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Uğis Sarkans

EMBL-EBI

33H-index
86Paper Count
1.2WCitation Count
Published Papers 40
Publication Date
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A FAIR road to a bioAFM databank
errNature Methods
IF32.1
err2026-08-28
err0
PREAI
errJean-Luc Pellequer; Sebastian Aguayo; Andrea Alessandrini; David Alsteens; Toshio Ando; Audrey Beaussart; Michael Betton; Timo Betz; Kerstin G. Blank; Simone Bovio; Clément Campillo; Claudio Canale; Alexander X. Cartagena-Rivera; Filomena A. Carvalho; Ignacio Casuso; Guillaume Charras; Marti Checa; Liam Collins; Adai Colom; Luca Costa; Etienne Dague; Tanya E. S. Dahms; Pedro Jose de Pablo; Alexandra Delvallée; Simone Dinarelli; Lorna Dougan; Yves F. Dufrêne; Andra C. Dumitru; Yuri M. Efremov; Sofiane El-Kirat-Chatel; Paolo Facci; Georg E. Fantner; Amir Farokh Payam; Cécile Feuillie; Cristina Flors; Nancy Forde; Cécile Formosa-Dague; Gregory Francius; Clemens M. Franz; Kristian Franze; Ricardo Garcia; Sergi Garcia-Manyes; Núria Gavara; Marina I. Giannotti; Marco Girasole; Martin Guthold; George R. Heath; Céline Heu; Peter Hinterdorfer; Jamie K. Hobbs; Bart W. Hoogenboom; Sébastien Janel; Miklós Kellermayer; Petr Klapetek; Noriyuki Kodera; Melanie Koehler; Frank Lafont; Guillaume Lamour; Jessem Landoulsi; Valérie M. Laurent; Philippe Leclère; Malgorzata Lekka; Hongbin Li; Giovanni Longo; Arin Marchesi; Marion Mathelié-Guinlet; Gerald A. Meininger; Ioanna Mela; Pierre-Emmanuel Milhiet; Ruben Millan-Solsona; Tea Mišić Radić; Michaël Molinari; Fernando Moreno-Herrero; Michael A. Nash; Olivier Noël; Yoo Jin Oh; Laia Pasquina-Lemonche; Shivprasad Patil; Patricia Pedraz; Ana Paula Pêgo; Thomas T. Perkins; Martin Pesl; Tri Thanh Pham; Laura Picas; Alessandro Podestà; Johannes Preiner; Jan Přibyl; Roger Proksch; Pierre-Henri Puech; Alice L. B. Pyne; Manfred Radmacher; Lorena Redondo-Morata; Felix Rico; Wouter H. Roos; Robert Ros; Nuno C. Santos; Ugis Sarkans; Tilman E. Schäffer; Hermann Schillers; Zhifeng Shao; Delphine Sicard; Adam Cohen Simonsen; Igor Sokolov; Susana R. Sousa; Bjørn T. Stokke; Andreas Stylianou; Marek Szymonski; Florence Tama; Neil H. Thomson; Takayuki Uchihashi; Massimo Vassalli; Claude Verdier; Anthony Vial; Véronique Vié; Tomaso Zambelli; Renato Zenobi; Peng Zheng; Claire Valotteau
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BioStudies Database: a platform for life sciences study data dissemination
errJournal of Molecular Biology
IF4.5
err2026-05-20
err0
errOAAI
errAwais Athar; Ehsan Behrangi; Mauricio Martinez Jimenez; Jhoan Manuel Munoz Serrano; Juan Camilo Rada Mesa; Eliot Ragueneau; Ugis Sarkans
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errSave
Curcumin-Based Virtual Screening Identifies Inhibitors of SARS-CoV-2 Spike Protein and ACE2 Receptor Binding
errMedicinal Chemistry
IF2.6
err2026-01-01
err1
PREAI
errDelgado-Maldonado, Timoteo; Gonzalez-Morales, Luis D.; Vargas-Salas, Gilberto; Rojas-Verde, Guadalupe; Ortiz-Perez, Eyra; Paz-Gonzalez, Alma D.; Rivera, Gildardo
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errSave
BioSamples database: the global hub for sample metadata and multi-omics integration
errNUCLEIC ACIDS RESEARCH
IF13.1
err2025-11-01
err0
errOAAI
errGupta, Dipayan; Liyanage, Isuru; Perez-Riverol, Yasset; Ventura, Enrique Sapena; Teh, Wei Kheng; Van Den Bossche, Tim; Vijayaraja, Senthilnathan; Khen, Amnon; Sarkans, Ugis; Burdett, Tony; Rajan, Jeena
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errSave
EMBL's European Bioinformatics Institute (EMBL-EBI) in 2025
errNUCLEIC ACIDS RESEARCH
IF13.1
err2025-11-01
err2
PREAI
