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SenNet recommendations for detecting senescent cells in different tissues Suryadevara, Vidyani; Hudgins, Adam D.; Rajesh, Adarsh; Pappalardo, Alberto; Karpova, Alla; Dey, Amit K.; Hertzel, Ann; Agudelo, Anthony; Rocha, Azucena; Soygur, Bikem; Schilling, Birgit; Carver, Chase M.; Aguayo-Mazzucato, Cristina; Baker, Darren J.; Bernlohr, David A.; Jurk, Diana; Mangarova, Dilyana B.; Quardokus, Ellen M.; Enninga, Elizabeth Ann L.; Schmidt, Elizabeth L.; Chen, Feng; Duncan, Francesca E.; Cambuli, Francesco; Kaur, Gagandeep; Kuchel, George A.; Lee, Gung; Daldrup-Link, Heike E.; Martini, Helene; Phatnani, Hemali; Al-Naggar, Iman M.; Rahman, Irfan; Nie, Jia; Passos, Joao F.; Silverstein, Jonathan C.; Campisi, Judith; Wang, Julia; Iwasaki, Kanako; Barbosa, Karina; Metis, Kay; Nernekli, Kerem; Niedernhofer, Laura J.; Ding, Li; Wang, Lichao; Adams, Lisa C.; Ruiyang, Liu; Doolittle, Madison L.; Teneche, Marcos G.; Schafer, Marissa J.; Xu, Ming; Hajipour, Mohammadjavad; Boroumand, Mozhgan; Basisty, Nathan; Sloan, Nicholas; Slavov, Nikolai; Kuksenko, Olena; Robson, Paul; Gomez, Paul T.; Vasilikos, Periklis; Adams, Peter D.; Carapeto, Priscila; Zhu, Quan; Ramasamy, Ramalakshmi; Perez-Lorenzo, Rolando; Fan, Rong; Dong, Runze; Montgomery, Ruth R.; Shaikh, Sadiya; Vickovic, Sanja; Yin, Shanshan; Kang, Shoukai; Suvakov, Sonja; Khosla, Sundeep; Garovic, Vesna D.; Menon, Vilas; Xu, Yanxin; Song, Yizhe; Suh, Yousin; Dou, Zhixun; Neretti, Nicola Share Save
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Three-dimensional spatial transcriptomics uncovers cell type localizations in the human rheumatoid arthritis synovium Vickovic, Sanja; Schapiro, Denis; Carlberg, Konstantin; Lotstedt, Britta; Larsson, Ludvig; Hildebrandt, Franziska; Korotkova, Marina; Hensvold, Aase H.; Catrina, Anca, I; Sorger, Peter K.; Malmstrom, Vivianne; Regev, Aviv; Stahl, Patrik L. Share Save
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Deep learning and alignment of spatially resolved single-cell transcriptomes with Tangram Biancalani, Tommaso; Scalia, Gabriele; Buffoni, Lorenzo; Avasthi, Raghav; Lu, Ziqing; Sanger, Aman; Tokcan, Neriman; Vanderburg, Charles R.; Segerstolpe, Asa; Zhang, Meng; Avraham-Davidi, Inbal; Vickovic, Sanja; Nitzan, Mor; Ma, Sai; Subramanian, Ayshwarya; Lipinski, Michal; Buenrostro, Jason; Brown, Nik Bear; Fanelli, Duccio; Zhuang, Xiaowei; Macosko, Evan Z.; Regev, Aviv Share Save
High-definition spatial transcriptomics for in situ tissue profiling Vickovic, Sanja; Eraslan, Gokcen; Salmen, Fredrik; Klughammer, Johanna; Stenbeck, Linnea; Schapiro, Denis; Aijo, Tarmo; Bonneau, Richard; Bergenstrahle, Ludvig; Navarro, Jose Fernandez; Gould, Joshua; Griffin, Gabriel K.; Borg, Ake; Ronaghi, Mostafa; Frisen, Jonas; Lundeberg, Joakim; Regev, Aviv; Stahl, Patrik L. Share Save
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Spatial maps of prostate cancer transcriptomes reveal an unexplored landscape of heterogeneity Berglund, Emelie; Maaskola, Jonas; Schultz, Niklas; Friedrich, Stefanie; Marklund, Maja; Bergenstrahle, Joseph; Tarish, Firas; Tanoglidi, Anna; Vickovic, Sanja; Larsson, Ludvig; Salmen, Fredrik; Ogris, Christoph; Wallenborg, Karolina; Lagergren, Jens; Stahl, Patrik; Sonnhammer, Erik; Helleday, Thomas; Lundeberg, Joakim Share Save
Spatial detection of fetal marker genes expressed at low level in adult human heart tissue Asp, Michaela; Salmen, Fredrik; Stahl, Patrik L.; Vickovic, Sanja; Felldin, Ulrika; Lofling, Marie; Navarro, Jose Fernandez; Maaskola, Jonas; Eriksson, Maria J.; Persson, Bengt; Corbascio, Matthias; Persson, Hans; Linde, Cecilia; Lundeberg, Joakim Share Save
Spatially resolved transcriptome profiling in model plant species Giacomello, Stefania; Salmen, Fredrik; Terebieniec, Barbara K.; Vickovic, Sanja; Navarro, Jose Fernandez; Alexeyenko, Andrey; Reimegard, Johan; McKee, Lauren S.; Mannapperuma, Chanaka; Bulone, Vincent; Stahl, Patrik L.; Sundstrom, Jens F.; Street, Nathaniel R.; Lundeberg, Joakim Share Save
Massive and parallel expression profiling using microarrayed single-cell sequencing Vickovic, Sanja; Stahl, Patrik L.; Salmen, Fredrik; Giatrellis, Sarantis; Westholm, Jakub Orzechowski; Mollbrink, Annelie; Navarro, Jose Fernandez; Custodio, Joaquin; Bienko, Magda; Sutton, Lesley-Ann; Rosenquist, Richard; Frisen, Jonas; Lundeberg, Joakim Share Save
Single cell analysis of cancer cells using an improved RT-MLPA method has potential for cancer diagnosis and monitoring Kvastad, L.; Solnestam, B. Werne; Johansson, E.; Nygren, A. O.; Laddach, N.; Sahlen, P.; Vickovic, S.; Bendigtsen, Schirmer C.; Aaserud, M.; Floer, L.; Borgen, E.; Schwind, C.; Himmelreich, R.; Latta, D.; Lundeberg, J. Share Save
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