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J

Judith B. Zaugg

European Molecular Biology Laboratory

33H-index
153Paper Count
6.4KCitation Count
Published Papers 56
Publication Date
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Analysis of blood-based DNA methylation scores reveals associations with shared cohabitation duration in cohabiting pairs
errThe Journals of Gerontology: Series A
IF0
err2026-05-01
err0
PREAI
errJoshua Stevenson-Hoare, PhD; Martin Stoffel, PhD; Ben Schöttker, PhD; Bernd Holleczek, MD; Judith Zaugg, PhD; Beate Ditzen, PhD; Hermann Brenner, MD
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Dual role of ZIC2 during neural induction: from priming transcription factor to enhancer activator
errNucleic Acids Research
IF13.1
err2026-04-25
err0
errOAAI
errMaría Mariner-Faulí; Víctor Sánchez-Gaya; Sarah Malika Robert; Patricia Respuela; Sara de la Cruz-Molina; Sara Lobato-Moreno; Matteo Trovato; Karin D Prummel; Kyung-Min Noh; Judith B Zaugg; Álvaro Rada-Iglesias; null
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Reprogramming of stroma-derived chemokine networks drives the loss of tissue organization in nodal B cell lymphoma
errNature Cancer
IF28.5
err2026-03-25
err0
errOAAI
errFelix Czernilofsky; Anna Mathioudaki; Lea Jopp-Saile; Raphael Lutz; Dominik Vonficht; Xi Wang; Christina Schniederjohann; Harald Voehringer; Tobias Roider; Marc-Andrea Baertsch; Claus Rodemer; Henry Löffler-Wirth; Michael Grau; Donnacha Fitzgerald; Johannes Mammen; Jan Kosla; Nora Liebers; Peter-Martin Bruch; Diana Ordoñez-Rueda; Alexander Brobeil; Gunhild Mechtersheimer; Caroline Pabst; Carsten Müller-Tidow; Andreas Trumpp; Marc Seifert; Frank Neumann; Mathias Heikenwälder; Vladimir Benes; Wolfgang Huber; Jörg Distler; Georg Lenz; Hans Binder; Reiner Siebert; Garry P. Nolan; Moritz Gerstung; Judith B. Zaugg; Daniel Hübschmann; Simon Haas; Sascha Dietrich
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Single-cell ultra-high-throughput multiplexed chromatin accessibility and gene expression sequencing (SUM-seq)
errNature Protocols
IF16
err2026-02-26
err0
PREAI
errUmut Yildiz; Sara Lobato-Moreno; Annique Claringbould; Hanke Gwendolyn Bauersachs; Nila H. Servaas; Evi P. Vlachou; Christian Arnold; Víctor Campos-Fornés; Karin D. Prummel; Judith B. Zaugg; Kyung Min Noh; Mikael Marttinen
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errSave
Escape from X inactivation is directly modulated by Xist noncoding RNA
errNature Cell Biology
IF19.1
err2025-12-15
err0
errOAAI
errAntonia Hauth; Jasper Panten; Emma Kneuss; Christel Picard; Nicolas Servant; Isabell Rall; Yuvia A. Pérez-Rico; Lena Clerquin; Nila Servaas; Laura Villacorta; Ferris Jung; Christy Luong; Howard Y. Chang; Judith B. Zaugg; Oliver Stegle; Duncan T. Odom; Edith Heard; Agnese Loda
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An inflammatory T-cell-stromal axis contributes to hematopoietic stem/progenitor cell failure and clonal evolution in human myelodysplastic syndrome
errNature Communications
IF15.7
err2025-11-18
err0
errOAAI
errLanpeng Chen; Yujie Bian; Eline Pronk; Claire van Dijk; Tim V.D. van Tienhoven; Remco M. Hoogenboezem; Eric M. Bindels; Dennis Bosch; Sadaf Fazeli; Aniek O. de Graaf; Theresia M. Westers; Maksim Kholmatov; Judith B. Zaugg; Pedro L. Moura; Eva Hellström-Lindberg; Arjan A. van de Loosdrecht; Joop H. Jansen; Mathijs A. Sanders; Marc H.G.P. Raaijmakers
