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Filip Miljković

Department of Pharmaceutical Biosciences

17H-index
79Paper Count
1.2KCitation Count
Published Papers 33
Publication Date
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CRUSH—Cleavage Rules Using SMIRKS Heuristics: an enhanced molecular fragmentation algorithm
errJournal of Cheminformatics
IF5.7
err2026-06-13
err0
errOAAI
errEdgar López-López; José L. Medina-Franco; Filip Miljković
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Author Correction: Mask-prior-guided denoising diffusion improves inverse protein folding
errNature Machine Intelligence
IF23.9
err2026-02-24
err0
errOAAI
errPeizhen Bai; Filip Miljković; Xianyuan Liu; Leonardo De Maria; Rebecca Croasdale-Wood; Owen Rackham; Haiping Lu
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Metabolite Identification Data in Drug Discovery; Part 2: Site-of-Metabolism Annotation; Analysis; and Exploration for Machine Learning
errMolecular Pharmaceutics
IF4.5
err2025-10-21
err0
errOAAI
errYa Chen; Susanne Winiwarter; Roxane Axel Jacob; Marie Ahlqvist; Angelica Mazzolari; Filip Miljković; Johannes Kirchmair
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Metabolite Identification Data in Drug Discovery; Part 1: Data Generation and Trend Analysis
errMolecular Pharmaceutics
IF4.5
err2025-10-14
err0
errOAAI
errMarie Ahlqvist; Isabella Bonner Karlsson; Anja Ekdahl; Cecilia Ericsson; Ulrik Jurva; Filip Miljković; Ya Chen; Susanne Winiwarter
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LAGOM: A transformer-based chemical language model for drug metabolite prediction
errARTIFICIAL INTELLIGENCE IN THE LIFE SCIENCES
IF5.4
err2025-09-01
err0
errOAAI
errLarsson, Sofia; Carlsson, Miranda; Beckmann, Richard; Miljkovic, Filip; Mercado, Rocio
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Development of novel high-throughput biochemical competition assays to identify ligands of human asialoglycoprotein receptor 1
errSLAS Discovery
IF2.7
err2025-08-21
err0
errOAAI
errJianming Liu; Bradley Peter; Lauren Rhodes; Mats Ormö; Bo Peng; Pia Hansson; Anders Gunnarsson; Laurent Knerr; Filip Miljković; Maria Ölwegård-Halvarsson; Mahya Dezfouli; Niek Dekker; Helena Lindmark; Shalini Andersson
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Correction to “Closing the Design–Make–Test–Analyze Loop: Interplay between Experiments and Predictions Drives PROTACs Bioavailability”
errJournal of Medicinal Chemistry
IF6.8
err2025-07-16
err0
PREAI
errZulma Santisteban Valencia; Jennifer Kingston; Filip Miljković; Hannah Rowbottom; Nadia Mann; Sophie Davies; Martin Ekblad; Silvio Di Castro; Karolina Kwapień; Erik Malmerberg; Stig D. Friis; Thomas Lundbäck; Tomas Leek; Johan Wernevik
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Mask-prior-guided denoising diffusion improves inverse protein folding
errNature Machine Intelligence
IF23.9
err2025-06-16
err0
errOAAI
errPeizhen Bai; Filip Miljković; Xianyuan Liu; Leonardo De Maria; Rebecca Croasdale-Wood; Owen Rackham; Haiping Lu
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errSave
Closing the Design-Make-Test-Analyze Loop: Interplay between Experiments and Predictions Drives PROTACs Bioavailability
errJOURNAL OF MEDICINAL CHEMISTRY
IF6.8
err2024-11-08
err0
PREAI
errValencia, Zulma Santisteban; Kingston, Jennifer; Miljkovic, Filip; Rowbottom, Hannah; Mann, Nadia; Davies, Sophie; Ekblad, Martin; Di Castro, Silvio; Kwapien, Karolina; Malmerberg, Erik; Friis, Stig D.; Lundback, Thomas; Leek, Tomas; Wernevik, Johan
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Active Learning Approach for Guiding Site-of-Metabolism Measurement and Annotation
errJOURNAL OF CHEMICAL INFORMATION AND MODELING
IF5.3
