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Paul P. Gardner

University of Otago

43H-index
159Paper Count
1.0WCitation Count
Published Papers 50
Publication Date
Pervasive transcription in the human genome exceeds background noise
err2026-02-25
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errOAAI
errBrett N Adey; Danielle J Maddock; Sylvie Hermann-Le Denmat; Marcel E Dinger; Paul P Gardner; Anthony M Poole; Austen R D Ganley; null
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Towards a phylogenetically informed approach to solving protein-protein interactions
err2025-12-01
err0
PREAI
errLim, Chun Shen; Mace, Peter; Fineran, Peter C.; Gardner, Paul P.
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High-throughput transposon mutagenesis in the family Enterobacteriaceae reveals core essential genes and rapid turnover of essentiality
errMBIO
IF4.7
err2024-10-16
err3
errOAAI
errA. Ghomi, Fatemeh; Jung, Jakob J.; Langridge, Gemma C.; Cain, Amy K.; Boinett, Christine J.; Abd El Ghany, Moataz; Pickard, Derek J.; Kingsley, Robert A.; Thomson, Nicholas R.; Parkhill, Julian; Gardner, Paul P.; Barquist, Lars
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Serratia-based toxin cluster elements are associated with a type I fimbria
err2024-01-02
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errOAAI
errSitter, Lesley; Schoof, Marion; Glare, Travis R.; Cox, Murray P.; Fineran, Peter C.; Gardner, Paul P.; Hurst, Mark R. H.
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Sustained software development, not number of citations or journal choice, is indicative of accurate bioinformatic software
err2022-02-16
err10
errOAAI
errGardner, Paul P.; Paterson, James M.; McGimpsey, Stephanie; Ashari-Ghomi, Fatemeh; Umu, Sinan U.; Pawlik, Aleksandra; Gavryushkin, Alex; Black, Michael A.
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SorTn-seq: a high-throughput functional genomics approach to discovering regulators of bacterial gene expression
err2021-08-04
err11
PREAI
errSmith, Leah M.; Jackson, Simon A.; Gardner, Paul P.; Fineran, Peter C.
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Evolution of virulence in a novel family of transmissible mega-plasmids
err2021-05-24
err6
errOAAI
errSitter, Thomas L.; Vaughan, Amy L.; Schoof, Marion; Jackson, Simon A.; Glare, Travis R.; Cox, Murray P.; Fineran, Peter C.; Gardner, Paul P.; Hurst, Mark R. H.
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On the optimistic performance evaluation of newly introduced bioinformatic methods
err2021-05-11
err17
errOAAI
errBuchka, Stefan; Hapfelmeier, Alexander; Gardner, Paul P.; Wilson, Rory; Boulesteix, Anne-Laure
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TISIGNER.com: web services for improving recombinant protein production
err2021-03-21
err1
errOAAI
errBhandari, Bikash K.; Lim, Chun Shen; Gardner, Paul P.
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ncVarDB: a manually curated database for pathogenic non-coding variants and benign controls
err2020-12-01
err11
errOAAI
errBiggs, Harry; Parthasarathy, Padmini; Gavryushkina, Alexandra; Gardner, Paul P.
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An evaluation of the accuracy and speed of metagenome analysis tools (vol 6, 19233, 2016)
err2020-04-20
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errOAAI
errLindgreen, Stinus; Adair, Karen L.; Gardner, Paul P.
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A draft genome sequence of the elusive giant squid, Architeuthis dux
err2020-01-16
err35
errOAAI
errda Fonseca, Rute R.; Couto, Alvarina; Machado, Andre M.; Brejova, Brona; Albertin, Carolin B.; Silva, Filipe; Gardner, Paul; Baril, Tobias; Hayward, Alex; Campos, Alexandre; Ribeiro, Angela M.; Barrio-Hernandez, Inigo; Hoving, Henk-Jan; Tafur-Jimenez, Ricardo; Chu, Chong; Frazao, Barbara; Petersen, Bent; Penaloza, Fernando; Musacchia, Francesco; Alexander, Graham C., Jr.; Osorio, Hugo; Winkelmann, Inger; Simakov, Oleg; Rasmussen, Simon; Rahman, M. Ziaur; Pisani, Davide; Vinther, Jakob; Jarvis, Erich; Zhang, Guojie; Strugnell, Jan M.; Castro, L. Filipe C.; Fedrigo, Olivier; Patricio, Mateus; Li, Qiye; Rocha, Sara; Antunes, Agostinho; Wu, Yufeng; Ma, Bin; Sanges, Remo; Vinar, Tomas; Blagoev, Blagoy; Sicheritz-Ponten, Thomas; Nielsen, Rasmus; Gilbert, M. Thomas P.
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Essential guidelines for computational method benchmarking
err2019-06-20
err90
errOAAI
errWeber, Lukas M.; Saelens, Wouter; Cannoodt, Robrecht; Soneson, Charlotte; Hapfelmeier, Alexander; Gardner, Paul P.; Boulesteix, Anne-Laure; Saeys, Yvan; Robinson, Mark D.
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Transcriptional noise and exaptation as sources for bacterial sRNAs
err2019-03-05
err24
errOAAI
errJose, Bethany R.; Gardner, Paul P.; Barquist, Lars
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Genomic correlates of extraintestinal infection are linked with changes in cell morphology in Campylobacter jejuni
err2019-02-01
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errOAAI
errWheeler, Nicole E.; Blackmore, Timothy; Reynods, Angela D.; Midwinter, Anne C.; Marshall, Jonathan; French, Nigel P.; Savoian, Matthew S.; Gardner, Paul P.; Biggs, Patrick J.
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Towards robust and repeatable sampling methods in eDNA-based studies
err2018-06-14
err140
errOAAI
errDickie, Ian A.; Boyer, Stephane; Buckley, Hannah L.; Duncan, Richard P.; Gardner, Paul P.; Hogg, Ian D.; Holdaway, Robert J.; Lear, Gavin; Makiola, Andreas; Morales, Sergio E.; Powell, Jeff R.; Weaver, Louise
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An Evaluation of Function of Multicopy Noncoding RNAs in Mammals Using ENCODE/FANTOM Data and Comparative Genomics
err2018-04-03
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errOAAI
errHoeppner, Marc P.; Denisenko, Elena; Gardner, Paul P.; Schmeier, Sebastian; Poole, Anthony M.
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Genomic, Transcriptomic, and Phenotypic Analyses of Neisseria meningitidis Isolates from Disease Patients and Their Household Contacts
err2017-12-26
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errRen, Xiaoyun; Eccle, David A.; Greig, Gabrielle A.; Clapham, Jane; Wheeler, Nicole E.; Lindgreen, Stinus; Gardner, Paul P.; MacKichan, Joanna K.
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Analysis of the genome of the New Zealand giant collembolan (Holacanthella duospinosa) sheds light on hexapod evolution
err2017-10-17
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errWu, Chen; Jordan, Melissa D.; Newcomb, Richard D.; Gemmell, Neil J.; Bank, Sarah; Meusemann, Karen; Dearden, Peter K.; Duncan, Elizabeth J.; Grosser, Sefanie; Rutherford, Kim; Gardner, Paul P.; Crowhurst, Ross N.; Steinwender, Bernd; Tooman, Leah K.; Stevens, Mark I.; Buckley, Thomas R.
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Why so narrow: Distribution of anti-sense regulated, type I toxin-antitoxin systems compared with type II and type III systems
err2017-02-01
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errOAAI
errCoray, Dorien S.; Wheeler, Nicole E.; Heinemann, Jack A.; Gardner, Paul P.
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