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Camargo, Antonio Pedro; Call, Lee; Roux, Simon; Nayfach, Stephen; Huntemann, Marcel; Palaniappan, Krishnaveni; Ratner, Anna; Chu, Ken; Mukherjeep, Supratim; Reddy, T. B. K.; Chen, I-Min A.; Ivanova, Natalia N.; Eloe-Fadrosh, Emiley A.; Woyke, Tanja; Baltrus, David A.; Castaneda-Barba, Salvador; de la Cruz, Fernando; Funnell, Barbara E.; Hall, James P. J.; Mukhopadhyay, Aindrila; Rocha, Eduardo P. C.; Stalder, Thibault; Top, Eva; Kyrpides, Nikos C. .png)
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SaveTerabase-Scale Coassembly of a Tropical Soil MicrobiomeRiley, Robert; Bowers, Robert M.; Camargo, Antonio Pedro; Campbell, Ashley; Egan, Rob; Eloe-Fadrosh, Emiley A.; Foster, Brian; Hofmeyr, Steven; Huntemann, Marcel; Kellom, Matthew; Kimbrel, Jeffrey A.; Oliker, Leonid; Yelick, Katherine; Pett-Ridge, Jennifer; Salamov, Asaf; Varghese, Neha J.; Clum, Alicia Share Save Discovery of a novel filamentous prophage in the genome of the Mimosa pudica microsymbiont Cupriavidus taiwanensis STM 6018Klonowska, Agnieszka; Ardley, Julie; Moulin, Lionel; Zandberg, Jaco; Patrel, Delphine; Gollagher, Margaret; Marinova, Dora; Reddy, T. B. K.; Varghese, Neha; Huntemann, Marcel; Woyke, Tanja; Seshadri, Rekha; Ivanova, Natalia; Kyrpides, Nikos; Reeve, Wayne Share Save Plant microbiomes harbor potential to promote nutrient turnover in impoverished substrates of a Brazilian biodiversity hotspotCamargo, Antonio P.; de Souza, Rafael S. C.; Jose, Juliana; Gerhardt, Isabel R.; Dante, Ricardo A.; Mukherjee, Supratim; Huntemann, Marcel; Kyrpides, Nikos C.; Carazzolle, Marcelo F.; Arruda, Paulo Share Save Expanding the genomic encyclopedia of Actinobacteria with 824 isolate reference genomesSeshadri, Rekha; Roux, Simon; Huber, Katharina J.; Wu, Dongying; Yu, Sora; Udwary, Dan; Call, Lee; Nayfach, Stephen; Hahnke, Richard L.; Pukall, Rudiger; White, James R.; Varghese, Neha J.; Webb, Cody; Palaniappan, Krishnaveni; Reimer, Lorenz C.; Sarda, Joaquim; Bertsch, Jonathon; Mukherjee, Supratim; Reddy, T. B. K.; Hajek, Patrick P.; Huntemann, Marcel; Chen, I-Min A.; Spunde, Alex; Clum, Alicia; Shapiro, Nicole; Wu, Zong-Yen; Zhao, Zhiying; Zhou, Yuguang; Evtushenko, Lyudmila; Thijs, Sofie; Stevens, Vincent; Eloe-Fadrosh, Emiley A.; Mouncey, Nigel J.; Yoshikuni, Yasuo; Whitman, William B.; Klenk, Hans-Peter; Woyke, Tanja; Goeker, Markus; Kyrpides, Nikos C.; Ivanova, Natalia N. Share Save The IMG/M data management and analysis system v.7: content updates and new featuresChen, I-Min A.; Chu, Ken; Palaniappan, Krishnaveni; Ratner, Anna; Huang, Jinghua; Huntemann, Marcel; Hajek, Patrick; Ritter, Stephan