Lindsay V. Clark - Publications, H-index & Citations

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Lindsay V. Clark

research scientific computing

21H-index

102Paper Count

2.0KCitation Count

Published Papers 40

Publication Date

Optimizing resource allocation in Miscanthus breeding via sparse testing designs for genomic prediction

Frontiers in Plant Science

IF4.8

2026-08-14

OAAI

SP Shatabdi Proma; NL Nelson Lubanga; ES Erik Sacks; AD Andrew D. B. Leakey; HZ Hua Zhao; BK Bimal Kumar Ghimire; AE Alexander E. Lipka; JN Joyce N. Njuguna; CY Chang Yeon Yu; ES Eun Soo Seong; JH Ji Hye Yoo; HN Hironori Nagano; KG Kossonou G. Anzoua; TY Toshihiko Yamada; PC Pavel Chebukin; XJ Xiaoli Jin; LV Lindsay V. Clark; KK Karen Koefoed Petersen; JP Junhua Peng; AS Andrey Sabitov; ED Elena Dzyubenko; ND Nicolay Dzyubenko; KG Katarzyna Glowacka; MN Moyses Nascimento; AC Ana Carolina Campana Nascimento; MS Maria S. Dwiyanti; LB Larisa Bagment; AS Ansari Shaik; JG Julian Garcia-Abadillo; DJ Diego Jarquin

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Multi-trait multi-environment genomic prediction strategies for Miscanthus sacchariflorus

Frontiers in Plant Science

IF4.8

2026-07-25

OAAI

SP Shatabdi Proma; GJ Garcia-Abadillo Julian; VS Vitor Sagae; ES Erik Sacks; AD Andrew D.B. Leakey; HZ Hua Zhao; BK Bimal Kumar Ghimire; AE Alexander E. Lipka; JN Joyce N. Njuguna; CY Chang Yeon Yu; ES Eun Soo Seong; JH Ji Hye Yoo; HN Hironori Nagano; KG Kossonou G. Anzoua; TY Toshihiko Yamada; PC Pavel Chebukin; XJ Xiaoli Jin; LV Lindsay V. Clark; KK Karen Koefoed Petersen; JP Junhua Peng; AS Andrey Sabitov; ED Elena Dzyubenko; ND Nicolay Dzyubenko; KG Katarzyna Glowacka; MN Moyses Nascimento; AC Ana Carolina Campana Nascimento; MS Maria S. Dwiyanti; LB Larisa Bagment; AS Ansari Shaik; DJ Diego Jarquin

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PE/PPE proteins contribute to Mycobacterium tuberculosis drug resistance

Nature Communications

IF15.7

2026-04-24

OAAI

Vishant Boradia; Junxi Chen; Andrew Frando; Lindsay V. Clark; Christoph Grundner

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In Vivo Circadian Gene Expression in Pediatric Asthma

SLEEP

IF4.9

2025-05-19

PREAI

Powell, Weston; Clark, Lindsay; Debley, Jason

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Differential Epithelial Gene Expression After Viral Infection in Airway Epithelial Cells in Pediatric OSA

SLEEP

IF4.9

2025-05-19

PREAI

Kang, Maria; Ohm, Madison; Daluz, Carolina; Clark, Lindsay; White, Maria; Vanderwall, Elizabeth; Gates, Camille; Debley, Jason; Powell, Weston

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Dominant foliar endophytes influence soybean yield and transcriptome

FEMS MICROBIOLOGY ECOLOGY

IF3.2

2025-05-13

OAAI

Marquez, Ivan Sosa; Griesbaum, Karla; Clark, Lindsay, V; Ainsworth, Elizabeth A.; Christian, Natalie; Heath, Katy D.

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Examining parent-of-origin effects on transcription and RNA methylation in mediating aggressive behavior in honey bees (Apis mellifera) (vol 24, 315, 2023)

BMC GENOMICS

IF3.7

2024-12-20

OAAI

Bresnahan, Sean T.; Lee, Ellen; Clark, Lindsay; Ma, Rong; Markey, Michael; Rangel, Juliana; Grozinger, Christina M.; Li-Byarlay, Hongmei

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Improving precision and accuracy of genetic mapping with genotyping-by-sequencing data in outcrossing species

GLOBAL CHANGE BIOLOGY BIOENERGY

IF4.1

2024-06-05

PREAI

LaBonte, Nicholas R.; Zerpa-Catanho, Dessiree P.; Liu, Siyao; Xiao, Liang; Dong, Hongxu; Clark, Lindsay V.; Sacks, Erik J.

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CIRCADIAN CYCLIC GENE EXPRESSION IN HUMAN AIRWAY EPITHELIAL CELLS IN ASTHMA AND VIRAL INFECTIONS

SLEEP

IF4.9

2024-04-20

PREAI

Powell, Weston; Clark, Lindsay; White, Maria; Rich, Lucille; Gates, Camille; Vanderwall, Elizabeth; Debley, Jason

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Identification of diagnostic KASP-SNP markers for routine breeding activities in yam (Dioscorea spp.)

PLANT GENOME

IF3.8

2023-12-13

OAAI

Agre, Paterne A.; Clark, Lindsay V.; Garcia-Oliveira, Ana Luisa; Bohar, Rajaguru; Adebola, Patrick; Asiedu, Robert; Terauchi, Ryohei; Asfaw, Asrat

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Genotype by environment model predictive ability in Miscanthus

GLOBAL CHANGE BIOLOGY BIOENERGY

IF4.1

2023-12-11

OAAI

Widener, Sarah; Njuguna, Joyce N.; Clark, Lindsay V.; Anzoua, Kossonou G.; Bagmet, Larisa; Chebukin, Pavel; Dwiyanti, Maria S.; Dzyubenko, Elena; Dzyubenko, Nicolay; Ghimire, Bimal Kumar; Jin, Xiaoli; Jorgensen, Uffe; Kjeldsen, Jens Bonderup; Nagano, Hironori; Peng, Junhua; Petersen, Karen Koefoed; Sabitov, Andrey; Seong, Eun Soo; Yamada, Toshihiko; Yoo, Ji Hye; Yu, Chang Yeon; Zhao, Hua; Jarquin, Diego; Sacks, Erik; Lipka, Alexander E.