errThakur, Matthew; Bosc, Nicolas; Brooksbank, Cath; Ernst, Christina; Freeberg, Mallory A.; Gurwitz, Kim T.; Hermjakob, Henning; Hulcoop, David G.; Martin, Maria J.; McDonagh, Ellen M.; Mithani, Aziz; O'Boyle, Noel M.; Ochoa, David; Payne, Thomas; Perez-Riverol, Yasset; Sarkans, Ugis; Sokolov, Alexey; Staudt, Nicole; Stephenson, James D.; Tzampatzopoulou, Eleni; Vizcaino, Juan Antonio; Zdrazil, Barbara; McEntyre, Johanna
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errSave
bia-binder: a web-native cloud compute service for the bioimage analysis community
errBIOINFORMATICS
IF5.4
err2025-08-01
err0
errOAAI
errRussell, Craig T.; Burel, Jean-Marie; Athar, Awais; Li, Simon; Sarkans, Ugis; Swedlow, Jason; Brazma, Alvis; Hartley, Matthew; Uhlmann, Virginie
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errSave
EMBL's European Bioinformatics Institute (EMBL-EBI) in 2024
errNUCLEIC ACIDS RESEARCH
IF13.1
err2024-11-28
err1
errOAAI
errThakur, Matthew; Brooksbank, Catherine; Finn, Robert D.; Firth, Helen, V; Foreman, Julia; Freeberg, Mallory; Gurwitz, Kim T.; Harrison, Melissa; Hulcoop, David; Hunt, Sarah E.; Leach, Andrew R.; Levchenko, Mariia; Marques, Diana; Mcdonagh, Ellen M.; Mithani, Aziz; Parkinson, Helen; Perez-Riverol, Yasset; Perova, Zinaida; Sarkans, Ugis; Tirunagari, Santosh; Tzampatzopoulou, Eleni; Venkatesan, Aravind; Vizcaino, Juan-Antonio; Wingfield, Benjamin; Zdrazil, Barbara; Mcentyre, Johanna
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errSave
Be sustainable: EOSC-Life recommendations for implementation of FAIR principles in life science data handling
errEMBO JOURNAL
IF8.3
err2023-11-15
err8
errOAAI
errDavid, Romain; Rybina, Arina; Burel, Jean-Marie; Heriche, Jean-Karim; Audergon, Pauline; Boiten, Jan-Willem; Coppens, Frederik; Crockett, Sara; Exter, Katrina; Fahrner, Sven; Fratelli, Maddalena; Goble, Carole; Gormanns, Philipp; Grantner, Tobias; Gruening, Bjoern; Gurwitz, Kim Tamara; Hancock, John M.; Harmse, Henriette; Holub, Petr; Juty, Nick; Karnbach, Geoffrey; Karoune, Emma; Keppler, Antje; Lancelotti, Carla; Klemeier, Jessica; Legras, Jean-Luc; Lister, Allyson L.; Longo, Dario Livio; Ludwig, Rebecca; Madon, Benedicte; Massimi, Marzia; Matser, Vera; Matteoni, Rafaele; Mayrhofer, Michaela Th; Ohmann, Christian; Panagiotopoulou, Maria; Parkinson, Helen; Perseil, Isabelle; Pfander, Claudia; Pieruschka, Roland; Raess, Michael; Rauber, Andreas; Richard, Audrey S.; Romano, Paolo; Rosato, Antonio; Sanchez-Pla, Alex; Sansone, Susanna-Assunta; Sarkans, Ugis; Serrano-Solano, Beatriz; Tang, Jing; Tanoli, Ziaurrehman; Tedds, Jonathan; Wagener, Harald; Weise, Martin; Westerhoff, Hans, V; Wittner, Rudolf; Ewbank, Jonathan; Blomberg, Niklas; Gribbon, Philip
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The discovAIR project: a roadmap towards the Human Lung Cell Atlas
errEUROPEAN RESPIRATORY JOURNAL
IF21
err2022-01-27
err14
errOAAI
errLuecken, Malte D.; Zaragosi, Laure-Emmanuelle; Madissoon, Elo; Sikkema, Lisa; Firsova, Alexandra B.; De Domenico, Elena; Kuemmerle, Louis; Saglam, Adem; Berg, Marijn; Gay, Aurore C. A.; Schniering, Janine; Mayr, Christoph H.; Abalo, Xesus M.; Larsson, Ludvig; Sountoulidis, Alexandros; Teichmann, Sarah A.; Van Eunen, Karen; Koppelman, Gerard H.; Saeb-Parsy, Kourosh; Leroy, Sylvie; Powell, Pippa; Sarkans, Ugis; Timens, Wim; Lundeberg, Joakim; van den Berge, Maarten; Nilsson, Mats; Horvath, Peter; Denning, Jessica; Papatheodorou, Irene; Schultze, Joachim L.; Schiller, Herbert B.; Barbry, Pascal; Petoukhov, Ilya; Misharin, Alexander V.; Adcock, Ian M.; von Papen, Michael; Theis, Fabian J.; Samakovlis, Christos; Meyer, Kerstin B.; Nawijn, Martijn C.
