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M

Muzlifah Haniffa

wellcome genome campus

78H-index
306Paper Count
3.1WCitation Count
Published Papers 104
Publication Date
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TarDis: Achieving robust and structured disentanglement of multiple covariates
errCell Systems
IF7.7
err2026-04-08
err0
errOAAI
errKemal Inecik; Aleyna Kara; