Nicholas J. Loman - Publications, H-index & Citations

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Nicholas J. Loman

institute of microbiology and infection

82H-index

289Paper Count

4.6WCitation Count

Published Papers 75

Publication Date

Pathogen detection in central nervous system infections: moving metagenomic sequencing closer to clinical practice

BMC Infectious Diseases

IF3

2026-06-11

OAAI

Nicola Cumley; Josh Quick; Thomas Brier; Sam Wilkinson; Chris Kent; Zaki Hassan-Smith; Nicholas Loman; Ghaniah Hassan-Smith

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Global approaches to infectious disease surveillance and modeling

Nature Medicine

IF50

2026-05-20

PREAI

Mark P. Khurana; Joseph L.-H. Tsui; Bernardo Gutierrez; Ayush Chopra; Neil Scheidwasser; Harrison Bo Hua Zhu; Serina Y. Chang; David A. Duchêne; Cathal Mills; Rhys P. D. Inward; Benjamin Reddy; John Brittain; Abhishek Dasgupta; James Sheldon; George Githinji; John S. Brownstein; Mélodie Monod; Luca Ferretti; Sivan Bershan; Simon Tietze; Leo Ferres; Silvia Argimón; Timothy J. Dallman; Etien Koua; Oliver Ratmann; Simon Cauchemez; Lauren A. Meyers; Lili Su; Alessandro Vespignani; Paul Pronyk; Áine O’Toole; Andrew Rambaut; Nicholas J. Loman; Edward C. Holmes; Seth Flaxman; Nicola Mulder; Oliver W. Morgan; Houriiyah Tegally; Manuel Gomez-Rodriguez; Nigel Shadbolt; Christian Happi; Meera Chand; Sofonias K. Tessema; Placide Mbala-Kingebeni; Marc A. Suchard; Oliver G. Pybus; Samuel V. Scarpino; Samir Bhatt; Moritz U. G. Kraemer

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First imported cases of MPXV Clade Ib from Goma, Democratic Republic of the Congo

Communications Medicine

IF6.3

2025-11-15

OAAI

Daniel Mukadi-Bamuleka; Eddy Kinganda-Lusamaki; Noella Mulopo-Mukanya; Adrienne Amuri-Aziza; Áine O’Toole; Sydney Merritt; Brigitte Modadra-Madakpa; Guy Mutombo-Ndongala; Emmanuel Hasivirwe Vakaniaki; Cris Kacita; Gaston Lubambo Maboko; Jean-Claude Makangara-Cigolo; Michel Ngimba; Emmanuel Lokilo-Lofiko; Elisabeth Pukuta-Simbu; Gradi Luakanda-Ndelemo; Tavia Bodisa-Matamu; Zephanie Paluku-Kalimuli; Prince Akil-Bandali; Sifa Kavira-Bapitani; Daan Jansen; Adèle Kavira-Kamaliro; Emile Muhindo-Milonde; Jeriel Mufungizi; Yves Birindwa-Hamisi; Hugo Kavunga; Olivier Tshiani; Sabin Sabiti Nundu; Laurens Liesenborghs; Nicole A. Hoff; Megan Halbrook; Robert Shongo; Ahidjo Ayouba; Genay Pilarowski; Alain Kakule Mangolopa; Amos Kiuka Ebondo; Nicola Low; Souradet Y. Shaw; Sam Wilkinson; Sofonias Kifle Tessema; Lorenzo Subissi; Eric Delaporte; Koen Vercauteren; Tony Wawina-Bokalanga; Anne W. Rimoin; Lisa E. Hensley; Martine Peeters; Nicholas Loman; Andrew Rambaut; Jean-Jacques Muyembe-Tamfum; Jason Kindrachuk; Placide Mbala-Kingebeni; Steve Ahuka-Mundeke

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Whole genome sequencing of hepatitis B virus using tiled amplicon (HEPTILE) and probe based enrichment on Illumina and Nanopore platforms

