Not logged in Temporal reconstruction of a Salmonella enteritidis ST11 outbreak in New Zealand (vol 11, 001525, 2025) Strydom, Hugo; Wright, Jackie; Bromhead, Collette; Welch, David; Williams, Ernest; Mulqueen, Kerry; de Ligt, Joep; Biggs, Patrick J.; Paine, Shevaun; Jefferies, Sarah; French, Nigel Share Save
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Temporal reconstruction of a Salmonella Enteritidis ST11 outbreak in New Zealand Strydom, Hugo; Wright, Jackie; Bromhead, Collette; Welch, David; Williams, Ernest; Mulqueen, Kerry; de Ligt, Joep; Biggs, Patrick J.; Paine, Shevaun; Jefferies, Sarah; French, Nigel Share Save
Building pangenome graphs Garrison, Erik; Guarracino, Andrea; Heumos, Simon; Villani, Flavia; Bao, Zhigui; Tattini, Lorenzo; Hagmann, Joerg; Vorbrugg, Sebastian; Marco-Sola, Santiago; Kubica, Christian; Ashbrook, David G.; Thorell, Kaisa; Rusholme-Pilcher, Rachel L.; Liti, Gianni; Rudbeck, Emilio; Golicz, Agnieszka A.; Nahnsen, Sven; Yang, Zuyu; Mwaniki, Moses Njagi; Nobrega, Franklin L.; Wu, Yi; Chen, Hao; de Ligt, Joep; Sudmant, Peter H.; Huang, Sanwen; Weigel, Detlef; Soranzo, Nicole; Colonna, Vincenza; Williams, Robert W.; Prins, Pjotr Share Save
Impact of the COVID-19 related border restrictions on influenza and other common respiratory viral infections in New Zealand Huang, Q. Sue; Turner, Nikki; Wood, Tim; Anglemyer, Andrew; McIntyre, Peter; Aminisani, Nayyereh; Dowell, Tony; Trenholme, Adrian; Byrnes, Cass; Balm, Michelle; McIntosh, Christine; Jefferies, Sarah; Grant, Cameron C.; Nesdale, Annette; Dobinson, Hazel C.; Campbell-Stokes, Priscilla; Daniells, Karen; Geoghegan, Jemma; de Ligt, Joep; Jelley, Lauren; Seeds, Ruth; Jennings, Tineke; Rensburg, Megan; Cueto, Jort; Caballero, Ernest; John, Joshma; Penghulan, Emmanuel; Tan, Chor Ee; Ren, Xiaoyun; Berquist, Klarysse; O'Neill, Meaghan; Marull, Maritza; Yu, Chang; McNeill, Andrea; Kiedrzynski, Tomasz; Roberts, Sally; McArthur, Colin; Stanley, Alicia; Taylor, Susan; Wong, Conroy; Lawrence, Shirley; Baker, Michael G.; Kvalsvig, Amanda; van der Werff, Koen; Mcauliffe, Gary; Antoszewska, Hanna; Dilcher, Meik; Fahey, Jennifer; Werno, Anja; Elvy, Juliet; Grant, Jenny; Addidle, Michael; Zacchi, Nicolas; Mansell, Chris; Widdowson, Marc-Alain; Thomas, Paul G.; Webby, Richard J. Share Save
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Tracing the international arrivals of SARS-CoV-2 Omicron variants after Aotearoa New Zealand reopened its border Douglas, Jordan; Winter, David; McNeill, Andrea; Carr, Sam; Bunce, Michael; French, Nigel; Hadfield, James; de Ligt, Joep; Welch, David; Geoghegan, Jemma L. Share Save
Genomic epidemiology of Delta SARS-CoV-2 during transition from elimination to suppression in Aotearoa New Zealand Jelley, Lauren; Douglas, Jordan; Ren, Xiaoyun; Winter, David; McNeill, Andrea; Huang, Sue; French, Nigel; Welch, David; Hadfield, James; de Ligt, Joep; Geoghegan, Jemma L. Share Save
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COVID-19 vaccine strategies for Aotearoa New Zealand: a mathematical modelling study Nguyen, Trung; Adnan, Mehnaz; Nguyen, Binh P.; de Ligt, Joep; Geoghegan, Jemma L.; Dean, Richard; Jefferies, Sarah; Baker, Michael G.; Seah, Winston Kg; Sporle, Andrew A.; French, Nigel Peter; Murdoch, David R.; Welch, David; Simpson, Colin R. Share Save
Real-Time Genomics for Tracking Severe Acute Respiratory Syndrome Coronavirus 2 Border Incursions after Virus Elimination, New Zealand Douglas, Jordan; Geoghegan, Jemma L.; Hadfield, James; Bouckaert, Remco; Storey, Matthew; Ren, Xiaoyun; de Ligt, Joep; French, Nigel; Welch, David Share Save
