logo
CanyamAI summaries for academic research
language
MobileMobile
  • Phone FeatureWeChat Mini Program
EnglishEnglish
noticeNotice
BlogBlog
delete
arrow
Back
K

Kathryn E. Holt

monash university

92H-index
484Paper Count
4.8WCitation Count
Published Papers 188
Publication Date
logo
The role of whole genome sequencing in antimicrobial susceptibility prediction of bacteria: 2025 update from the EUCAST Subcommittee
errClinical Microbiology and Infection
IF8.5
err2026-05-15
err0
PREAI
errØrjan Samuelsen; Carla López-Causapé; Frank Møller Aarestrup; Valeria Bortolaia; Michael S.M. Brouwer; Rafael Cantón; Adrian Egli; Yonatan H. Grad; Axel Hamprecht; Susanne Haussler; Kathryn E. Holt; Katie L. Hopkins; Benjamin P. Howden; Katy Jeannot; Gunnar Kahlmeter; Claudio U. Köser; Amy J. Mathers; Thierry Naas; Spyros Pournaras; Etienne Ruppé
errShare
errSave
Dormancy regulon reduction was pivotal to the evolution of Mycobacterium tuberculosis
errNature Communications
IF15.7
err2026-04-13
err0
errOAAI
errMatthew Silcocks; James P. Lingford; Chen-Yi Cheung; William J. Jowsey; Rita M. McCall; Christopher D. Rae; Liam K. Harold; David Edwards; Evan Pepper-Tunick; Stephanie L. Neville; Megan J. Maher; Aleix Canalda-Baltrons; Xuling Chang; Phan Vuong Khac Thai; Kathryn E. Holt; Nitin S. Baliga; Gregory M. Cook; Thomas R. Hawn; Nguyen Thuy Thuong Thuong; Maxine Caws; Chris Greening; Christopher A. McDevitt; Jeffery S. Cox; Matthew B. McNeil; Sarah J. Dunstan
errShare
errSave
Exploring the IS-capades of Klebsiella pneumoniae: insertion sequences drive metabolic loss in obscure sublineages
errMicrobial Genomics
IF4
err2026-01-01
err0
PREAI
errVezina, Ben; White, Claire; Cooper, Helena B.; Holt, Kathryn E.; Hawkey, Jane; Wyres, Kelly L.; Lam, Margaret M. C.
errShare
errSave
A metabolic atlas of the Klebsiella pneumoniae species complex reveals lineage-specific metabolism and capacity for intra-species co-operation
errPLOS BIOLOGY
IF7.2
err2025-12-12
err1
PREAI
errVezina, Ben; Cooper, Helena B.; Barlow, Christopher K.; Rethoret-Pasty, Martin; Brisse, Sylvain; Monk, Jonathan M.; Holt, Kathryn E.; Wyres, Kelly L.
errShare
errSave
The acquisition of rmpADC can increase virulence of classical Klebsiella pneumoniae in the absence of other hypervirulence-associated genes
errMBIO
IF4.7
err2025-12-01
err0
PREAI
errSalisbury, Stephen M.; Miner, Taryn A.; Kent, Leslie A.; Lam, Margaret M. C.; Holt, Kathryn E.; Miller, Virginia L.; Walker, Kimberly A.
errShare
errSave
Genomic diversity and antimicrobial resistance of Vibrio cholerae isolates from Africa: a PulseNet Africa initiative using nanopore sequencing to enhance genomic surveillance
errMICROBIAL GENOMICS
IF4
err2025-12-01
err0
PREAI
errFoster-Nyarko, Ebenezer; Able-Thomas, Shola; Adade, Nana Eghele; Adade, Rexford; Anne, Jean Claude Blessa; Antwi, Loretta; Bah, Yaya; Boateng, Gifty; Carleton, Heather; Chaima, David; Chilengi, Roma; Coulibaly, Kalpy Julien; Derra, Firehiwot Abera; Didon, Dwayne; Dimuna, Cheelo; Dosso, Mireille; Drammeh, Momodou M.; Ferjani, Sana; Holt, Kathryn E.; Jatta, Rohey; Kalule, John Bosco; Kanteh, Abdoulie; Kette, Hortense Faye; Khan, Dam; Kouadio, N'da Kouame Nazaire; Lee, Christine; Mantina, Hamakwa; Mulenga, Gillan; Mwaba, John; Nyang, Fatou; Owusu-Okyere, Godfred; Rowland, Jessica; Seck, Aissatou; Sesay, Abdul Karim; Smith, Anthony; Smith, Peyton; Soma, Djifahamai; Tau, Nomsa; Tchuinte, Pierrette Landrie Simo; Tientcheu, Peggy- Estelle Maguiagueu; Sokoni, Chalwe; Vakou, Sabine N'dri; Vubil, Delfino
errShare
errSave
Microbiota and resistome dynamics in untreated and treated wastewater: A ten-month study leveraging RNA-probe capture and subspecies-level metagenomics
errJournal of Hazardous Materials
IF11.3
err2025-11-20
err0
errOAAI
errKenneth Lindstedt; Adriana Osińska; Ahmed Bargheet; Henning Sørum; Ryan R. Wick; Kathryn E. Holt; Veronika Kuchařová Pettersen; Arnfinn Sundsfjord; Yngvild Wasteson
errShare
errSave
Microbial genomics for antimicrobial resistance ecology and action
errNature Reviews Genetics
IF52
err2025-11-03
err0
PREAI
errKathryn E. Holt
errShare
errSave
Typhi Mykrobe: fast and accurate lineage identification and antimicrobial resistance genotyping directly from sequence reads for the typhoid fever agent Salmonella Typhi
errGenome Medicine
IF11.2
err2025-10-24
err0
errOAAI
errDanielle J. Ingle; Jane Hawkey; Martin Hunt; Zamin Iqbal; Jacqueline A. Keane; Ayorinde O. Afolayan; Niyaz Ahmed; Saadia Andleeb; Philip M. Ashton; Isaac I. Bogoch; Megan E. Carey; Marie Anne Chattaway; John A. Crump; Paula Diaz Guevara; Benjamin P. Howden; Hidemasa Izumiya; Jobin John Jacob; Louise M. Judd; Arti Kapil; Karen H. Keddy; Justin Y. Kim; Myron M. Levine; Masatomo Morita; Satheesh Nair; Sophie Octavia; Iruka N. Okeke; Precious E. Osadebamwen; Sadia Isfat Ara Rahman; Assaf Rokney; David A. Rasko; Varun Shamanna; Michael J. Sikorski; Anthony M. Smith; Gabriel T. Sunmonu; Kaitlin A. Tagg; Ryan R. Wick; Zoe A. Dyson; Kathryn E. Holt
errShare
errSave
Enhanced virulence and stress tolerance are signatures of epidemiologically successful Shigella sonnei
errNature Communications
IF15.7
err2025-10-09
err0
errOAAI
errSydney L. Miles; Dilys Santillo; Hannah Painter; Kathryn Wright; Vincenzo Torraca; Ana T. López-Jiménez; Mollie Virgo; Xosé M. Matanza; Abigail Clements; Claire Jenkins; Stephen Baker; Kate S. Baker; David Cisneros; Andrea Puhar; Vanessa Sancho-Shimizu; Kathryn E. Holt; Serge Mostowy
errShare
errSave
The TyphiNET data visualisation dashboard: unlocking Salmonella Typhi genomics data to support public health
errGENOME MEDICINE
IF11.2
err2025-05-09
err0
errOAAI
errDyson, Zoe A.; Cerdeira, Louise; Sharma, Vandana; Carey, Megan E.; Holt, Kathryn E.
errShare
errSave
A genome-wide One Health study of Klebsiella pneumoniae in Norway reveals overlapping populations but few recent transmission events across reservoirs
errGENOME MEDICINE
IF11.2
err2025-04-28
err0
errOAAI
errHetland, Marit A. K.; Winkler, Mia A.; Kaspersen, Hakon P.; Hakonsholm, Fredrik; Bakksjo, Ragna-Johanne; Bernhoff, Eva; Delgado-Blas, Jose F.; Brisse, Sylvain; Correia, Annapaula; Fostervold, Aasmund; Lam, Margaret M. C.; Lunestad, Bjorn-Tore; Marathe, Nachiket P.; Raffelsberger, Niclas; Samuelsen, Orjan; Sunde, Marianne; Sundsfjord, Arnfinn; Urdahl, Anne Margrete; Wick, Ryan R.; Lohr, Iren H.; Holt, Kathryn E.
errShare
errSave
Genomic and functional analysis of rmp locus variants in Klebsiella pneumoniae
errGENOME MEDICINE
IF11.2
err2025-04-09
err0
errOAAI
errLam, Margaret M. C.; Salisbury, Stephen M.; Treat, Logan P.; Wick, Ryan R.; Judd, Louise M.; Wyres, Kelly L.; Brisse, Sylvain; Walker, Kimberly A.; Miller, Virginia L.; Holt, Kathryn E.
errShare
errSave
Targeted sequencing of Enterobacterales bacteria using CRISPR-Cas9 enrichment and Oxford Nanopore Technologies
errMSYSTEMS
IF4.6
err2025-02-18
err0
errOAAI
