Not logged inxcms in Peak Form: Now Anchoring a Complete Metabolomics Data Preprocessing and Analysis Software Ecosystem
Louail, Philippine; Brunius, Carl; Garcia-Aloy, Mar; Kumler, William; Storz, Norman; Stanstrup, Jan; Treutler, Hendrik; Vangeenderhuysen, Pablo; Witting, Michael; Neumann, Steffen; Rainer, Johannes
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SaveMassBank: an open and FAIR mass spectral data resource
Neumann, Steffen; Meier, Rene; Wenk, Michael; Elapavalore, Anjana; Nishioka, Takaaki; Schulze, Tobias; Stravs, Michael; Tsugawa, Hiroshi; Matsuda, Fumio; Schymanski, Emma L.
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SaveThe Proteomics Standards Initiative Standardized Formats for Spectral Libraries and Fragment Ion Peak Annotations: mzSpecLib and mzPAF
Klein, Joshua; Lam, Henry; Mak, Tytus D.; Bittremieux, Wout; Perez-Riverol, Yasset; Gabriels, Ralf; Shofstahl, Jim; Hecht, Helge; Binz, Pierre-Alain; Kawano, Shin; Van Den Bossche, Tim; Carver, Jeremy; Neely, Benjamin A.; Mendoza, Luis; Suomi, Tomi; Claeys, Tine; Payne, Thomas; Schulte, Douwe; Sun, Zhi; Hoffmann, Nils; Zhu, Yunping; Neumann, Steffen; Jones, Andrew R.; Bandeira, Nuno; Vizcaino, Juan Antonio; Deutsch, Eric W.
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SaveLeaf metabolic traits reveal hidden dimensions of plant form and function
Walker, Tom W. N.; Schrodt, Franziska; Allard, Pierre-Marie; Defossez, Emmanuel; Jassey, Vincent E. J.; Schuman, Meredith C.; Alexander, Jake M.; Baines, Oliver; Baldy, Virginie; Bardgett, Richard D.; Capdevila, Pol; Coley, Phyllis D.; van Dam, Nicole M.; David, Bruno; Descombes, Patrice; Endara, Maria-Jose; Fernandez, Catherine; Forrister, Dale; Gargallo-Garriga, Albert; Glauser, Gaetan; Marr, Sue; Neumann, Steffen; Pellissier, Loic; Peters, Kristian; Rasmann, Sergio; Roessner, Ute; Salguero-Gomez, Roberto; Sardans, Jordi; Weckwerth, Wolfram; Wolfender, Jean-Luc; Penuelas, Josep
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SaveProteomics Standards Initiative at Twenty Years: Current Activities and Future Work
Deutsch, Eric W.; Vizcaino, Juan Antonio; Jones, Andrew R.; Binz, Pierre-Alain; Lam, Henry; Klein, Joshua; Bittremieux, Wout; Perez-Riverol, Yasset; Tabb, David L.; Walzer, Mathias; Ricard-Blum, Sylvie; Hermjakob, Henning; Neumann, Steffen; Mak, Tytus D.; Kawano, Shin; Mendoza, Luis; Van Den Bossche, Tim; Gabriels, Ralf; Bandeira, Nuno; Carver, Jeremy; Pullman, Benjamin; Sun, Zhi; Hoffmann, Nils; Shofstahl, Jim; Zhu, Yunping; Licata, Luana; Quaglia, Federica; Tosatto, Silvio C. E.; Orchard, Sandra E.
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SaveThe community ecology perspective of omics data COMMENT
Jurburg, Stephanie D.; Buscot, Francois; Chatzinotas, Antonis; Chaudhari, Narendrakumar M.; Clark, Adam T.; Garbowski, Magda; Grenie, Matthias; Hom, Erik F. Y.; Karakoc, Canan; Marr, Susanne; Neumann, Steffen; Tarkka, Mika; van Dam, Nicole M.; Weinhold, Alexander; Heintz-Buschart, Anna
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SaveNetworks and Graphs Discovery in Metabolomics Data Analysis and Interpretation
Amara, Adam; Frainay, Clement; Jourdan, Fabien; Naake, Thomas; Neumann, Steffen; Novoa-del-Toro, Elva Maria; Salek, Reza M.; Salzer, Liesa; Scharfenberg, Sarah; Witting, Michael
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SaveA Modular and Expandable Ecosystem for Metabolomics Data Annotation in R
Rainer, Johannes; Vicini, Andrea; Salzer, Liesa; Stanstrup, Jan; Badia, Josep M.; Neumann, Steffen; Stravs, Michael A.; Hernandes, Vinicius Verri; Gatto, Laurent; Gibb, Sebastian; Witting, Michael
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SaveFunctional Traits 2.0: The power of the metabolome for ecology
