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T

Todd J. Treangen

rice university

40H-index
210Paper Count
2.9WCitation Count
Published Papers 64
Publication Date
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A Comparison of Methods for the Optimal Recovery of the Human Fecal Virome
errISME Communications
IF6.1
err2026-04-11
err0
errOAAI
errLoretta De Chiara; Ryan Doughty; Nuria Estévez-Gómez; Pilar Gallego-García; Pilar Alvariño; Astrid Díez-Martín; Pedro Dávila Piñón; Todd J Treangen; Joaquín Cubiella; David Posada
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Ultra-high-throughput mapping of genetic design space
errNature
IF48.5
err2026-01-14
err0
PREAI
errKshitij Rai; Ronan W. O’Connell; Trenton C. Piepergerdes; Yiduo Wang; Lucas B. C. Brown; Kian D. Samra; Jack A. Wilson; Shujian Lin; Thomas H. Zhang; Eduardo M. Ramos; Andrew Sun; Bryce Kille; Kristen D. Curry; Jason W. Rocks; Todd J. Treangen; Pankaj Mehta; Caleb J. Bashor
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errSave
Inter-tool Analysis of a NIST Dataset for Assessing Baseline Nucleic Acid Sequence Screening
errApplied Biosafety
IF0.7
err2025-12-01
err0
PREAI
errLaird, Tyler S.; Flyangolts, Kevin; Bartling, Craig; Gemler, Bryan T.; Beal, Jacob; Mitchell, Tom; Murphy, Steven T.; Berlips, Jens; Foner, Leonard; Doughty, Ryan; Quintana, Felix; Nute, Michael; Treangen, Todd J.; Godbold, Gene; Ternus, Krista; Alexanian, Tessa; Wheeler, Nicole; Forry, Samuel P.
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Reference-guided assembly of metagenomes with MetaCompass
errCell Reports Methods
IF4.5
err2025-09-26
err0
errOAAI
errTu Luan; Victoria P. Cepeda-Espinoza; Bo Liu; Zac Bowen; Ujjwal Ayyangar; Mathieu Almeida; Sergey Koren; Todd J. Treangen; Adam Porter; Mihai Pop
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errSave
Impact of Ventilation on Respiratory Virus Transmission in College Residence Hall Cohorts: Potential for Causal Inference About Mode of Transmission
errInfluenza and Other Respiratory Viruses
IF4.2
err2025-07-02
err0
errOAAI
errT. Louis Gold; Kathleen M. McPhaul; Huang Lin; Ryan Doughty; Irina Maljkovic Berry; Filbert Hong; Jianyu Lai; Todd J. Treangen; Jelena Srebric; Donald K. Milton
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errSave
A class of benzofuranoindoline-bearing heptacyclic fungal RiPPs with anticancer activities
errNature Chemical Biology
IF13.7
err2025-06-23
err0
PREAI
errQiuyue Nie; Fanglong Zhao; Xuerong Yu; Mithun C. Madhusudhanan; Caleb Chang; Siting Li; Sandipan Roy Chowdhury; Bryce Kille; Andy Xu; Rory Sharkey; Chunxiao Sun; Hongzhi Zeng; Shuai Liu; Dishu Zhou; Xin Yu; Kevin Yang; Sandra A. C. Figueiredo; Maria Zotova; Zichen Hu; Alan Y. Du; Dongyin Guan; Rui Tang; Todd Treangen; Jin Wang; Pedro N. Leão; Yang Gao; Junjie Chen; Peng Liu; Hans Renata; Xue Gao
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Probiotic treatment induces sex-dependent neuroprotection and gut microbiome shifts after traumatic brain injury
errJOURNAL OF NEUROINFLAMMATION
IF10.1
err2025-04-20
err0
errOAAI
errHolcomb, Morgan; Marshall, Austin G.; Flinn, Hannah; Lozano-Cavazos, Mariana; Soriano, Sirena; Gomez-Pinilla, Fernando; Treangen, Todd J.
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Gut Microbiome dysbiosis and immune activation correlate with somatic and neuropsychiatric symptoms in COVID-19 patients
errJOURNAL OF TRANSLATIONAL MEDICINE
IF7.5
err2025-03-14
err1
errOAAI
errScalzo, Paula L.; Marshall, Austin G.; Soriano, Sirena; Curry, Kristen; Dulay, Mario; Hodics, Timea; Quigley, Eamonn M. M.; Treangen, Todd J.; Piskorz, Maria M.
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Multiplexed Detection, Partitioning, and Persistence of Wild-Type and Vaccine Strains of Measles, Mumps, and Rubella Viruses in Wastewater
errENVIRONMENTAL SCIENCE & TECHNOLOGY
IF11.3
err2024-12-09
err0
errOAAI
errWu, Jingjing; Wang, Michael X.; Kalvapalle, Prashant; Nute, Michael; Treangen, Todd J.; Ensor, Katherine; Hopkins, Loren; Poretsky, Rachel; Stadler, Lauren B.
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errSave