SCIENTIFIC REPORTS

IF3.9

2025-02-17

OAAI

Lumley, Sheila F.; Kent, Chris; Jennings, Daisy; Chai, Haiting; Airey, George; Waddilove, Elizabeth; Delphin, Marion; Trebes, Amy; Mcnaughton, Anna L.; Mohammed, Khadija Said; Wilkinson, Sam A. J.; Wu, Yanxia; MacIntyre-Cockett, George; Kimono, Beatrice; Mbonye, Kwizera Moses; Ojambo, Kevin; Maponga, Tongai G.; Tan, Cedric C. S.; de Lara, Catherine; Martin, Jacqueline; Campbell, James; Van Schalkwyk, Marije; Goedhals, Dominique; Newton, Robert; Barnes, Eleanor; Loman, Nicholas J.; Piazza, Paolo; Quick, Joshua; Ansari, M. Azim; Matthews, Philippa C.

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Tracking arboviruses, their transmission vectors and potential hosts by nanopore sequencing of mosquitoes

MICROBIAL GENOMICS

IF4

2024-01-19

OAAI

Mirza, Jeremy D.; Guimaraes, Lilian de Oliveira; Wilkinson, Sam; Rocha, Esmenia C.; Bertanhe, Mayara; Helfstein, Vanessa Christe; de-Deus, Juliana Telles; Claro, Ingra M.; Cumley, Nicola; Quick, Joshua; Faria, Nuno R.; Sabino, Ester C.; Kirchgatter, Karin; Loman, Nicholas J.

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Prevalence and Persistence of Antibiotic Resistance Determinants in the Gut of Travelers Returning to the United Kingdom is Associated with Colonization by Pathogenic Escherichia coli

MICROBIOLOGY SPECTRUM

IF3.8

2023-08-17

OAAI

Dallman, Timothy J.; Neuert, Saskia; Turienzo, Cristina Fernandez; Berin, Michelle; Richardson, Emily; Fuentes-Utrilla, Pablo; Loman, Nicholas; Gharbia, Saheer; Jenkins, Claire; Behrens, Ron H.; Godbole, Gauri; Brown, Michael

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Multiplex MinION sequencing suggests enteric adenovirus F41 genetic diversity comparable to pre- COVID-19 era

MICROBIAL GENOMICS

IF4

2023-01-06

OAAI

Maes, Mailis; Khokhar, Fahad; Wilkinson, Sam A. J.; Smith, Andrew D.; Kovalenko, Ganna; Dougan, Gordon; Quick, Joshua; Loman, Nicholas J.; Baker, Stephen; Curran, Martin D.; Skittrall, Jordan P.; Houldcroft, Charlotte J.

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The origins and molecular evolution of SARS-CoV-2 lineage B.1.1.7 in the UK

VIRUS EVOLUTION

IF4

2022-08-26

OAAI

Hill, Verity; Du Plessis, Louis; Peacock, Thomas P.; Aggarwal, Dinesh; Colquhoun, Rachel; Carabelli, Alesandro M.; Ellaby, Nicholas; Gallagher, Eileen; Groves, Natalie; Jackson, Ben; McCrone, J. T.; O'Toole, Aine; Price, Anna; Sanderson, Theo; Scher, Emily; Southgate, Joel; Volz, Erik; Barclay, Wendy S.; Barrett, Jeffrey C.; Chand, Meera; Connor, Thomas; Goodfellow, Ian; Gupta, Ravindra K.; Harrison, Ewan M.; Loman, Nicholas; Myers, Richard; Robertson, David L.; Pybus, Oliver G.; Rambaut, Andrew

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Recurrent SARS-CoV-2 mutations in immunodeficient patients

VIRUS EVOLUTION

IF4

2022-08-11

OAAI

Wilkinson, Sam A. J.; Richter, Alex; Casey, Anna; Osman, Husam; Mirza, Jeremy D.; Stockton, Joanne; Quick, Josh; Ratcliffe, Liz; Sparks, Natalie; Cumley, Nicola; Poplawski, Radoslaw; Nicholls, Sam; Kele, Beatrix; Harris, Kathryn; Peacock, Thomas P.; Loman, Nicholas J.