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errSave
REMBI: Recommended Metadata for Biological Images-enabling reuse of microscopy data in biology
errNATURE METHODS
IF32.1
err2021-05-21
err63
errOAAI
errSarkans, Ugis; Chiu, Wah; Collinson, Lucy; Darrow, Michele C.; Ellenberg, Jan; Grunwald, David; Heriche, Jean-Karim; Iudin, Andrii; Martins, Gabriel G.; Meehan, Terry; Narayan, Kedar; Patwardhan, Ardan; Russell, Matthew Robert Geoffrey; Saibil, Helen R.; Strambio-De-Castillia, Caterina; Swedlow, Jason R.; Tischer, Christian; Uhlmann, Virginie; Verkade, Paul; Barlow, Mary; Bayraktar, Omer; Birney, Ewan; Catavitello, Cesare; Cawthorne, Christopher; Wagner-Conrad, Stephan; Duke, Elizabeth; Paul-Gilloteaux, Perrine; Gustin, Emmanuel; Harkiolaki, Maria; Kankaanpaa, Pasi; Lemberger, Thomas; McEntyre, Jo; Moore, Josh; Nicholls, Andrew W.; Onami, Shuichi; Parkinson, Helen; Parsons, Maddy; Romanchikova, Marina; Sofroniew, Nicholas; Swoger, Jim; Utz, Nadine; Voortman, Lenard M.; Wong, Frances; Zhang, Peijun; Kleywegt, Gerard J.; Brazma, Alvis
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errSave
A global view of standards for open image data formats and repositories
errNATURE METHODS
IF32.1
err2021-05-04
err33
errOAAI
errSwedlow, Jason R.; Kankaanpaa, Pasi; Sarkans, Ugis; Goscinski, Wojtek; Galloway, Graham; Malacrida, Leonel; Sullivan, Ryan P.; Hartel, Steffen; Brown, Claire M.; Wood, Christopher; Keppler, Antje; Paina, Federica; Loos, Ben; Zullino, Sara; Longo, Dario Livio; Aime, Silvio; Onami, Shuichi
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errSave
From ArrayExpress to BioStudies
errNUCLEIC ACIDS RESEARCH
IF13.1
err2020-11-19
err55
errOAAI
errSarkans, Ugis; Fullgrabe, Anja; Ali, Ahmed; Athar, Awais; Behrangi, Ehsan; Diaz, Nestor; Fexova, Silvie; George, Nancy; Iqbal, Haider; Kurri, Sandeep; Munoz, Jhoan; Rada, Juan; Papatheodorou, Irene; Brazma, Alvis
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errSave
Network integration and modelling of dynamic drug responses at multi-omics levels
errCOMMUNICATIONS BIOLOGY
IF5.1
err2020-10-15
err30
errOAAI
errSelevsek, Nathalie; Caiment, Florian; Nudischer, Ramona; Gmuender, Hans; Agarkova, Irina; Atkinson, Francis L.; Bachmann, Ivo; Baier, Vanessa; Barel, Gal; Bauer, Chris; Boerno, Stefan; Bosc, Nicolas; Clayton, Olivia; Cordes, Henrik; Deeb, Sally; Gotta, Stefano; Guye, Patrick; Hersey, Anne; Hunter, Fiona M. I.; Kunz, Laura; Lewalle, Alex; Lienhard, Matthias; Merken, Jort; Minguet, Jasmine; Oliveira, Bernardo; Pluess, Carla; Sarkans, Ugis; Schrooders, Yannick; Schuchhardt, Johannes; Smit, Ines; Thiel, Christoph; Timmermann, Bernd; Verheijen, Marcha; Wittenberger, Timo; Wolski, Witold; Zerck, Alexandra; Heymans, Stephane; Kuepfer, Lars; Roth, Adrian; Schlapbach, Ralph; Niederer, Steven; Herwig, Ralf; Kleinjans, Jos
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errSave
The EU-ToxRisk method documentation, data processing and chemical testing pipeline for the regulatory use of new approach methods
errARCHIVES OF TOXICOLOGY
IF6.9
err2020-07-06
err29
errOAAI