Walker, Tom W. N.; Alexander, Jake M.; Allard, Pierre-Marie; Baines, Oliver; Baldy, Virginie; Bardgett, Richard D.; Capdevila, Pol; Coley, Phyllis D.; David, Bruno; Defossez, Emmanuel; Endara, Maria-Jose; Ernst, Madeleine; Fernandez, Catherine; Forrister, Dale; Gargallo-Garriga, Albert; Jassey, Vincent E. J.; Marr, Sue; Neumann, Steffen; Pellissier, Loic; Penuelas, Josep; Peters, Kristian; Rasmann, Sergio; Roessner, Ute; Sardans, Jordi; Schrodt, Franziska; Schuman, Meredith C.; Soule, Abrianna; Uthe, Henriette; Weckwerth, Wolfram; Wolfender, Jean-Luc; van Dam, Nicole M.; Salguero-Gomez, Roberto
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SaveThe significance of tree-tree interactions for forest ecosystem functioning
Trogisch, Stefan; Liu, Xiaojuan; Rutten, Gemma; Xue, Kai; Bauhus, Juergen; Brose, Ulrich; Bu, Wensheng; Cesarz, Simone; Chesters, Douglas; Connolly, John; Cui, Xiaoyong; Eisenhauer, Nico; Guo, Liangdong; Haider, Sylvia; Haerdtle, Werner; Kunz, Matthias; Liu, Lingli; Ma, Zeqing; Neumann, Steffen; Sang, Weiguo; Schuldt, Andreas; Tang, Zhiyao; van Dam, Nicole M.; von Oheimb, Goddert; Wang, Ming-Qiang; Wang, Shaopeng; Weinhold, Alexander; Wirth, Christian; Wubet, Tesfaye; Xu, Xingliang; Yang, Bo; Zhang, Naili; Zhu, Chao-Dong; Ma, Keping; Wang, Yanfen; Bruelheide, Helge
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SaveMass spectrometry-based metabolomics: a guide for annotation, quantification and best reporting practices
Alseekh, Saleh; Aharoni, Asaph; Brotman, Yariv; Contrepois, Kevin; D'Auria, John; Ewald, Jan; Ewald, Jennifer C.; Fraser, Paul D.; Giavalisco, Patrick; Hall, Robert D.; Heinemann, Matthias; Link, Hannes; Luo, Jie; Neumann, Steffen; Nielsen, Jens; de Souza, Leonardo Perez; Saito, Kazuki; Sauer, Uwe; Schroeder, Frank C.; Schuster, Stefan; Siuzdak, Gary; Skirycz, Aleksandra; Sumner, Lloyd W.; Snyder, Michael P.; Tang, Huiru; Tohge, Takayuki; Wang, Yulan; Wen, Weiwei; Wu, Si; Xu, Guowang; Zamboni, Nicola; Fernie, Alisdair R.
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SaveReshaping of the Arabidopsis thaliana Proteome Landscape and Co-regulation of Proteins in Development and Immunity
Bassal, Mona; Abukhalaf, Mohammad; Majovsky, Petra; Thieme, Domenika; Herr, Tobias; Ayash, Mohamed; Tabassum, Naheed; Al Shweiki, M. H. D. Rami; Proksch, Carsten; Hmedat, Ali; Ziegler, Joerg; Lee, Justin; Neumann, Steffen; Hoehenwarter, Wolfgang
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SaveFeature-based molecular networking in the GNPS analysis environment
Nothias, Louis-Felix; Petras, Daniel; Schmid, Robin; Duehrkop, Kai; Rainer, Johannes; Sarvepalli, Abinesh; Protsyuk, Ivan; Ernst, Madeleine; Tsugawa, Hiroshi; Fleischauer, Markus; Aicheler, Fabian; Aksenov, Alexander A.; Alka, Oliver; Allard, Pierre-Marie; Barsch, Aiko; Cachet, Xavier; Caraballo-Rodriguez, Andres Mauricio; Da Silva, Ricardo R.; Dang, Tam; Garg, Neha; Gauglitz, Julia M.; Gurevich, Alexey; Isaac, Giorgis; Jarmusch, Alan K.; Kamenik, Zdenek; Kang, Kyo Bin; Kessler, Nikolas; Koester, Irina; Korf, Ansgar; Le Gouellec, Audrey; Ludwig, Marcus; Martin H., Christian; McCall, Laura-Isobel; McSayles, Jonathan; Meyer, Sven W.; Mohimani, Hosein; Morsy, Mustafa; Moyne, Oriane; Neumann, Steffen; Neuweger, Heiko; Nguyen, Ngoc Hung; Nothias-Esposito, Melissa; Paolini, Julien; Phelan, Vanessa V.; Pluskal, Tomas; Quinn, Robert A.; Rogers, Simon; Shrestha, Bindesh; Tripathi, Anupriya; van der Hooft, Justin J. J.; Vargas, Fernando; Weldon, Kelly C.; Witting, Michael; Yang, Heejung; Zhang, Zheng; Zubeil, Florian; Kohlbacher, Oliver; Boecker, Sebastian; Alexandrov, Theodore; Bandeira, Nuno; Wang, Mingxun; Dorrestein, Pieter C.
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