errCottingham, Hugh; Judd, Louise M.; Wisniewski, Jessica A.; Wick, Ryan R.; Stanton, Thomas D.; Vezina, Ben; Macesic, Nenad; Peleg, Anton Y.; Okeke, Iruka N.; Holt, Kathryn E.; Hawkey, Jane
errShare
errSave
Genomic data sharing: you don't know what you've got (till it's gone)
errNATURE REVIEWS GENETICS
IF52
err2025-02-12
err0
PREAI
errHolt, Kathryn E.
errShare
errSave
Shigella sonnei: epidemiology, evolution, pathogenesis, resistance and host interactions
errNATURE REVIEWS MICROBIOLOGY
IF103.3
err2024-11-27
err0
PREAI
errScott, Timothy A.; Baker, Kate S.; Trotter, Caroline; Jenkins, Claire; Mostowy, Serge; Hawkey, Jane; Schmidt, Hayden; Holt, Kathryn E.; Thomson, Nicholas R.; Baker, Stephen
errShare
errSave
Wild-Type Domestication: Loss of Intrinsic Metabolic Traits Concealed by Culture in Rich Media
errMICROBIAL ECOLOGY
IF4
err2024-11-21
err0
errOAAI
errVezina, Ben; Cooper, Helena B.; Wisniewski, Jessica A.; Parker, Matthew H.; Jenney, Adam W. J.; Holt, Kathryn E.; Wyres, Kelly L.
errShare
errSave
EnteroBase in 2025: exploring the genomic epidemiology of bacterial pathogens
errNUCLEIC ACIDS RESEARCH
IF13.1
err2024-10-23
err1
errOAAI
errDyer, Nigel P.; Paeuker, Birgitta; Baxter, Laura; Gupta, Anshul; Bunk, Boyke; Overmann, Joerg; Diricks, Margo; Dreyer, Viola; Niemann, Stefan; Holt, Kathryn E.; Rahman, Mohammed; Brown, Paul E.; Stark, Richard; Zhou, Zhemin; Ott, Sascha; Nuebel, Ulrich
errShare
errSave
Diversity, functional classification and genotyping of SHV /3-lactamases in Klebsiella pneumoniae
errMICROBIAL GENOMICS
IF4
err2024-10-21
err2
errOAAI
errTsang, Kara K.; Lam, Margaret M. C.; Wick, Ryan R.; Wyres, Kelly L.; Bachman, Michael; Baker, Stephen; Barry, Katherine; Brisse, Sylvain; Campino, Susana; Chiaverini, Alexandra; Cirillo, Daniela Maria; Clark, Taane; Corander, Jukka; Corbella, Marta; Cornacchia, Alessandra; Cuenod, Aline; D'Alterio, Nicola; Di Marco, Federico; Donado-Godoy, Pilar; Egli, Adrian; Farzana, Refath; Feil, Edward J.; Fostervold, Aasmund; Gorrie, Claire L.; Hassan, Brekhna; Hetland, Marit Andrea Klokkhammer; Hoa, Le Nguyen Minh; Hoi, Le Thi; Howden, Benjamin; Ikhimiukor, Odion O.; Jenney, Adam W. J.; Kaspersen, Hakon; Khokhar, Fahad; Leangapichart, Thongpan; Ligowska-Marzeta, Malgorzata; Lohr, Iren Hoyland; Long, Scott W.; Mathers, Amy J.; Mcarthur, Andrew G.; Nagaraj, Geetha; Oaikhena, Anderson O.; Okeke, Iruka N.; Perdigao, Joao; Parikh, Hardik; Pham, My H.; Pomilio, Francesco; Raffelsberger, Niclas; Rakotondrasoa, Andriniaina; Kumar, K. L. Ravi; Roberts, Leah W.; Rodrigues, Carla; Samuelsen, Orjan; Sands, Kirsty; Sassera, Davide; Seth-Smith, Helena; Shamanna, Varun; Sherry, Norelle L.; Sia, Sonia; Spadar, Anton; Stoesser, Nicole; Sunde, Marianne; Sundsfjord, Arnfinn; Thach, Pham Ngoc; Thomson, Nicholas R.; Thorpe, Harry A.; Torok, M. Estee; Trang, Van Dinh; Trung, Nguyen Vu; Vornhagen, Jay; Walsh, Timothy; Warne, Ben; Wilson, Hayley; Wright, Gerard D.; Holt, Kathryn E.
errShare
errSave
Recent advances in modelling Shigela infection
errTRENDS IN MICROBIOLOGY
IF14.9
err2024-09-01
err1
errOAAI
errMiles, Sydney L.; Holt, Kathryn E.; Mostowy, Serge
errShare
errSave

Research Directions

No research directions
Co-authors
Cooperation Journals
Z
Zulfiqar A Bhutta
H-index: 214 · Papers: 1.9K
J
Julian Parkhill
H-index: 177 · Papers: 1.1K
E
Edward C. Holmes
H-index: 165 · Papers: 1.2K
J
Jillian F. Banfield
H-index: 154 · Papers: 935
G
Gordon Dougan
H-index: 144 · Papers: 952
View more