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Inflammatory stromal and T cells mediate human bone marrow niche remodeling in clonal hematopoiesis and myelodysplasia
errNature Communications
IF15.7
err2025-11-18
err0
errOAAI
errKarin D. Prummel; Kevin Woods; Maksim Kholmatov; Eric C. Schmitt; Evi P. Vlachou; Mayssa Labyadh; Rebekka Wehner; Gereon Poschmann; Kai Stühler; Susann Winter; Uta Oelschlaegel; Manja Wobus; Logan S. Schwartz; Pedro L. Moura; Eva Hellström-Lindberg; Krishnaraj Rajalingam; Matthias Theobald; Jennifer J. Trowbridge; Clémence Carron; Thierry Jaffredo; Marc Schmitz; Uwe Platzbecker; Judith B. Zaugg; Borhane Guezguez
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Accumulation of Lymphoid Progenitors with Defective B Cell Differentiation and of Putative Natural Killer Progenitors in Aging Human Bone Marrow
errInternational Journal of Molecular Sciences 2025, Vol. 26, Page 10467
IF4.9
err2025-10-28
err0
errOAAI
errLaura Poisa-Beiro; Jonathan J. M. Landry; Aleksandr Cherdintsev; Michael Kardorff; Volker Eckstein; Laura Villacorta; Judith Zaugg; Anne-Claude Gavin; Vladimir Benes; Simon Raffel; Anthony D. Ho
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errSave
FootprintCharter: unsupervised detection and quantification of footprints in single molecule footprinting data
errBIOINFORMATICS
IF5.4
err2025-10-01
err0
PREAI
errBarzaghi, Guido; Krebs, Arnaud R.; Zaugg, Judith B.
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errSave
A noncanonical role of glycolytic metabolites controlling the timing of mouse embryo segmentation
errScience Advances
IF12.5
err2025-09-19
err0
errOAAI
errHidenobu Miyazawa; Jona Rada; Nicole Prior; Paul Gerald Layague Sanchez; Emilia Esposito; Daria Bunina; Charles Girardot; Judith Zaugg; Alexander Aulehla
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errSave
DISRUPTED HARMONY: IFN-RESPONSIVE T CELLS AND INFLAMMATORY MSCS RESHAPE THE BONE MARROW NICHE IN CHIP AND MDS THE TITO BASTIANELLO AND MDSF YOUNG INVESTIGATORS AWARDS
errLEUKEMIA RESEARCH
IF2.2
err2025-09-01
err0
PREAI
errPrummel, Karin; Woods, Kevin; Kholmatov, Maksim; Schmitt, Eric; Vlachou, Evi; Poschmann, Gereon; Stuhler, Kai; Wehner, Rebekka; Schmitz, Marc; Winter, Susann; Oelschlagel, Uta; Schwartz, Logan; Moura, Pedro; Hellstrom-Lindberg, Eva; Theobald, Matthias; Trowbridge, Jennifer; Platzbecker, Uwe; Zaugg, Judith; Guezguez, Borhane
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Single-cell ultra-high-throughput multiplexed chromatin and RNA profiling reveals gene regulatory dynamics
errNATURE METHODS
IF32.1
err2025-05-26
err1
errOAAI
errLobato-Moreno, Sara; Yildiz, Umut; Claringbould, Annique; Servaas, Nila H.; Vlachou, Evi P.; Arnold, Christian; Bauersachs, Hanke Gwendolyn; Campos-Fornes, Victor; Kim, Minyoung; Berest, Ivan; Prummel, Karin D.; Noh, Kyung-Min; Marttinen, Mikael; Zaugg, Judith B.
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A Senescent Cluster in Aged Human Hematopoietic Stem Cell Compartment as Target for Senotherapy
errINTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
IF4.9
err2025-01-17
err0
errOAAI
errPoisa-Beiro, Laura; Landry, Jonathan J. M.; Yan, Bowen; Kardorff, Michael; Eckstein, Volker; Villacorta, Laura; Krammer, Peter H.; Zaugg, Judith; Gavin, Anne-Claude; Zhou, Daohong; Raffel, Simon; Ho, Anthony D.