J.; Webb, Cody; Wu, Dongying; Varghese, Neha J.; Reddy, T. B. K.; Mukherjee, Supratim; Ovchinnikova, Galina; Nolan, Matt; Seshadri, Rekha; Roux, Simon; Visel, Axel; Woyke, Tanja; Eloe-Fadrosh, Emiley A.; Kyrpides, Nikos C.; Ivanova, Natalia N. Share Save The National Microbiome Data Collaborative Data Portal: an integrated multi-omics microbiome data resourceEloe-Fadrosh, Emiley A.; Ahmed, Faiza; Anubhav; Babinski, Michal; Baumes, Jeffrey; Borkum, Mark; Bramer, Lisa; Canon, Shane; Christianson, Danielle S.; Corilo, Yuri E.; Davenport, Karen W.; Davis, Brandon; Drake, Meghan; Duncan, William D.; Flynn, Mark C.; Hays, David; Hu, Bin; Huntemann, Marcel; Kelliher, Julia; Lebedeva, Sofya; Li, Po-E; Lipton, Mary; Lo, Chien-Chi; Martin, Stanton; Millard, David; Miller, Kayd; Miller, Mark A.; Piehowski, Paul; Jackson, Elais Player; Purvine, Samuel; Reddy, T. B. K.; Richardson, Rachel; Rudolph, Marisa; Sarrafan, Setareh; Shakya, Migun; Smith, Montana; Stratton, Kelly; Sundaramurthi, Jagadish Chandrabose; Vangay, Pajau; Winston, Donald; Wood-Charlson, Elisha M.; Xu, Yan; Chain, Patrick S. G.; McCue, Lee Ann; Mans, Douglas; Mungall, Christopher J.; Mouncey, Nigel J.; Fagnan, Kjiersten Share Save Sodalis ligni Strain 159R Isolated from an Anaerobic Lignin-Degrading ConsortiumChaput, Gina; Ford, Jacob; DeDiego, Lani; Narayanan, Achala; Tam, Wing Yin; Whalen, Meghan; Huntemann, Marcel; Clum, Alicia; Spunde, Alex; Pillay, Manoj; Palaniappan, Krishnaveni; Varghese, Neha; Mikhailova, Natalia; Chen, I-Min; Stamatis, Dimitrios; Reddy, T. B. K.; O'Malley, Ronan; Daum, Chris; Shapiro, Nicole; Ivanova, Natalia; Kyrpides, Nikos C.; Woyke, Tanja; Glavina del Rio, Tijana; DeAngelis, Kristen M. Share Save Medicago root nodule microbiomes: insights into a complex ecosystem with potential candidates for plant growth promotionMartinez-Hidalgo, Pilar; Humm, Ethan A.; Still, David W.; Shi, Baochen; Pellegrini, Matteo; de la Roca, Gabriela; Veliz, Esteban; Maymon, Maskit; Bru, Pierrick; Huntemann, Marcel; Clum, Alicia; Palaniappan, Krishnaveni; Varghese, Neha; Mukherjee, Supratim; Reddy, T. B. K.; Daum, Chris; Ivanova, Natalia N.; Kyrpides, Nikos C.; Shapiro, Nicole; Eloe-Fadrosh, Emiley A.; Hirsch, Ann M. Share Save The biogeographic differentiation of algal microbiomes in the upper ocean from pole to poleMartin, Kara; Schmidt, Katrin; Toseland, Andrew; Boulton, Chris A.; Barry, Kerrie; Beszteri, Bank; Brussaard, Corina P. D.; Clum, Alicia; Daum, Chris G.; Eloe-Fadrosh, Emiley; Fong, Allison; Foster, Brian; Foster, Bryce; Ginzburg, Michael; Huntemann, Marcel; Ivanova, Natalia N.; Kyrpides, Nikos C.; Lindquist, Erika; Mukherjee, Supratim; Palaniappan, Krishnaveni; Reddy, T. B. K.; Rizkallah, Mariam