err2024-01-03
err2
errOAAI
errChen, Ya; Seidel, Thomas; Jacob, Roxane Axel; Hirte, Steffen; Mazzolari, Angelica; Pedretti, Alessandro; Vistoli, Giulio; Langer, Thierry; Miljkovic, Filip; Kirchmair, Johannes
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Data-Driven Global Assessment of Protein Kinase Inhibitors with Emphasis on Covalent Compounds
errJOURNAL OF MEDICINAL CHEMISTRY
IF6.8
err2023-05-22
err9
PREAI
errXerxa, Elena; Miljkovic, Filip; Bajorath, Juergen
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Interpretable bilinear attention network with domain adaptation improves drug-target prediction
errNATURE MACHINE INTELLIGENCE
IF23.9
err2023-02-02
err81
PREAI
errBai, Peizhen; Miljkovic, Filip; John, Bino; Lu, Haiping
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Evaluating the performance of machine-learning regression models for pharmacokinetic drug-drug interactions
errCPT-PHARMACOMETRICS & SYSTEMS PHARMACOLOGY
IF3
err2022-11-17
err6
errOAAI
errGill, Jaidip; Moullet, Marie; Martinsson, Anton; Miljkovic, Filip; Williamson, Beth; Arends, Rosalinda H.; Pilla Reddy, Venkatesh
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Comparing the applications of machine learning, PBPK, and population pharmacokinetic models in pharmacokinetic drug-drug interaction prediction
errCPT-PHARMACOMETRICS & SYSTEMS PHARMACOLOGY
IF3
err2022-10-12
err14
errOAAI
errGill, Jaidip; Moullet, Marie; Martinsson, Anton; Miljkovic, Filip; Williamson, Beth; Arends, Rosalinda H.; Reddy, Venkatesh Pilla
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Machine Learning in Chemoinformatics and Medicinal Chemistry
errANNUAL REVIEW OF BIOMEDICAL DATA SCIENCE
IF6
err2022-08-10
err19
PREAI
errRodriguez-Perez, Raquel; Miljkovic, Filip; Bajorath, Juergen
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Cell Morphological Profiling Enables High-Throughput Screening for PROteolysis TArgeting Chimera (PROTAC) Phenotypic Signature
errACS CHEMICAL BIOLOGY
IF3.8
err2022-07-06
err26
errOAAI
errTrapotsi, Maria-Anna; Mouchet, Elizabeth; Williams, Guy; Monteverde, Tiziana; Juhani, Karolina; Turkki, Riku; Miljkovic, Filip; Martinsson, Anton; Mervin, Lewis; Pryde, Kenneth R.; Mullers, Erik; Barrett, Ian; Engkvist, Ola; Bender, Andreas; Moreau, Kevin
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Multi-task convolutional neural networks for predicting in vitro clearance endpoints from molecular images
errJOURNAL OF COMPUTER-AIDED MOLECULAR DESIGN
IF3.1
err2022-05-27
err7
PREAI
errMora, Andres Martinez; Subramanian, Vigneshwari; Miljkovic, Filip
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Approach for the Design of Covalent Protein Kinase Inhibitors via Focused Deep Generative Modeling
errMOLECULES
IF4.6
err2022-01-17
err11
errOAAI
errYoshimori, Atsushi; Miljkovic, Filip; Bajorath, Juergen
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Impact of Artificial Intelligence on Compound Discovery, Design, and Synthesis
errACS OMEGA
IF4.3
err2021-11-29
err24
errOAAI
errMiljkovic, Filip; Rodriguez-Perez, Raquel; Bajorath, Juergen
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Systematic comparison of competitive and allosteric kinase inhibitors reveals common structural characteristics
errEUROPEAN JOURNAL OF MEDICINAL CHEMISTRY
IF5.9
err2021-03-01
err11
PREAI
errHu, Huabin; Laufkoetter, Oliver; Miljkovic, Filip; Bajorath, Juergen
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Research Directions

No research directions
Co-authors
Cooperation Journals
J
Jürgen Bajorath
H-index: 76 · Papers: 1.1K
G
Guy Williams
H-index: 73 · Papers: 311
S
Stefan Laufer
H-index: 70 · Papers: 820
A
Andreas Bender
H-index: 70 · Papers: 541
T
Thierry Langer
H-index: 62 · Papers: 484
View more