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Molecular and genomic investigation of an urban outbreak of dengue virus serotype 2 in Angola, 2017-2019

PLOS NEGLECTED TROPICAL DISEASES

IF3.4

2022-05-18

OAAI

Neto, Zoraima; Martinez, Pedro A.; Hill, Sarah C.; Jandondo, Domingos; Theze, Julien; Mirandela, Marinela; Aguiar, Renato Santana; Xavier, Joilson; Sebastiao, Cruz dos Santos; Candido, Ana Luisa Micolo; Vaz, Filipa; Castro, Gisel Reyes; Paixao, Joana Paula; Loman, Nicholas J.; Lemey, Philippe; Pybus, Oliver G.; Vasconcelos, Jocelyne; Faria, Nuno Rodrigues; de Morais, Joana

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SARS-CoV-2 Testing in the Community: Testing Positive Samples with the TaqMan SARS-CoV-2 Mutation Panel To Find Variants in Real Time

JOURNAL OF CLINICAL MICROBIOLOGY

IF5.4

2022-04-20

OAAI

Ashford, Fiona; Best, Angus; Dunn, Steven J.; Ahmed, Zahra; Siddiqui, Henna; Melville, Jordan; Wilkinson, Samuel; Mirza, Jeremy; Cumley, Nicola; Stockton, Joanne; Ferguson, Jack; Wheatley, Lucy; Ratcliffe, Elizabeth; Casey, Anna; Plant, Tim; Quick, Joshua; Richter, Alex; Loman, Nicholas; McNally, Alan

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Observations of SARS-CoV-2 variant of concern B.1.1.7 at the UK's largest hospital trust

JOURNAL OF INFECTION

IF11.9

2021-10-01

OAAI

Garvey, Mark I.; McMurray, Claire; Casey, Anna L.; Ratcliffe, Liz; Stockton, Joanne; Wilkinson, Martyn A. C.; Holden, Elisabeth; Osman, Husam; Loman, Nick J.

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CLIMB-COVID: continuous integration supporting decentralised sequencing for SARS-CoV-2 genomic surveillance

GENOME BIOLOGY

IF9.4

2021-07-01

OAAI

Nicholls, Samuel M.; Poplawski, Radoslaw; Bull, Matthew J.; Underwood, Anthony; Chapman, Michael; Abu-Dahab, Khalil; Taylor, Ben; Colquhoun, Rachel M.; Rowe, Will P. M.; Jackson, Ben; Hill, Verity; O'Toole, Aine; Rey, Sara; Southgate, Joel; Amato, Roberto; Livett, Rich; Goncalves, Sonia; Harrison, Ewan M.; Peacock, Sharon J.; Aanensen, David M.; Rambaut, Andrew; Connor, Thomas R.; Loman, Nicholas J.

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Details of SARS-CoV-2 reinfections at a major UK tertiary centre

JOURNAL OF INFECTION

IF11.9

2021-06-01

OAAI

Garvey, Mark I.; Casey, Anna L.; Wilkinson, Martyn A. C.; Ratcliffe, Liz; McMurray, Claire; Stockton, Joanne; Holden, Elisabeth; Osman, Husam; Loman, Nick J.

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Pseudomonas aeruginosa infection in augmented care: the molecular ecology and transmission dynamics in four large UK hospitals

JOURNAL OF HOSPITAL INFECTION

IF3.1

2021-05-01

OAAI

Halstead, F. D.; Quick, J.; Niebel, M.; Garvey, M.; Cumley, N.; Smith, R.; Neal, T.; Roberts, P.; Hardy, K.; Shabir, S.; Walker, J. T.; Hawkey, P.; Loman, N. J.