R.; Roux, Simon; Timmermans, Klaas; Tringe, Susannah G.; van de Poll, Willem H.; Varghese, Neha; Valentin, Klaus U.; Lenton, Timothy M.; Grigoriev, Igor V.; Leggett, Richard M.; Moulton, Vincent; Mock, Thomas Share Save DOE JGI Metagenome WorkflowClum, Alicia; Huntemann, Marcel; Bushnell, Brian; Foster, Brian; Foster, Bryce; Roux, Simon; Hajek, Patrick P.; Varghese, Neha; Mukherjee, Supratim; Reddy, T. B. K.; Daum, Chris; Yoshinaga, Yuko; O'Malley, Ronan; Seshadri, Rekha; Kyrpides, Nikos C.; Eloe-Fadrosh, Emiley A.; Chen, I-Min A.; Copeland, Alex; Ivanova, Natalia N. Share Save Share Save Genomics, Exometabolomics, and Metabolic Probing Reveal Conserved Proteolytic Metabolism of Thermoflexus hugenholtzii and Three Candidate Species From China and JapanThomas, Scott C.; Payne, Devon; Tamadonfar, Kevin O.; Seymour, Cale O.; Jiao, Jian-Yu; Murugapiran, Senthil K.; Lai, Dengxun; Lau, Rebecca; Bowen, Benjamin P.; Silva, Leslie P.; Louie, Katherine B.; Huntemann, Marcel; Clum, Alicia; Spunde, Alex; Pillay, Manoj; Palaniappan, Krishnaveni; Varghese, Neha; Mikhailova, Natalia; Chen, I-Min; Stamatis, Dimitrios; Reddy, T. B. K.; O'Malley, Ronan; Daum, Chris; Shapiro, Nicole; Ivanova, Natalia; Kyrpides, Nikos C.; Woyke, Tanja; Eloe-Fadrosh, Emiley; Hamilton, Trinity L.; Dijkstra, Paul; Dodsworth, Jeremy A.; Northen, Trent R.; Li, Wen-Jun; Hedlund, Brian P. Share Save A genomic catalog of Earth's microbiomes (Nov, 10.1038/s41587-020-0718-6, 2020)Nayfach, Stephen; Roux, Simon; Seshadri, Rekha; Udwary, Daniel; Varghese, Neha; Schulz, Frederik; Wu, Dongying; Paez-Espino, David; Chen, I- Min; Huntemann, Marcel; Palaniappan, Krishna; Ladau, Joshua; Mukherjee, Supratim; Reddy, T. B. K.; Nielsen, Torben; Kirton, Edward; Faria, Jose P.; Edirisinghe, Janaka N.; Henry, Christopher S.; Jungbluth, Sean P.; Chivian, Dylan; Dehal, Paramvir; Wood-Charlson, Elisha M.; Arkin, Adam P.; Tringe, Susannah G.; Visel, Axel; Woyke, Tanja; Mouncey, Nigel J.; Ivanova, Natalia N.; Kyrpides, Nikos C.; Eloe-Fadrosh, Emiley A. Share Save A genomic catalog of Earth's microbiomes (November, 10.1038/s41587-020-0718-6, 2020)Nayfach, Stephen; Roux, Simon; Seshadri, Rekha; Udwary, Daniel; Varghese, Neha; Schulz, Frederik; Wu, Dongying; Paez-Espino, David; Chen, I-Min; Huntemann, Marcel; Palaniappan, Krishna; Ladau, Joshua; Mukherjee, Supratim; Reddy, T. B. K.; Nielsen, Torben; Kirton, Edward; Faria, Jose P.; Edirisinghe, Janaka N.; Henry, Christopher S.; Jungbluth, Sean P.; Chivian, Dylan; Dehal, Paramvir; Wood-Charlson, Elisha M.; Arkin, Adam P.; Tringe, Susannah G.; Visel, Axel; Woyke, Tanja; Mouncey, Nigel J.; Ivanova, Natalia N.; Kyrpides, Nikos