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R

Ronald M. Levy

Temple University

70H-index
296Paper Count
1.6WCitation Count
Published Papers 98
Publication Date
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Temporal Evolution of Drug Resistance to HIV Integrase Inhibitors
errViruses
IF3.5
err2026-05-08
err0
errOAAI
errIndrani Choudhuri; Jocelyn G. Olvera; Avik Biswas; Allan Haldane; Ronald M. Levy; Dmitry Lyumkis
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Results of a Large-Scale Study of the Binding of 50 Type II Inhibitors to 348 Kinases: The Role of Protein Reorganization
errJournal of Medicinal Chemistry
IF6.8
err2026-04-09
err0
errOAAI
errVardan H. Vardanyan; Allan Haldane; Howook Hwang; Dilek Coskun; Muyun Lihan; Edward B. Miller; Richard A. Friesner; Ronald M. Levy
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Predicting Water at the Protein Interface in Cryo-EM Structures from MD-Excess Chemical Potential
errBiophysical Journal
IF3.1
err2026-01-27
err0
errOAAI
errQinfang Sun; Sriram Aiyer; Avik Biswas; Allan Haldane; Sompriya Chatterjee; Nobuyuki Matubayasi; Dmitry Lyumkis; Ronald M. Levy
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Using phage display for rational engineering of a higher-affinity humanized 3’ phosphohistidine-specific antibody
errCommunications Chemistry
IF6.2
err2025-11-27
err0
errOAAI
errGregory D. Martyn; Rajasree Kalagiri; Gianluca Veggiani; Robyn L. Stanfield; Indrani Choudhuri; Margaux Sala; Jill Meisenhelder; Chao Chen; Avik Biswas; Ronald M. Levy; Dmitry Lyumkis; Ian A. Wilson; Tony Hunter; Sachdev S. Sidhu
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Predicting Side Chain Conformations in Folded Proteins by AlphaFold: Perspective and Challenges
errBiophysical Journal
IF3.1
err2025-09-20
err0
PREAI
errGia G. Maisuradze; Abhishek Thakur; Kisan Khatri; Allan Haldane; Ronald M. Levy
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errSave
Evolutionary sequence and structural basis for the distinct conformational landscapes of Tyr and Ser/Thr kinases
errNATURE COMMUNICATIONS
IF15.7
err2024-08-02
err1
errOAAI
errGizzio, Joan; Thakur, Abhishek; Haldane, Allan; Post, Carol Beth; Levy, Ronald M.
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errSave
Kinetic coevolutionary models predict the temporal emergence of HIV-1 resistance mutations under drug selection pressure
errPROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
IF9.1
err2024-04-01
err1
PREAI
errBiswas, Avik; Choudhuri, Indrani; Arnold, Eddy; Lyumkis, Dmitry; Haldane, Allan; Levy, Ronald M.
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errSave
Mechanisms of HIV-1 integrase resistance to dolutegravir and potent inhibition of drug-resistant variants
errSCIENCE ADVANCES
IF12.5
err2023-07-21
err11
errOAAI
errLi, Min; Passos, Dario Oliveira; Shan, Zelin; Smith, Steven J.; Sun, Qinfang; Biswas, Avik; Choudhuri, Indrani; Strutzenberg, Timothy S.; Haldane, Allan; Deng, Nanjie; Li, Zhaoyang; Zhao, Xue Zhi; Briganti, Lorenzo; Kvaratskhelia, Mamuka; Burke Jr, Terrence R. R.; Levy, Ronald M.; Hughes, Stephen H.; Craigie, Robert; Lyumkis, Dmitry
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Evolutionary divergence in the conformational landscapes of tyrosine vs serine/threonine kinases
errELIFE
IF0
err2022-12-23
err12
errOAAI
errGizzio, Joan; Thakur, Abhishek; Haldane, Allan; Levy, Ronald M.
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errSave
Structure-based virtual screening workflow to identify antivirals targeting HIV-1 capsid
errJOURNAL OF COMPUTER-AIDED MOLECULAR DESIGN
IF3.1
err2022-03-09
err4
errOAAI
errSun, Qinfang; Biswas, Avik; Vijayan, R. S. K.; Craveur, Pierrick; Forli, Stefano; Olson, Arthur J.; Castaner, Andres Emanuelli; Kirby, Karen A.; Sarafianos, Stefan G.; Deng, Nanjie; Levy, Ronald