errKrebs, Alice; van Vugt-Lussenburg, Barbara M. A.; Waldmann, Tanja; Albrecht, Wiebke; Boei, Jan; ter Braak, Bas; Brajnik, Maja; Braunbeck, Thomas; Brecklinghaus, Tim; Busquet, Francois; Dinnyes, Andras; Dokler, Joh; Dolde, Xenia; Exner, Thomas E.; Fisher, Ciaran; Fluri, David; Forsby, Anna; Hengstler, Jan G.; Holzer, Anna-Katharina; Janstova, Zofia; Jennings, Paul; Kisitu, Jaffar; Kobolak, Julianna; Kumar, Manoj; Limonciel, Alice; Lundqvist, Jessica; Mihalik, Balazs; Moritz, Wolfgang; Pallocca, Giorgia; Ulloa, Andrea Paola Cediel; Pastor, Manuel; Rovida, Costanza; Sarkans, Ugis; Schimming, Johannes P.; Schmidt, Bela Z.; Stoeber, Regina; Strassfeld, Tobias; van de Water, Bob; Wilmes, Anja; van der Burg, Bart; Verfaillie, Catherine M.; von Hellfeld, Rebecca; Vrieling, Harry; Vrijenhoek, Nanette G.; Leist, Marcel
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A call for public archives for biological image data
errNATURE METHODS
IF32.1
err2018-10-30
err81
errOAAI
errEllenberg, Jan; Swedlow, Jason R.; Barlow, Mary; Cook, Charles E.; Sarkans, Ugis; Patwardhan, Ardan; Brazma, Alvis; Birney, Ewan
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errSave
ArrayExpress update - from bulk to single-cell expression data
errNUCLEIC ACIDS RESEARCH
IF13.1
err2018-10-24
err434
errOAAI
errAthar, Awais; Fullgrabe, Anja; George, Nancy; Iqbal, Haider; Huerta, Laura; Ali, Ahmed; Snow, Catherine; Fonseca, Nuno A.; Petryszak, Robert; Papatheodorou, Irene; Sarkans, Ugis; Brazma, Alvis
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errSave
Image Data Resource: a bioimage data integration and publication platform (vol 14, pg 775, 2017)
errNATURE METHODS
IF32.1
err2018-10-04
err1
errOAAI
errWilliams, Eleanor; Moore, Josh; Li, Simon W.; Rustici, Gabriella; Tarkowska, Aleksandra; Chessel, Anatole; Leo, Simone; Antal, Balint; Ferguson, Richard K.; Sarkans, Ugis; Brazma, Alvis; Salas, Rafael E. Carazo; Swedlow, Jason R.
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errSave
The BioStudies database-one stop shop for all data supporting a life sciences study
errNUCLEIC ACIDS RESEARCH
IF13.1
err2017-10-23
err105
errOAAI
errSarkans, Ugis; Gostev, Mikhail; Athar, Awais; Behrangi, Ehsan; Melnichuk, Olga; Ali, Ahmed; Minguet, Jasmine; Rada, Juan Camillo; Snow, Catherine; Tikhonov, Andrew; Brazma, Alvis; McEntyre, Johanna
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errSave
A model-based assay design to reproduce in vivo patterns of acute drug-induced toxicity
errARCHIVES OF TOXICOLOGY
IF6.9
err2017-08-29
err18
errOAAI
errKuepfer, Lars; Clayton, Olivia; Thiel, Christoph; Cordes, Henrik; Nudischer, Ramona; Blank, Lars M.; Baier, Vanessa; Heymans, Stephane; Caiment, Florian; Roth, Adrian; Fluri, David A.; Kelm, Jens M.; Castell, Jose; Selevsek, Nathalie; Schlapbach, Ralph; Keun, Hector; Hynes, James; Sarkans, Ugis; Gmuender, Hans; Herwig, Ralf; Niederer, Steven; Schuchhardt, Johannes; Segall, Matthew; Kleinjans, Jos
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errSave
Image Data Resource: a bioimage data integration and publication platform
errNATURE METHODS
IF32.1
err2017-06-19
err169
errOAAI
errWilliams, Eleanor; Moore, Josh; Li, Simon W.; Rustici, Gabriella; Tarkowska, Aleksandra; Chessel, Anatole; Leo, Simone; Antal, Balint; Ferguson, Richard K.; Sarkans, Ugis; Brazma, Alvis; Salas, Rafael E. Carazo; Swedlow, Jason R.
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Research Directions

No research directions
Co-authors
Cooperation Journals
P
Peer Bork
H-index: 233 · Papers: 948
M
Mark I. McCarthy
H-index: 222 · Papers: 1.5K
T
Tim D. Spector
H-index: 199 · Papers: 1.6K
R
Ruedi Aebersold
H-index: 198 · Papers: 1.2K
C
Chris Sander
H-index: 191 · Papers: 849
View more