Olivar: towards automated variant aware primer design for multiplex tiled amplicon sequencing of pathogens
errNATURE COMMUNICATIONS
IF15.7
err2024-07-26
err0
errOAAI
errWang, Michael X.; Lou, Esther G.; Sapoval, Nicolae; Kim, Eddie; Kalvapalle, Prashant; Kille, Bryce; Elworth, R. A. Leo; Liu, Yunxi; Fu, Yilei; Stadler, Lauren B.; Treangen, Todd J.
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Graph-based self-supervised learning for repeat detection in metagenomic assembly
errGENOME RESEARCH
IF5.5
err2024-07-19
err1
PREAI
errAzizpour, Ali; Balaji, Advait; Treangen, Todd J.; Segarra, Santiago
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MethPhaser: methylation-based long-read haplotype phasing of human genomes
errNATURE COMMUNICATIONS
IF15.7
err2024-06-22
err0
errOAAI
errFu, Yilei; Aganezov, Sergey; Mahmoud, Medhat; Beaulaurier, John; Juul, Sissel; Treangen, Todd J.; Sedlazeck, Fritz J.
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Crykey: Rapid identification of SARS-CoV-2 cryptic mutations in wastewater
errNATURE COMMUNICATIONS
IF15.7
err2024-05-28
err0
errOAAI
errLiu, Yunxi; Sapoval, Nicolae; Gallego-Garcia, Pilar; Tomas, Laura; Posada, David; Treangen, Todd J.; Stadler, Lauren B.
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errSave
Sensitivity and consistency of long- and short-read metagenomics and epicPCR for the detection of antibiotic resistance genes and their bacterial hosts in wastewater
errJOURNAL OF HAZARDOUS MATERIALS
IF11.3
err2024-05-01
err0
errOAAI
errLou, Esther G.; Fu, Yilei; Wang, Qi; Treangen, Todd J.; Stadler, Lauren B.
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errSave
Unveiling microbial diversity: harnessing long-read sequencing technology
errNATURE METHODS
IF32.1
err2024-04-30
err6
PREAI
errAgustinho, Daniel P.; Fu, Yilei; Menon, Vipin K.; Metcalf, Ginger A.; Treangen, Todd J.; Sedlazeck, Fritz J.
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Identification of a novel CG307 sub-clade in thirdgenerationcephalosporin-resistant Klebsiella pneumoniae causing invasive infections in the USA
errMICROBIAL GENOMICS
IF4
err2024-02-26
err0
errOAAI
errAnand, Selvalakshmi Selvaraj; Wu, Chin -Ting; Bremer, Jordan; Bhatti, Micah; Treangen, Todd J.; Kalia, Awdhesh; Shelburne, Samuel A.; Shropshire, William C.
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The pan-microbiome profiling system Taxa4Meta identifies clinical dysbiotic features and classifies diarrheal disease
errJOURNAL OF CLINICAL INVESTIGATION
IF13.6
err2024-01-16
err2
errOAAI
errWu, Qinglong; Badu, Shyam; So, Sik Yu; Treangen, Todd J.; Savidge, Tor C.
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Evolutionary and spatiotemporal analyses reveal multiple introductions and cryptic transmission of SARS-CoV-2 VOC/VOI in Malta
errMICROBIOLOGY SPECTRUM
IF3.8
err2023-12-12
err2
errOAAI
errTrovao, Nidia S.; Pan, Vincent; Goel, Chirag; Gallego-Garcia, Pilar; Liu, Yunxi; Barbara, Christopher; Borg, Rebecca; Briffa, Mark; Cilia, Chanelle; Grech, Laura; Vassallo, Mario; Treangen, Todd J.; Posada, David; Beheshti, Afshin; Borg, Joseph; Zahra, Graziella
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The long game of tenure
errNATURE BIOTECHNOLOGY
IF41.7
err2023-08-25
err1
PREAI
errTreangen, Todd J.; Vardi, Moshe Y.
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errSave
Targeted Metagenomic Sequencing for Detection of Vertebrate Viruses in Wastewater for Public Health Surveillance
errACS ES&T WATER
IF4.3
err2023-08-09
err8
errOAAI
errMcCall, Camille; Elworth, Ryan A. Leo A.; Wylie, Kristine M.; Wylie, Todd N.; Dyson, Katherine; Doughty, Ryan; Treangen, Todd J.; Hopkins, Loren; Ensor, Katherine; Stadler, Lauren B.
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Research Directions

No research directions
Co-authors
Cooperation Journals
S
Steven L. Salzberg
H-index: 160 · Papers: 599
E
Eamonn M.M. Quigley
H-index: 116 · Papers: 963
J
James A. Yorke
H-index: 113 · Papers: 587
J
Junjie Chen
H-index: 107 · Papers: 702
C
Christopher E. Mason
H-index: 103 · Papers: 930
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