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Transmission, adaptation and geographical spread of the Pseudomonas aeruginosa Liverpool epidemic strain

MICROBIAL GENOMICS

IF4

2021-03-01

OAAI

Moore, Matthew P.; Lamont, Iain L.; Williams, David; Paterson, Steve; Kukavica-Ibrulj, Irena; Tucker, Nicholas P.; Kenna, Dervla T. D.; Turton, Jane F.; Jeukens, Julie; Freschi, Luca; Wee, Bryan A.; Loman, Nicholas J.; Holden, Stephen; Manzoor, Susan; Hawkey, Peter; Southern, Kevin W.; Walshaw, Martin J.; Levesque, Roger C.; Fothergill, Joanne L.; Winstanley, Craig

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Post-acute COVID-19 associated with evidence of bystander T-cell activation and a recurring antibiotic-resistant bacterial pneumonia

ELIFE

IF0

2020-12-17

OAAI

Gregorova, Michaela; Morse, Daniel; Brignoli, Tarcisio; Steventon, Joseph; Hamilton, Fergus; Albur, Mahableshwar; Arnold, David; Thomas, Matthew; Halliday, Alice; Baum, Holly; Rice, Christopher; Avison, Matthew B.; Davidson, Andrew D.; Santopaolo, Marianna; Oliver, Elizabeth; Goenka, Anu; Finn, Adam; Wooldridge, Linda; Amulic, Borko; Boyton, Rosemary J.; Altmann, Daniel M.; Butler, David K.; McMurray, Claire; Stockton, Joanna; Nicholls, Sam; Cooper, Charles; Loman, Nicholas; Cox, Michael J.; Rivino, Laura; Massey, Ruth C.

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Treatment of COVID-19 with remdesivir in the absence of humoral immunity: a case report

NATURE COMMUNICATIONS

IF15.7

2020-12-14

OAAI

Buckland, Matthew S.; Galloway, James B.; Fhogartaigh, Caoimhe Nic; Meredith, Luke; Provine, Nicholas M.; Bloor, Stuart; Ogbe, Ane; Zelek, Wioleta M.; Smielewska, Anna; Yakovleva, Anna; Mann, Tiffeney; Bergamaschi, Laura; Turner, Lorinda; Mescia, Frederica; Toonen, Erik J. M.; Hackstein, Carl-Philipp; Akther, Hossain Delowar; Vieira, Vinicius Adriano; Ceron-Gutierrez, Lourdes; Periselneris, Jimstan; Kiani-Alikhan, Sorena; Grigoriadou, Sofia; Vaghela, Devan; Lear, Sara E.; Torok, M. Estee; Hamilton, William L.; Stockton, Joanne; Quick, Josh; Nelson, Peter; Hunter, Michael; Coulter, Tanya I.; Devlin, Lisa; Bradley, John R.; Smith, Kenneth G. C.; Ouwehand, Willem H.; Estcourt, Lise; Harvala, Heli; Roberts, David J.; Wilkinson, Ian B.; Screaton, Nick; Loman, Nicholas; Doffinger, Rainer; Lyons, Paul A.; Morgan, B. Paul; Goodfellow, Ian G.; Klenerman, Paul; Lehner, Paul J.; Matheson, Nicholas J.; Thaventhiran, James E. D.

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Screening faecal microbiota transplant donors for SARS-CoV-2 by molecular testing of stool is the safest way forward

LANCET GASTROENTEROLOGY & HEPATOLOGY

IF38.6

2020-06-01

OAAI

Green, Christopher A.; Quraishi, Mohammed N.; Shabir, Sahida; Sharma, Naveen; Hansen, Richard; Gaya, Daniel R.; Hart, Ailsa L.; Loman, Nicholas J.; Iqbal, Tariq H.

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A Pilot Integrative Analysis of Colonic Gene Expression, Gut Microbiota, and Immune Infiltration in Primary Sclerosing Cholangitis-Inflammatory Bowel Disease: Association of Disease With Bile Acid Pathways

JOURNAL OF CROHNS & COLITIS

IF8.7

2020-02-04

OAAI

Quraishi, Mohammed Nabil; Acharjee, Animesh; Beggs, Andrew D.; Horniblow, Richard; Tselepis, Chris; Gkoutos, Georgios; Ghosh, Subrata; Rossiter, A. E.; Loman, Nicholas; van Schaik, Willem; Withers, David; Walters, Julian R. F.; Hirschfield, Gideon M.; Iqbal, Tariq H.

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Research Directions