Phylodynamics reveals the role of human travel and contact tracing in controlling the first wave of COVID-19 in four island nations Douglas, Jordan; Mendes, Fabio K.; Bouckaert, Remco; Xie, Dong; Jimenez-Silva, Cinthy L.; Swanepoel, Christiaan; de Ligt, Joep; Ren, Xiaoyun; Storey, Matt; Hadfield, James; Simpson, Colin R.; Geoghegan, Jemma L.; Drummond, Alexei J.; Welch, David Share Save
Use of Genomics to Track Coronavirus Disease Outbreaks, New Zealand Geoghegan, Jemma L.; Douglas, Jordan; Ren, Xiaoyun; Storey, Matthew; Hadfield, James; Silander, Olin K.; Freed, Nikki E.; Jelley, Lauren; Jefferies, Sarah; Sherwood, Jillian; Paine, Shevaun; Huang, Sue; Sporle, Andrew; Baker, Michael G.; Murdoch, David R.; Drummond, Alexei J.; Welch, David; Simpson, Colin R.; French, Nigel; Holmes, Edward C.; de Ligt, Joep Share Save
Transmission of Severe Acute Respiratory Syndrome Coronavirus 2 during Border Quarantine and Air Travel, New Zealand (Aotearoa) Eichler, Nick; Thomley, Craig; Swadi, Tara; Devine, Tom; McElnay, Caroline; Sherwood, Jillian; Brunton, Cheryl; Williamson, Felicity; Freeman, Josh; Berger, Sarah; Ren, Xiaoyun; Storey, Matt; de Ligt, Joep; Geoghegan, Jemma L. Share Save
Genomic Evidence of In-Flight Transmission of SARS-CoV-2 Despite Predeparture Testing Swadi, Tara; Geoghegan, Jemma L.; Devine, Tom; McElnay, Caroline; Sherwood, Jillian; Shoemack, Phil; Ren, Xiaoyun; Storey, Matt; Jefferies, Sarah; Smit, Erasmus; Hadfield, James; Kenny, Aoife; Jelley, Lauren; Sporle, Andrew; McNeill, Andrea; Reynolds, G. Edwin; Mouldey, Kip; Lowe, Lindsay; Sonder, Gerard; Drummond, Alexei J.; Huang, Sue; Welch, David; Holmes, Edward C.; French, Nigel; Simpson, Colin R.; de Ligt, Joep Share Save
Genomic epidemiology reveals transmission patterns and dynamics of SARS-CoV-2 in Aotearoa New Zealand Geoghegan, Jemma L.; Ren, Xiaoyun; Storey, Matthew; Hadfield, James; Jelley, Lauren; Jefferies, Sarah; Sherwood, Jill; Paine, Shevaun; Huang, Sue; Douglas, Jordan; Mendes, Fabio K.; Sporle, Andrew; Baker, Michael G.; Murdoch, David R.; French, Nigel; Simpson, Colin R.; Welch, David; Drummond, Alexei J.; Holmes, Edward C.; Duchene, Sebastian; de Ligt, Joep Share Save
An emergent clade of SARS-CoV-2 linked to returned travellers from Iran Eden, John-Sebastian; Rockett, Rebecca; Carter, Ian; Rahman, Hossinur; de Ligt, Joep; Hadfield, James; Storey, Matthew; Ren, Xiaoyun; Tulloch, Rachel; Basile, Kerri; Wells, Jessica; Byun, Roy; Gilroy, Nicky; O'Sullivan, Matthew, V; Sintchenko, Vitali; Chen, Sharon C.; Maddocks, Susan; Sorrell, Tania C.; Holmes, Edward C.; Dwyer, Dominic E.; Kok, Jen Share Save
The molecular genetic make-up of male breast cancer Moelans, Cathy B.; de Ligt, Joep; van der Groep, Petra; Prins, Pjotr; Besselink, Nicolle J. M.; Hoogstraat, Marlous; ter Hoeve, Natalie D.; Lacle, Miangela M.; Kornegoor, Robert; van der Pol, Carmen C.; de Leng, Wendy W. J.; Barbe, Ellis; van der Vegt, Bert; Martens, John; Bult, Peter; Smit, Vincent T. H. B. M.; Koudijs, Marco J.; Nijman, Isaac J.; Voest, Emile E.; Selenica, Pier; Weigelt, Britta; Reis-Filho, Jorge S.; van der Wall, Elsken; Cuppen, Edwin; van Diest, Paul J. Share Save
Deficiency of nucleotide excision repair is associated with mutational signature observed in cancer Jager, Myrthe; Blokzijl, Francis; Kuijk, Ewart; Bertl, Johanna; Vougioukalaki, Maria; Janssen, Roel; Besselink, Nicolle; Boymans, Sander; de Ligt, Joep; Pedersen, Jakob Skou; Hoeijmakers, Jan; Pothof, Joris; van Boxtel, Ruben; Cuppen, Edwin Share Save
Natural helix 9 mutants of PPARγ differently affect its transcriptional activity Broekema, Marjoleine F.; Massink, Maarten P. G.; Donato, Cinzia; de Ligt, Joep; Schaarschmidt, Joerg; Borgman, Anouska; Schooneman, Marieke G.; Melchers, Diana; Gerding, Martin N.; Houtman, Rene; Bonvin, Alexandre M. J. J.; Majithia, Amit R.; Monajemi, Houshang; van Haaften, Gijs W.; Soeters, Maarten R.; Kalkhoven, Eric Share Save
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