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Jan Brezovský

adam mickiewicz university

37H-index
173Paper Count
6.9KCitation Count
Published Papers 42
Publication Date
Unlocking High-Throughput Investigation of Transport Tunnels in Enzymes Using Coarse-Grained Simulation Methods
err2026-01-01
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PREAI
errMandal, Nishita; Stevens, Jan A.; Poma, Adolfo B.; Surpeta, Bartlomiej; Sequeiros-Borja, Carlos; Thirunavukarasu, Aravind Selvaram; Marrink, Siewert J.; Brezovsky, Jan
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Message hidden in α-helices-toward a better understanding of plant ABCG transporters' multispecificity
err2025-04-12
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PREAI
errBiala-Leonhard, Wanda; Bigos, Aleksandra; Brezovsky, Jan; Jasinski, Michal
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Discovery of new inhibitors of nuclease MRE11
err2025-03-01
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PREAI
errNikulenkov, Fedor; Carbain, Benoit; Biswas, Raktim; Havel, Stepan; Prochazkova, Jana; Sisakova, Alexandra; Zacpalova, Magdalena; Chavdarova, Melita; Marini, Victoria; Vsiansky, Vit; Weisova, Veronika; Slavikova, Kristina; Biradar, Dhanraj; Khirsariya, Prashant; Vitek, Marco; Sedlak, David; Bartunek, Petr; Daniel, Lukas; Brezovsky, Jan; Damborsky, Jiri; Paruch, Kamil; Krejci, Lumir
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Water Migration through Enzyme Tunnels Is Sensitive to the Choice of Explicit Water Model
err2024-12-16
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errOAAI
errThirunavukarasu, Aravind Selvaram; Szleper, Katarzyna; Tanriver, Gamze; Marchlewski, Igor; Mitusinska, Karolina; Gora, Artur; Brezovsky, Jan
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Water will Find Its Way: Transport through Narrow Tunnels in Hydrolases
err2024-04-26
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errOAAI
errSequeiros-Borja, Carlos; Surpeta, Bartlomiej; Thirunavukarasu, Aravind Selvaram; Foumthuim, Cedrix J. Dongmo; Marchlewski, Igor; Brezovsky, Jan
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Restriction of access to the central cavity is a major contributor to substrate selectivity in plant ABCG transporters
err2023-03-23
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errOAAI
errPakula, Konrad; Sequeiros-Borja, Carlos; Biala-Leonhard, Wanda; Pawela, Aleksandra; Banasiak, Joanna; Bailly, Aurelien; Radom, Marcin; Geisler, Markus; Brezovsky, Jan; Jasinski, Michal
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Nano-structured hydrotrope-caged cytochrome c with boosted stability in harsh environments: a molecular insight
err2023-01-01
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errOAAI
errBharadwaj, Pranav; Sarkar, Dheeraj Kumar; Bisht, Meena; Shet, Sachin M. M.; Kotrappanavar, Nataraj Sanna; Lokesh, Veeresh; Franklin, Gregory; Brezovsky, Jan; Mondal, Dibyendu
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Common Dynamic Determinants Govern Quorum Quenching Activity in N-Terminal Serine Hydrolases
err2022-05-13
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errOAAI
errSurpeta, Bartlomiej; Grulich, Michal; Palyzova, Andrea; Maresova, Helena; Brezovsky, Jan
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CaverDock: A Novel Method for the Fast Analysis of Ligand Transport
err2020-09-01
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errOAAI
errFilipovic, Jiri; Vavra, Ondrej; Plhak, Jan; Bednar, David; Marques, Sergio M.; Brezovsky, Jan; Matyska, Ludek; Damborsky, Jiri
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Recent advances in user-friendly computational tools to engineer protein function
err2020-07-31
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errOAAI
errSequeiros-Borja, Carlos Eduardo; Surpeta, Bartlomiej; Brezovsky, Jan
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Deciphering the Structural Basis of High Thermostability of Dehalogenase from Psychrophilic Bacterium Marinobacter sp. ELB17
err2019-10-28
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errOAAI
errChrast, Lukas; Tratsiak, Katsiaryna; Planas-Iglesias, Joan; Daniel, Lukas; Prudnikova, Tatyana; Brezovsky, Jan; Bednar, David; Smatanova, Ivana Kuta; Chaloupkova, Radka; Damborsky, Jiri
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Caver Web 1.0: identification of tunnels and channels in proteins and analysis of ligand transport
err2019-05-22
err158
errOAAI
errStourac, Jan; Vavra, Ondrej; Kokkonen, Piia; Filipovic, Jiri; Pinto, Gaspar; Brezovsky, Jan; Damborsky, Jiri; Bednar, David
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Molecular Gating of an Engineered Enzyme Captured in Real Time
err2018-12-03
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PREAI
errKokkonen, Piia; Sykora, Jan; Prokop, Zbynek; Ghose, Avisek; Bednar, David; Amaro, Mariana; Beerens, Koen; Bidmanova, Sarka; Slanska, Michaela; Brezovsky, Jan; Damborsky, Jiri; Hof, Martin
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Evolutionary Analysis As a Powerful Complement to Energy Calculations for Protein Stabilization
err2018-08-31
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PREAI
errBeerens, Koen; Mazurenko, Stanislav; Kunka, Antonin; Marques, Sergio M.; Hansen, Niels; Musil, Milos; Chaloupkova, Radka; Waterman, Jitka; Brezovsky, Jan; Bednar, David; Prokop, Zbynek; Damborsky, Jiri
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Impact of the access tunnel engineering on catalysis is strictly ligand-specific
err2018-03-25
err58
errOAAI
errKaushik, Shubhangi; Marques, Sergio M.; Khirsariya, Prashant; Paruch, Kamil; Libichova, Lenka; Brezovsky, Jan; Prokop, Zbynek; Chaloupkova, Radka; Damborsky, Jiri
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Exploration of Enzyme Diversity by Integrating Bioinformatics with Expression Analysis and Biochemical Characterization
err2018-02-14
err59
PREAI
errVanacek, Pavel; Sebestova, Eva; Babkova, Petra; Bidmanova, Sarka; Daniel, Lukas; Dvorak, Pavel; Stepankova, Veronika; Chaloupkova, Radka; Brezovsky, Jan; Prokop, Zbynek; Damborsky, Jiri
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Computer-assisted engineering of hyperstable fibroblast growth factor 2
err2018-01-24
err56
errOAAI
errDvorak, Pavel; Bednar, David; Vanacek, Pavel; Balek, Lukas; Eiselleova, Livia; Stepankova, Veronika; Sebestova, Eva; Bosakova, Michaela Kunova; Konecna, Zaneta; Mazurenko, Stanislav; Kunka, Antonin; Vanova, Tereza; Zoufalova, Karolina; Chaloupkova, Radka; Brezovsky, Jan; Krejci, Pavel; Prokop, Zbynek; Dvorak, Petr; Damborsky, Jiri
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Catalytic Cycle of Haloalkane Dehalogenases Toward Unnatural Substrates Explored by Computational Modeling
err2017-07-28
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PREAI
errMarques, Sergio M.; Dunajova, Zuzana; Prokop, Zbynek; Chaloupkova, Radka; Brezovsky, Jan; Damborsky, Jiri
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