Xu, Huixin; Sun, Ying; Anthon, Christian; Bolund, Lars; Lin, Lin; Benabdellah, Karim; Lee, Ciaran; Hou, Yong; Gorodkin, Jan; Luo, Yonglun
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Photosynthesis in Synechocystis sp. PCC 6803 is not optimally regulated under very high CO2
err2025-01-30
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errCarrasquer-Alvarez, Elena; Hoffmann, Ute Angelika; Geissler, Adrian Sven; Knave, Axel; Gorodkin, Jan; Seemann, Stefan Ernst; Hudson, Elton P.; Frigaard, Niels-Ulrik
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Clusters of mammalian conserved RNA structures in UTRs associate with RBP binding sites
err2024-08-09
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errOAAI
errGadekar, Veerendra P.; Munk, Alexander Welford; Miladi, Milad; Junge, Alexander; Backofen, Rolf; Seemann, Stefan E.; Gorodkin, Jan
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Generating universal anti-CD19 CAR T cells with a defined memory phenotype by CRISPR/Cas9 editing and safety evaluation of the transcriptome
err2024-05-29
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errPavlovic, Kristina; Carmona-Luque, Mdolores; Corsi, Giulia I.; Maldonado-Perez, Noelia; Molina-Estevez, Francisco J.; Peralbo-Santaella, Esther; Cortijo-Gutierrez, Marina; Justicia-Lirio, Pedro; Tristan-Manzano, Maria; Ronco-Diaz, Victor; Ballesteros-Ribelles, Antonio; Millan-Lopez, Alejandro; Heredia-Velazquez, Paula; Fuster-Garcia, Carla; Cathomen, Toni; Seemann, Stefan E.; Gorodkin, Jan; Martin, Francisco; Herrera, Concha; Benabdellah, Karim
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Progress and harmonization of gene editing to treat human diseases: Proceeding of COST Action CA21113 GenE-HumDi
err2023-12-01
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errCavazza, Alessia; Hendel, Ayal; Bak, Rasmus O.; Rio, Paula; Guell, Marc; Lainscek, Dusko; Arechavala-Gomeza, Virginia; Peng, Ling; Hapil, Fatma Zehra; Harvey, Joshua; Ortega, Francisco G.; Gonzalez-Martinez, Coral; Lederer, Carsten W.; Mikkelsen, Kasper; Gasiunas, Giedrius; Kalter, Nechama; Goncalves, Manuel A. F. V.; Petersen, Julie; Garanto, Alejandro; Montoliu, Lluis; Maresca, Marcello; Seemann, Stefan E.; Gorodkin, Jan; Mazini, Loubna; Sanchez, Rosario; Rodriguez-Madoz, Juan R.; Maldonado-Perez, Noelia; Laura, Torella; Schmueck-Henneresse, Michael; Maccalli, Cristina; Gruenewald, Julian; Carmona, Gloria; Kachamakova-Trojanowska, Neli; Miccio, Annarita; Martin, Francisco; Turchiano, Giandomenico; Cathomen, Toni; Luo, Yonglun; Tsai, Shengdar Q.; Benabdellah, Karim
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Alteration of microglial metabolism and inflammatory profile contributes to neurotoxicity in a hiPSC-derived microglia model of frontotemporal dementia 3
err2023-10-01
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errOAAI
errHaukedal, Henriette; Lorenzen, Signe Syshoj; Westi, Emil Winther; Corsi, Giulia I.; Gadekar, Veerendra P.; McQuade, Amanda; Davtyan, Hayk; Doncheva, Nadezhda T.; Schmid, Benjamin; Chandrasekaran, Abinaya; Seemann, Stefan E.; Cirera, Susanna; Blurton-Jones, Mathew; Meyer, Morten; Gorodkin, Jan; Aldana, Blanca I.; Freude, Kristine
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Utilizing directed evolution to interrogate and optimize CRISPR/Cas guide RNA scaffolds
err2023-08-01
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errBush, Korie; Corsi, Giulia I.; Yan, Amy C.; Haynes, Keith; Layzer, Juliana M.; Zhou, Jonathan H.; Llanga, Telmo; Gorodkin, Jan; Sullenger, Bruce A.
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The transcriptomic landscape of neurons carrying PSEN1 mutations reveals changes in extracellular matrix components and non-coding gene expression
err2023-03-01
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errOAAI
errCorsi, Giulia I.; Gadekar, Veerendra P.; Haukedal, Henriette; Doncheva, Nadezhda T.; Anthon, Christian; Ambardar, Sheetal; Palakodeti, Dasaradhi; Hyttel, Poul; Freude, Kristine; Seemann, Stefan E.; Gorodkin, Jan
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Golgi fragmentation - One of the earliest organelle phenotypes in Alzheimer's disease neurons
err2023-02-16
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errHaukedal, Henriette; Corsi, Giulia I.; Gadekar, Veerendra P.; Doncheva, Nadezhda T.; Kedia, Shekhar; de Haan, Noortje; Chandrasekaran, Abinaya; Jensen, Pia; Schionning, Pernille; Vallin, Sarah; Marlet, Frederik Ravnkilde; Poon, Anna; Pires, Carlota; Agha, Fawzi Khoder; Wandall, Hans H.; Cirera, Susanna; Simonsen, Anja Hviid; Nielsen, Troels Tolstrup; Nielsen, Jorgen Erik; Hyttel, Poul; Muddashetty, Ravi; Aldana, Blanca I.; Gorodkin, Jan; Nair, Deepak; Meyer, Morten; Larsen, Martin Rossel; Freude, Kristine
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Cross-species high-resolution transcriptome profiling suggests biomarkers and therapeutic targets for ulcerative colitis
err2023-01-05
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errYarani, Reza; Palasca, Oana; Doncheva, Nadezhda T.; Anthon, Christian; Pilecki, Bartosz; Svane, Cecilie A. S.; Mirza, Aashiq H.; Litman, Thomas; Holmskov, Uffe; Bang-Berthelsen, Claus H.; Vilien, Mogens; Jensen, Lars J.; Gorodkin, Jan; Pociot, Flemming
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CRISPRi screen for enhancing heterologous α-amylase yield in Bacillus subtilis
err2022-12-23
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errGeissler, Adrian Sven; Fehler, Annaleigh Ohrt; Poulsen, Line Dahl; Gonzalez-Tortuero, Enrique; Kallehauge, Thomas Beuchert; Alkan, Ferhat; Anthon, Christian; Seemann, Stefan Ernst; Rasmussen, Michael Dolberg; Breuener, Anne; Hjort, Carsten; Vinther, Jeppe; Gorodkin, Jan
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