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J

Jüergen Cox

Max Planck Institute of Biochemistry

35H-index
95Paper Count
1.7WCitation Count
Published Papers 37
Publication Date
AI proteomics: from protein identification to virtual cells
err2026-07-28
err0
PREAI
errYingying Sun; Jun A; Zhiwei Liu; Rui Sun; Liujia Qian; Samuel H. Payne; Wout Bittremieux; Markus Ralser; Chen Li; Yi Chen; Zhen Dong; Yasset Perez-Riverol; Asif Khan; Chris Sander; Ruedi Aebersold; Juan Antonio Vizcaíno; Jonathan R. Krieger; Jianhua Yao; Wen Han; Linfeng Zhang; Yunping Zhu; Yue Xuan; Benjamin Boyang Sun; Liang Qiao; Henning Hermjakob; Haixu Tang; Huanhuan Gao; Yamin Deng; Qing Zhong; Cheng Chang; Nuno Bandeira; Ming Li; Weinan E; Siqi Sun; Yuedong Yang; Gilbert S. Omenn; Yue Zhang; Ping Xu; Yan Fu; Xiaowen Liu; Christopher M. Overall; Yu Wang; Eric W. Deutsch; Luonan Chen; Jürgen Cox; Vadim Demichev; Fuchu He; Jiaxing Huang; Huilin Jin; Chao Liu; Nan Li; Zhongzhi Luan; Jiangning Song; Kaicheng Yu; Wanggen Wan; Tai Wang; Kang Zhang; Le Zhang; Peter A. Bell; Matthias Mann; Bing Zhang; Tiannan Guo
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Bimodal Peptide Collision Cross Section Distribution Reflects Two Stable Conformations in the Gas Phase
err2026-04-29
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errOAAI
errJuan Restrepo; Daniel Szoelloesi; Tobias Kiermeyer; Christoph Wichmann; Helmut Grubmüller; Jürgen Cox
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Facilitating analysis and dissemination of proteomics data through metadata integration in MaxQuant
err2025-09-25
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errOAAI
errWalter Viegener; Shamil Urazbakhtin; Daniela Ferretti; Jürgen Cox; Jinqiu Xiao
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Isobaric Labeling Update in MaxQuant
err2025-02-25
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errOAAI
errFerretti, Daniela; Kyriakidou, Pelagia; Xiao, Jinqiu; Urazbakhtin, Shamil; De Nart, Carlo; Cox, Juergen
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Multicenter Longitudinal Quality Assessment of MS-Based Proteomics in Plasma and Serum
err2025-02-07
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errOAAI
errKardell, Oliver; Gronauer, Thomas; von Toerne, Christine; Merl-Pham, Juliane; Konig, Ann-Christine; Barth, Teresa K.; Mergner, Julia; Ludwig, Christina; Tueshaus, Johanna; Giesbertz, Pieter; Breimann, Stephan; Schweizer, Lisa; Mueller, Torsten; Kliewer, Georg; Distler, Ute; Gomez-Zepeda, David; Popp, Oliver; Qin, Di; Teupser, Daniel; Cox, Juergen; Imhof, Axel; Kuester, Bernhard; Lichtenthaler, Stefan F.; Krijgsveld, Jeroen; Tenzer, Stefan; Mertins, Philipp; Coscia, Fabian; Hauck, Stefanie M.
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π-HuB: the proteomic navigator of the human body (Vol 636, pg 322, 2024)
errNATURE
IF48.5
err2024-12-23
err0
PREAI
errHe, Fuchu; Aebersold, Ruedi; Baker, Mark S.; Bian, Xiuwu; Bo, Xiaochen; Chan, Daniel W.; Chang, Cheng; Chen, Luonan; Chen, Xiangmei; Chen, Yu-Ju; Cheng, Heping; Collins, Ben C.; Corrales, Fernando; Cox, Juergen; E, Weinan; Van Eyk, Jennifer E.; Fan, Jia; Faridi, Pouya; Figeys, Daniel; Gao, George Fu; Gao, Wen; Gao, Zu-Hua; Goda, Keisuke; Goh, Wilson Wen Bin; Gu, Dongfeng; Guo, Changjiang; Guo, Tiannan; He, Yuezhong; Heck, Albert J. R.; Hermjakob, Henning; Hunter, Tony; Iyer, Narayanan Gopalakrishna; Jiang, Ying; Jimenez, Connie R.; Joshi, Lokesh; Kelleher, Neil L.; Li, Ming; Li, Yang; Lin, Qingsong; Liu, Cui Hua; Liu, Fan; Liu, Guang-Hui; Liu, Yansheng; Liu, Zhihua; Low, Teck Yew; Lu, Ben; Mann, Matthias; Meng, Anming; Moritz, Robert L.; Nice, Edouard; Ning, Guang; Omenn, Gilbert S.; Overall, Christopher M.; Palmisano, Giuseppe; Peng, Yaojin; Pineau, Charles; Poon, Terence Chuen Wai; Purcell, Anthony W.; Qiao, Jie; Reddel, Roger R.; Robinson, Phillip J.; Roncada, Paola; Sander, Chris; Sha, Jiahao; Song, Erwei; Srivastava, Sanjeeva; Sun, Aihua; Sze, Siu Kwan; Tang, Chao; Tang, Liujun; Tian, Ruijun; Vizcaino, Juan Antonio; Wang, Chanjuan; Wang, Chen; Wang, Xiaowen; Wang, Xinxing; Wang, Yan; Weiss, Tobias; Wilhelm, Mathias; Winkler, Robert; Wollscheid, Bernd; Wong, Limsoon; Xie, Linhai; Xie, Wei; Xu, Tao; Xu, Tianhao; Yan, Liying; Yang, Jing; Yang, Xiao; Yates, John; Yun, Tao; Zhai, Qiwei; Zhang, Bing; Zhang, Hui; Zhang, Lihua; Zhang, Lingqiang; Zhang, Pingwen; Zhang, Yukui; Zheng, Yu Zi; Zhong, Qing; IT-HuB Consortium, Daniel W.