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The generative capacity of probabilistic protein sequence models
errNATURE COMMUNICATIONS
IF15.7
err2021-11-02
err23
errOAAI
errMcGee, Francisco; Hauri, Sandro; Novinger, Quentin; Vucetic, Slobodan; Levy, Ronald M.; Carnevale, Vincenzo; Haldane, Allan
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Unique features of different classes of G-protein-coupled receptors revealed from sequence coevolutionary and structural analysis
errPROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS
IF2.8
err2021-10-09
err5
errOAAI
errDo, Hung N.; Haldane, Allan; Levy, Ronald M.; Miao, Yinglong
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errSave
Molecular Dynamics Free Energy Simulations Reveal the Mechanism for the Antiviral Resistance of the M66I HIV-1 Capsid Mutation
errVIRUSES-BASEL
IF3.5
err2021-05-15
err12
errOAAI
errSun, Qinfang; Levy, Ronald M.; Kirby, Karen A.; Wang, Zhengqiang; Sarafianos, Stefan G.; Deng, Nanjie
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errSave
Mi3-GPU: MCMC-based inverse Ising inference on GPUs for protein covariation analysis
errCOMPUTER PHYSICS COMMUNICATIONS
IF3.4
err2021-03-01
err15
errOAAI
errHaldane, Allan; Levy, Ronald M.
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errSave
Exploring the Free-Energy Landscape and Thermodynamics of Protein-Protein Association
errBIOPHYSICAL JOURNAL
IF3.1
err2020-09-01
err17
errOAAI
errTse, Celine; Wickstrom, Lauren; Kvaratskhelia, Mamuka; Gallicchio, Emilio; Levy, Ronald; Deng, Nanjie
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errSave
Insights into the energy landscapes of chromosome organization proteins from coevolutionary sequence variation and structural modeling
errPROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
IF9.1
err2020-01-10
err0
errOAAI
errLevy, Ronald M.
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errSave
Ligand Binding Thermodynamic Cycles: Hysteresis, the Locally Weighted Histogram Analysis Method, and the Overlapping States Matrix
errJOURNAL OF CHEMICAL THEORY AND COMPUTATION
IF5.5
err2019-11-19
err6
errOAAI
errCui, Di; Zhang, Bin W.; Tan, Zhiqiang; Levy, Ronald M.
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errSave
Absolute Protein Binding Free Energy Simulations for Ligands with Multiple Poses, a Thermodynamic Path That Avoids Exhaustive Enumeration of the Poses
errJOURNAL OF COMPUTATIONAL CHEMISTRY
IF4.8
err2019-10-17
err17
errOAAI
errSakae, Yoshitake; Zhang, Bin W.; Levy, Ronald M.; Deng, Nanjie
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errSave
Epistasis and entrenchment of drug resistance in HIV-1 subtype B
errELIFE
IF0
err2019-10-08
err28
errOAAI
errBiswas, Avik; Haldane, Allan; Arnold, Eddy; Levy, Ronald M.
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errSave
HIV-1 integrase tetramers are the antiviral target of pyridine-based allosteric integrase inhibitors
errELIFE
IF0
err2019-05-23
err38
errOAAI
errKoneru, Pratibha C.; Francis, Ashwanth C.; Deng, Nanjie; Rebensburg, Stephanie V.; Hoyte, Ashley C.; Lindenberger, Jared; Adu-Ampratwum, Daniel; Larue, Ross C.; Wempe, Michael F.; Engelman, Alan N.; Lyumkis, Dmitry; Fuchs, James R.; Levy, Ronald M.; Melikyan, Gregory B.; Kvaratskhelia, Mamuka
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Research Directions

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Co-authors
Cooperation Journals
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Ian A. Wilson
H-index: 179 · Papers: 1.7K
T
Tony Hunter
H-index: 173 · Papers: 652
M
Martin Karplus
H-index: 167 · Papers: 981
C
Christopher M. Dobson
H-index: 162 · Papers: 1.1K
J
J. Andrew McCammon
H-index: 134 · Papers: 1.1K
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