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errSave
HIPSD&R-seq enables scalable genomic copy number and transcriptome profiling
errGENOME BIOLOGY
IF9.4
err2024-12-18
err0
errOAAI
errOtonicar, Jan; Lazareva, Olga; Mallm, Jan-Philipp; Simovic-Lorenz, Milena; Philippos, George; Sant, Pooja; Parekh, Urja; Hammann, Linda; Li, Albert; Yildiz, Umut; Marttinen, Mikael; Zaugg, Judith; Noh, Kyung Min; Stegle, Oliver; Ernst, Aurelie
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Specific U6 Small Nucleolar RNAs Are Present on the Surface of Primary AML Specimens and Are Accompanied By Short Fragments of Longer RNAs
errBLOOD
IF23.1
err2024-11-05
err0
PREAI
errBrysting, Josephine Jagd; Rohde, Christian; Villacorta, Laura; Benes, Vladimir; Renders, Simon; Zaugg, Judith; Mueller-Tidow, Carsten
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Integration of genetic and chromatin modification data pinpoints autoimmune-specific remodeling of enhancer landscape in CD4+ T cells
errCELL REPORTS
IF6.9
err2024-10-01
err0
errOAAI
errDaga, Neha; Servaas, Nila H.; Kisand, Kai; Moonen, Dewi; Arnold, Christian; Reyes-Palomares, Armando; Kaleviste, Epp; Kingo, Kulli; Kuuse, Reet; Ulst, Katrin; Steinmetz, Lars; Peterson, Part; Nakic, Nikolina; Zaugg, Judith B.
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Histone H3.3 lysine 9 and 27 control repressive chromatin at cryptic enhancers and bivalent promoters
errNATURE COMMUNICATIONS
IF15.7
err2024-08-30
err1
errOAAI
errTrovato, Matteo; Bunina, Daria; Yildiz, Umut; Fernandez-Novel Marx, Nadine; Uckelmann, Michael; Levina, Vita; Perez, Yekaterina; Janeva, Ana; Garcia, Benjamin A.; Davidovich, Chen; Zaugg, Judith B.; Noh, Kyung-Min
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errSave
Basis of gene-specific transcription regulation by the Integrator complex
errMOLECULAR CELL
IF16.6
err2024-07-01
err7
errOAAI
errSabath, Kevin; Nabih, Amena; Arnold, Christian; Moussa, Rim; Domjan, David; Zaugg, Judith B.; Jonas, Stefanie
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APOBEC2 safeguards skeletal muscle cell fate through binding chromatin and regulating transcription of non- muscle genes during myoblast differentiation
errPROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
IF9.1
err2024-04-16
err0
errOAAI
errLorenzo, J. Paulo; Molla, Linda; Amro, Elias Moris; Ibarra, Ignacio L.; Ruf, Sandra; Neber, Cedrik; Gkougkousis, Christos; Ridani, Jana; Subramani, Poorani Ganesh; Boulais, Jonathan; Harjanto, Dewi; Vonica, Alin; Di Noia, Javier M.; Dieterich, Christoph; Zaugg, Judith B.; Papavasiliou, F. Nina
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A specific ribomethylome pattern in lung cancer is associated with increased risk of metastasis
errCANCER RESEARCH
IF16.6
err2024-03-22
err0
PREAI
errPauli, Cornelius; Heid, Daniel; Rohde, Christian; Krall, Nadja; Delaunay, Sylvain; Kienhoefer, Michael; Tischer, Christian; Allgauer, Michael; Blank, Maximilian Felix; Zhou, Fengbiao; Kardorff, Michael; Thomas, Michael; Winter, Hauke; Sandmann, Sarah; Kriegsmann, Marc; Schneider, Marc; Muley, Thomas; Brobeil, Alexander; Baumer, Nicole; Baumer, Sebastian; Raffel, Simon; Stenzinger, Albrecht; Schirmacher, Peter; Lu, Junyan; Zaugg, Judith; Frye, Michaela; Muller-Tidow, Carsten
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Research Directions

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Co-authors
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Kristian Helin
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