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Melanin and Neurotransmitter Signalling Genes Are Differentially Co-Expressed in Growing Feathers of White and Rufous Barn Owls Ducrest, Anne-Lyse; San-Jose, Luis M.; Neuenschwander, Samuel; Schmid-Siegert, Emanuel; Simon, Celine; Pagni, Marco; Iseli, Christian; Richter, Hannes; Guex, Nicolas; Cumer, Tristan; Beaudoing, Emmanuel; Dupasquier, Melanie; Charruau, Pauline; Ducouret, Pauline; Xenarios, Ioannis; Goudet, Jerome; Roulin, Alexandre Share Save
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Integrated multi-omics reveals anaplerotic rewiring in methylmalonyl-CoA mutase deficiency Forny, Patrick; Bonilla, Ximena; Lamparter, David; Shao, Wenguang; Plessl, Tanja; Frei, Caroline; Bingisser, Anna; Goetze, Sandra; van Drogen, Audrey; Harshman, Keith; Pedrioli, Patrick G. A.; Howald, Cedric; Poms, Martin; Traversi, Florian; Burer, Celine; Cherkaoui, Sarah; Morscher, Raphael J.; Simmons, Luke; Forny, Merima; Xenarios, Ioannis; Aebersold, Ruedi; Zamboni, Nicola; Ratsch, Gunnar; Dermitzakis, Emmanouil T.; Wollscheid, Bernd; Baumgartner, Matthias R.; Froese, D. Sean Share Save
Sex-Biased Control of Inflammation and Metabolism by a Mitochondrial Nod-Like Receptor Snaekae, Tiia; Bekkar, Amel; Desponds, Chantal; Prevel, Florence; Claudinot, Stephanie; Isorce, Nathalie; Teixeira, Filipa; Grasset, Coline; Xenarios, Ioannis; Lopez-Mejia, Isabel C.; Fajas, Lluis; Fasel, Nicolas Share Save
External Quality Assessment of SARS-CoV-2 Sequencing: an ESGMD-SSM Pilot Trial across 15 European Laboratories Wegner, Fanny; Roloff, Tim; Huber, Michael; Cordey, Samuel; Ramette, Alban; Gerth, Yannick; Bertelli, Claire; Stange, Madlen; Seth-Smith, Helena M. B.; Mari, Alfredo; Leuzinger, Karoline; Cerutti, Lorenzo; Harshman, Keith; Xenarios, Ioannis; Le Mercier, Philippe; Bittel, Pascal; Neuenschwander, Stefan; Opota, Onya; Fuchs, Jonas; Panning, Marcus; Michel, Charlotte; Hallin, Marie; Demuyser, Thomas; De Mendonca, Ricardo; Savelkoul, Paul; Dingemans, Jozef; van der Veer, Brian; Boers, Stefan A.; Claas, Eric C. J.; Coolen, Jordy P. M.; Melchers, Willem J. G.; Gunell, Marianne; Kallonen, Teemu; Vuorinen, Tytti; Hakanen, Antti J.; Bernhoff, Eva; Hetland, Marit Andrea Klokkhammer; Berman, Hadar Golan; Adar, Sheera; Moran-Gilad, Jacob; Wolf, Dana G.; Leib, Stephen L.; Nolte, Oliver; Kaiser, Laurent; Schmutz, Stefan; Kufner, Verena; Zaheri, Maryam; Trkola, Alexandra; Aamot, Hege Vangstein; Hirsch, Hans H.; Greub, Gilbert; Egli, Adrian Share Save
Quantification of the spread of SARS-CoV-2 variant B.1.1.7 in Switzerland Chen, Chaoran; Nadeau, Sarah Ann; Topolsky, Ivan; Manceau, Marc; Huisman, Jana S.; Jablonski, Kim Philipp; Fuhrmann, Lara; Dreifuss, David; Jahn, Katharina; Beckmann, Christiane; Redondo, Maurice; Noppen, Christoph; Risch, Lorenz; Risch, Martin; Wohlwend, Nadia; Kas, Sinem; Bodmer, Thomas; Roloff, Tim; Stange, Madlen; Egli, Adrian; Eckerle, Isabella; Kaiser, Laurent; Denes, Rebecca; Feldkamp, Mirjam; Nissen, Ina; Santacroce, Natascha; Burcklen, Elodie; Aquino, Catharine; de Gouvea, Andreia Cabral; Moccia, Maria Domenica; Grueter, Simon; Sykes, Timothy; Opitz, Lennart; White, Griffin; Neff, Laura; Popovic, Doris; Patrignani, Andrea; Tracy, Jay; Schlapbach, Ralph; Dermitzakis, Emmanouil T.; Harshman, Keith; Xenarios, Ioannis; Pegeot, Henri; Cerutti, Lorenzo; Penet, Deborah; Blin, Anthony; Elies, Melyssa; Althaus, Christian L.; Beisel, Christian; Beerenwinkel, Niko; Ackermann, Martin; Stadler, Tanja Share Save