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Solving the mystery of Obake rice in Africa: population structure analyses of Oryza longistaminata reveal three genetic groups and evidence of both recent and ancient introgression with O. sativa

FRONTIERS IN PLANT SCIENCE

IF4.8

2023-11-15

OAAI

Labroo, Marlee R.; Clark, Lindsay V.; Zhang, Shilai; Hu, Fengyi; Tao, Dayun; Hamilton, Ruaraidh Sackville; Sacks, Erik J.

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Cryopreservation Alters Tissue Structure and Improves Differentiation of Engineered Skeletal Muscle

TISSUE ENGINEERING PART A

IF2.9

2023-11-01

PREAI

Gapinske, Lauren; Clark, Lindsay; Caro-Rivera, Lourdes Marinna; Bashir, Rashid

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Impact of genotype-calling methodologies on genome-wide association and genomic prediction in polyploids

PLANT GENOME

IF3.8

2023-10-30

OAAI

Njuguna, Joyce N.; Clark, Lindsay V.; Lipka, Alexander E.; Anzoua, Kossonou G.; Bagmet, Larisa; Chebukin, Pavel; Dwiyanti, Maria S.; Dzyubenko, Elena; Dzyubenko, Nicolay; Ghimire, Bimal Kumar; Jin, Xiaoli; Johnson, Douglas A.; Kjeldsen, Jens Bonderup; Nagano, Hironori; Oliveira, Ivone de Bem; Peng, Junhua; Petersen, Karen Koefoed; Sabitov, Andrey; Seong, Eun Soo; Yamada, Toshihiko; Yoo, Ji Hye; Yu, Chang Yeon; Zhao, Hua; Munoz, Patricio; Long, Stephen P.; Sacks, Erik J.

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Host genetic variation drives the differentiation in the ecological role of the native Miscanthus root-associated microbiome

MICROBIOME

IF12.7

2023-09-30

OAAI

Ji, Niuniu; Liang, Di; Clark, Lindsay, V; Sacks, Erik J.; Kent, Angela D.

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Genome-wide association and genomic prediction for yield and component traits of Miscanthus sacchariflorus

GLOBAL CHANGE BIOLOGY BIOENERGY

IF4.1

2023-09-08

OAAI

Njuguna, Joyce N.; Clark, Lindsay V.; Lipka, Alexander E.; Anzoua, Kossonou G.; Bagmet, Larisa; Chebukin, Pavel; Dwiyanti, Maria S.; Dzyubenko, Elena; Dzyubenko, Nicolay; Ghimire, Bimal Kumar; Jin, Xiaoli; Johnson, Douglas A.; Nagano, Hironori; Peng, Junhua; Petersen, Karen Koefoed; Sabitov, Andrey; Seong, Eun Soo; Yamada, Toshihiko; Yoo, Ji Hye; Yu, Chang Yeon; Zhao, Hua; Long, Stephen P.; Sacks, Erik J.

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Examining parent-of-origin effects on transcription and RNA methylation in mediating aggressive behavior in honey bees (Apis mellifera)

BMC GENOMICS

IF3.7

2023-06-12

OAAI

Bresnahan, Sean T.; Lee, Ellen; Clark, Lindsay; Ma, Rong; Rangel, Juliana; Grozinger, Christina M.; Li-Byarlay, Hongmei

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Genome-wide association analysis for emergence of deeply sown rice (Oryza sativa) reveals novel aus-specific phytohormone candidate genes for adaptation to dry-direct seeding in the field

FRONTIERS IN PLANT SCIENCE

IF4.8

2023-06-12

OAAI

Sakhale, Sandeep A.; Yadav, Shailesh; Clark, Lindsay V.; Lipka, Alexander E.; Kumar, Arvind; Sacks, Erik J.

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Single Cell Transcriptomics of Myeloid Cells in Black Americans with Multiple Sclerosis

NEUROLOGY

IF8.5

2023-04-25

PREAI

Bingen, Jeremy; Clark, Lindsay; Wright, Chris; Xu, Fangxiu; Carrithers, Michael

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Biomass yield in a genetically diverse Miscanthus sacchariflorus germplasm panel phenotyped at five locations in Asia, North America, and Europe

GLOBAL CHANGE BIOLOGY BIOENERGY

IF4.1

2023-03-07

OAAI

Njuguna, Joyce N. N.; Clark, Lindsay V. V.; Anzoua, Kossonou G. G.; Bagmet, Larisa; Chebukin, Pavel; Dwiyanti, Maria S. S.; Dzyubenko, Elena; Dzyubenko, Nicolay; Ghimire, Bimal Kumar; Jin, Xiaoli; Johnson, Douglas A. A.; Jorgensen, Uffe; Kjeldsen, Jens Bonderup; Nagano, Hironori; Peng, Junhua; Petersen, Karen Koefoed; Sabitov, Andrey; Seong, Eun Soo; Yamada, Toshihiko; Yoo, Ji Hye; Yu, Chang Yeon; Zhao, Hua; Long, Stephen P. P.; Sacks, Erik J. J.

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Research Directions