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Kiyoshi Asai

University of Tokyo

48H-index
231Paper Count
1.3WCitation Count
Published Papers 43
Publication Date
Gradient-based optimization for mRNA sequence design
err2026-09-10
err0
errOAAI
errHongmin Li; Goro Terai; Takumi Otagaki; Kiyoshi Asai; null
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PseudoknotVisualizer: Visualization of pseudoknots on three-dimensional RNA structures
err2025-11-21
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PREAI
errOtagaki, Takumi; Terai, Goro; Asai, Kiyoshi; Iwakiri, Junichi
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Development of PCR primers enabling the design of flexible sticky ends for efficient concatenation of long DNA fragments
err2024-01-01
err2
errOAAI
errNomura, Kohei; Onda, Kaoru; Murase, Hirotaka; Hashiya, Fumitaka; Ono, Yukiteru; Terai, Goro; Oka, Natsuhisa; Asai, Kiyoshi; Suzuki, Daisuke; Takahashi, Naho; Hiraoka, Haruka; Inagaki, Masahito; Kimura, Yasuaki; Shimizu, Yoshihiro; Abe, Naoko; Abe, Hiroshi
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PBSIM3: a simulator for all types of PacBio and ONT long reads
err2022-12-01
err24
errOAAI
errOno, Yukiteru; Hamada, Michiaki; Asai, Kiyoshi
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Remarkable improvement in detection of readthrough downstream-of-gene transcripts by semi-extractable RNA-sequencing
errRNA
IF5
err2022-11-16
err2
errOAAI
errIwakiri, Junichi; Tanaka, Kumiko; Chujo, Takeshi; Takakuwa, Hiro; Yamazaki, Tomohiro; Terai, Goro; Asai, Kiyoshi; Hirose, Tetsuro
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DDX41 coordinates RNA splicing and transcriptional elongation to prevent DNA replication stress in hematopoietic cells
errLEUKEMIA
IF13.4
err2022-10-14
err20
errOAAI
errShinriki, Satoru; Hirayama, Mayumi; Nagamachi, Akiko; Yokoyama, Akihiko; Kawamura, Takeshi; Kanai, Akinori; Kawai, Hidehiko; Iwakiri, Junichi; Liu, Rin; Maeshiro, Manabu; Tungalag, Saruul; Tasaki, Masayoshi; Ueda, Mitsuharu; Tomizawa, Kazuhito; Kataoka, Naoyuki; Ideue, Takashi; Suzuki, Yutaka; Asai, Kiyoshi; Tani, Tokio; Inaba, Toshiya; Matsui, Hirotaka
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A streamlined strain engineering workflow with genome-wide screening detects enhanced protein secretion in Komagataella phaffii
err2022-06-08
err7
errOAAI
errIto, Yoichiro; Ishigami, Misa; Terai, Goro; Nakamura, Yasuyuki; Hashiba, Noriko; Nishi, Teruyuki; Nakazawa, Hikaru; Hasunuma, Tomohisa; Asai, Kiyoshi; Umetsu, Mitsuo; Ishii, Jun; Kondo, Akihiko
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m6A modification of HSATIII lncRNAs regulates temperature-dependent splicing
err2021-06-29
err36
errOAAI
errNinomiya, Kensuke; Iwakiri, Junichi; Aly, Mahmoud Khamis; Sakaguchi, Yuriko; Adachi, Shungo; Natsume, Tohru; Terai, Goro; Asai, Kiyoshi; Suzuki, Tsutomu; Hirose, Tetsuro
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Exchange of endogenous and heterogeneous yeast terminators in Pichia pastoris to tune mRNA stability and gene expression
err2020-12-01
err42
errOAAI
errIto, Yoichiro; Terai, Goro; Ishigami, Misa; Hashiba, Noriko; Nakamura, Yasuyuki; Bamba, Takahiro; Kumokita, Ryota; Hasunuma, Tomohisa; Asai, Kiyoshi; Ishii, Jun; Kondo, Akihiko
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Free-Energy Calculation of Ribonucleic Inosines and Its Application to Nearest-Neighbor Parameters
err2020-07-29
err1
errOAAI
errSakuraba, Shun; Iwakiri, Junichi; Hamada, Michiaki; Kameda, Tomoshi; Tsuji, Genichiro; Kimura, Yasuaki; Abe, Hiroshi; Asai, Kiyoshi
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LncRNA-dependent nuclear stress bodies promote intron retention through SR protein phosphorylation
err2019-11-29
err100
errOAAI
errNinomiya, Kensuke; Adachi, Shungo; Natsume, Tohru; Iwakiri, Junichi; Terai, Goro; Asai, Kiyoshi; Hirose, Tetsuro
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A robust model for quantitative prediction of the silencing efficacy of wild-type and A-to-I edited miRNAs
err2019-11-01
err1
errOAAI
errTian, Shen; Terai, Goro; Kobayashi, Yoshiaki; Kimura, Yasuaki; Abe, Hiroshi; Asai, Kiyoshi; Ui-Tei, Kumiko
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Jointly aligning a group of DNA reads improves accuracy of identifying large deletions
err2017-11-22
err2
errOAAI
errShrestha, Anish M. S.; Frith, Martin C.; Asai, Kiyoshi; Richard, Hugues
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Genome sequence of Aspergillus luchuensis NBRC 4314
err2016-09-20
err43
errOAAI
errYamada, Osamu; Machida, Masayuki; Hosoyama, Akira; Goto, Masatoshi; Takahashi, Toru; Futagami, Taiki; Yamagata, Youhei; Takeuchi, Michio; Kobayashi, Tetsuo; Koike, Hideaki; Abe, Keietsu; Asai, Kiyoshi; Arita, Masanori; Fujita, Nobuyuki; Fukuda, Kazuro; Higa, Ken-ichi; Horikawa, Hiroshi; Ishikawa, Takeaki; Jinno, Koji; Kato, Yumiko; Kirimura, Kohtaro; Mizutani, Osamu; Nakasone, Kaoru; Sano, Motoaki; Shiraishi, Yohei; Tsukahara, Masatoshi; Gomi, Katsuya
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