C.; Eloe-Fadrosh, Emiley A. Share Save A genomic catalog of Earth's microbiomesNayfach, Stephen; Roux, Simon; Seshadri, Rekha; Udwary, Daniel; Varghese, Neha; Schulz, Frederik; Wu, Dongying; Paez-Espino, David; Chen, I-Min; Huntemann, Marcel; Palaniappan, Krishna; Ladau, Joshua; Mukherjee, Supratim; Reddy, T. B. K.; Nielsen, Torben; Kirton, Edward; Faria, Jose P.; Edirisinghe, Janaka N.; Henry, Christopher S.; Jungbluth, Sean P.; Chivian, Dylan; Dehal, Paramvir; Wood-Charlson, Elisha M.; Arkin, Adam P.; Tringe, Susannah G.; Visel, Axel; Woyke, Tanja; Mouncey, Nigel J.; Ivanova, Natalia N.; Kyrpides, Nikos C.; Eloe-Fadrosh, Emiley A. Share Save The IMG/M data management and analysis system v.6.0: new tools and advanced capabilitiesChen, I-Min A.; Chu, Ken; Palaniappan, Krishnaveni; Ratner, Anna; Huang, Jinghua; Huntemann, Marcel; Hajek, Patrick; Ritter, Stephan; Varghese, Neha; Seshadri, Rekha; Roux, Simon; Woyke, Tanja; Eloe-Fadrosh, Emiley A.; Ivanova, Natalia N.; Kyrpides, Nikos C. Share Save Molecular Dialogues between Early Divergent Fungi and Bacteria in an Antagonism versus a MutualismLastovetsky, Olga A.; Krasnovsky, Lev D.; Qin, Xiaotian; Gaspar, Maria L.; Gryganskyi, Andrii P.; Huntemann, Marcel; Clum, Alicia; Pillay, Manoj; Palaniappan, Krishnaveni; Varghese, Neha; Mikhailova, Natalia; Stamatis, Dimitrios; Reddy, T. B. K.; Daum, Chris; Shapiro, Nicole; Ivanova, Natalia; Kyrpides, Nikos; Woyke, Tanja; Pawlowska, Teresa E. Share Save Influence of the polar light cycle on seasonal dynamics of an Antarctic lake microbial communityPanwar, Pratibha; Allen, Michelle A.; Williams, Timothy J.; Hancock, Alyce M.; Brazendale, Sarah; Bevington, James; Roux, Simon; Paez-Espino, David; Nayfach, Stephen; Berg, Maureen; Schulz, Frederik; Chen, I-Min A.; Huntemann, Marcel; Shapiro, Nicole; Kyrpides, Nikos C.; Woyke, Tanja; Eloe-Fadrosh, Emiley A.; Cavicchioli, Ricardo Share Save The National Microbiome Data Collaborative: enabling microbiome scienceWood-Charlson, Elisha M.; Anubhav; Auberry, Deanna; Blanco, Hannah; Borkum, Mark I.; Corilo, Yuri E.; Davenport, Karen W.; Deshpande, Shweta; Devarakonda, Ranjeet; Drake, Meghan; Duncan, William D.; Flynn, Mark C.; Hays, David; Hu, Bin; Huntemann, Marcel; Li, Po-E; Lipton, Mary; Lo, Chien-Chi; Millard, David; Miller, Kayd; Piehowski, Paul D.; Purvine, Samuel; Reddy, T. B. K.; Shakya, Migun; Sundaramurthi, Jagadish Chandrabose; Vangay, Pajau; Wei, Yaxing; Wilson, Bruce E.; Canon, Shane; Chain, Patrick S. G.; Fagnan, Kjiersten; Martin, Stanton; McCue, Lee Ann; Mungall, Christopher J.; Mouncey, Nigel J.; Maxon, Mary E.; Eloe-Fadrosh, Emiley A. Share Save 
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