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Initial recommendations for performing, benchmarking and reporting single-cell proteomics experiments
err2023-03-02
err62
errOAAI
errGatto, Laurent; Aebersold, Ruedi; Cox, Juergen; Demichev, Vadim; Derks, Jason; Emmott, Edward; Franks, Alexander M.; Ivanov, Alexander R.; Kelly, Ryan T.; Khoury, Luke; Leduc, Andrew; MacCoss, Michael J.; Nemes, Peter; Perlman, David H.; Petelski, Aleksandra A.; Rose, Christopher M.; Schoof, Erwin M.; Van Eyk, Jennifer; Vanderaa, Christophe; Yates III, John R. R.; Slavov, Nikolai
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EASI-tag enables accurate multiplexed and interference-free MS2-based proteome quantification
err2018-06-18
err74
errOAAI
errWinter, Sebastian Virreira; Meier, Florian; Wichmann, Christoph; Cox, Juergen; Mann, Matthias; Meissner, Felix
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BoxCar acquisition method enables single-shot proteomics at a depth of 10,000 proteins in 100 minutes
err2018-05-07
err300
errOAAI
errMeier, Florian; Geyer, Philipp E.; Winter, Sebastian Virreira; Cox, Juergen; Mann, Matthias
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The MaxQuant computational platform for mass spectrometry-based shotgun proteomics
err2016-10-27
err3.1K
PREAI
errTyanova, Stefka; Temu, Tikira; Cox, Juergen
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Proteomic maps of breast cancer subtypes
err2016-01-04
err254
errOAAI
errTyanova, Stefka; Albrechtsen, Reidar; Kronqvist, Pauliina; Cox, Juergen; Mann, Matthias; Geiger, Tamar
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Machine Learning-based Classification of Diffuse Large B-cell Lymphoma Patients by Their Protein Expression Profiles
err2015-11-01
err77
errOAAI
errDeeb, Sally J.; Tyanova, Stefka; Hummel, Michael; Schmidt-Supprian, Marc; Cox, Juergen; Mann, Matthias
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The Impact II, a Very High-Resolution Quadrupole Time-of-Flight Instrument (QTOF) for Deep Shotgun Proteomics
err2015-07-01
err155
errOAAI
errBeck, Scarlet; Michalski, Annette; Raether, Oliver; Lubeck, Markus; Kaspar, Stephanie; Goedecke, Niels; Baessmann, Carsten; Hornburg, Daniel; Meier, Florian; Paron, Igor; Kulak, Nils A.; Cox, Juergen; Mann, Matthias
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Visualization of LC-MS/MS proteomics data in MaxQuant
err2015-03-05
err207
errOAAI
errTyanova, Stefka; Temu, Tikira; Carlson, Arthur; Sinitcyn, Pavel; Mann, Matthias; Cox, Juergen
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Recent developments in the technology of mass spectrometry-based clinical proteomics
err2014-07-01
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PREAI
errMann, M.; Cosica, F.; Kulak, N.; Pichler, G.; Tyanova, S.; Shaman, K.; Wisniewski, J.; Cox, J.
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Initial Quantitative Proteomic Map of 28 Mouse Tissues Using the SILAC Mouse
err2013-06-01
err209
errOAAI
errGeiger, Tamar; Velic, Ana; Macek, Boris; Lundberg, Emma; Kampf, Caroline; Nagaraj, Nagarjuna; Uhlen, Mathias; Cox, Juergen; Mann, Matthias
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In-depth Analysis of Cancer HLA-I Peptidomes
err2012-07-01
err0
PREAI
errBassani-Sternberg, M.; Michalski, A.; Cox, J.; Admon, A.; Mann, M.
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Feasibility of Large-Scale Phosphoproteomics with Higher Energy Collisional Dissociation Fragmentation (vol 9, pg 6786, 2010)
err2012-05-21
err11
errOAAI
errNagaraj, Nagarjuna; D'Souza, Rochelle C. J.; Cox, Juergen; Olsen, Jesper V.; Mann, Matthias
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