Blood virosphere in febrile Tanzanian children Cordey, Samuel; Laubscher, Florian; Hartley, Mary-Anne; Junier, Thomas; Keitel, Kristina; Docquier, Mylene; Guex, Nicolas; Iseli, Christian; Vieille, Gael; Le Mercier, Philippe; Gleizes, Anne; Samaka, Josephine; Mlaganile, Tarsis; Kagoro, Frank; Masimba, John; Said, Zamzam; Temba, Hosiana; Elbanna, Gasser H.; Tapparel, Caroline; Zanella, Marie-Celine; Xenarios, Ioannis; Fellay, Jacques; D'Acremont, Valerie; Kaiser, Laurent Share Save
Unsupervised Analysis of Flow Cytometry Data in a Clinical Setting Captures Cell Diversity and Allows Population Discovery Baumgaertner, Petra; Sankar, Martial; Herrera, Fernanda; Benedetti, Fabrizio; Barras, David; Thierry, Anne-Christine; Dangaj, Denarda; Kandalaft, Lana E.; Coukos, George; Xenarios, Ioannis; Guex, Nicolas; Harari, Alexandre Share Save
Virosaurus A Reference to Explore and Capture Virus Genetic Diversity Gleizes, Anne; Laubscher, Florian; Guex, Nicolas; Iseli, Christian; Junier, Thomas; Cordey, Samuel; Fellay, Jacques; Xenarios, Ioannis; Kaiser, Laurent; Le Mercier, Philippe Share Save
Three-dimensional chromatin interactions remain stable upon CAG/CTG repeat expansion Buendia, Gustavo A. Ruiz; Leleu, Marion; Marzetta, Flavia; Vanzan, Ludovica; Tan, Jennifer Y.; Ythier, Victor; Randall, Emma L.; Marques, Ana C.; Baubec, Tuncay; Murr, Rabih; Xenarios, Ioannis; Dion, Vincent Share Save
Contribution of exome sequencing to the identification of genes involved in the response to clopidogrel in cardiovascular patients Fontana, Pierre; Ibberson, Mark; Stevenson, Brian; Wigger, Leonore; Daali, Youssef; Niknejad, Anne; Mach, Francois; Docquier, Mylene; Xenarios, Ioannis; Cuisset, Thomas; Alessi, Marie-Christine; Reny, Jean-Luc Share Save
Setting the basis of best practices and standards for curation and annotation of logical models in biology-highlights of the [BC]2 2019 CoLoMoTo/SysMod Workshop Niarakis, Anna; Kuiper, Martin; Ostaszewski, Marek; Sheriff, Rahuman S. Malik; Casals-Casas, Cristina; Thieffry, Denis; Freeman, Tom C.; Thomas, Paul; Toure, Vasundra; Noel, Vincent; Stoll, Gautier; Saez-Rodriguez, Julio; Naldi, Aurelien; Oshurko, Eugenia; Xenarios, Ioannis; Soliman, Sylvain; Chaouiya, Claudine; Helikar, Tomas; Calzone, Laurence Share Save
Integrated proteogenomic deep sequencing and analytics accurately identify non-canonical peptides in tumor immunopeptidomes Chong, Chloe; Mueller, Markus; Pak, HuiSong; Harnett, Dermot; Huber, Florian; Grun, Delphine; Leleu, Marion; Auger, Aymeric; Arnaud, Marion; Stevenson, Brian J.; Michaux, Justine; Bilic, Ilija; Hirsekorn, Antje; Calviello, Lorenzo; Simo-Riudalbas, Laia; Planet, Evarist; Lubinski, Jan; Bryskiewicz, Marta; Wiznerowicz, Maciej; Xenarios, Ioannis; Zhang, Lin; Trono, Didier; Harari, Alexandre; Ohler, Uwe; Coukos, George; Bassani-Sternberg, Michal Share Save
Fisetin protects against cardiac cell death through reduction of ROS production and caspases activity Rodius, Sophie; de Klein, Niek; Jeanty, Celine; Sanchez-Iranzo, Hector; Crespo, Isaac; Ibberson, Mark; Xenarios, Ioannis; Dittmar, Gunnar; Mercader, Nadia; Niclou, Simone P.; Azuaje, Francisco Share Save
miR363-3p mediates maintenance of breast cancer stem cells (BCSCs) and predicts resistance to neoadjuvant chemotherapy and disease recurrence Renaud, Stephanie; Stravodimou, Athina; Fiche, Maryse; Xenarios, Ioannis; Valentina, Scabia; Dormoy, Valerian; Galmiche, Marie; Brisken, Cathrin; Delaloye, Jean-Francois; Treboux, Assia; Meuwly, Jean-Yves; Mermod, Nicolas; Zaman, Khalil Share Save
HAMAP as SPARQL rules-A portable annotation pipeline for genomes and proteomes Bolleman, Jerven; de Castro, Edouard; Baratin, Delphine; Gehant, Sebastien; Cuche, Beatrice A.; Auchincloss, Andrea H.; Coudert, Elisabeth; Hulo, Chantal; Masson, Patrick; Pedruzzi, Ivo; Rivoire, Catherine; Xenarios, Ioannis; Redaschi, Nicole; Bridge, Alan Share Save
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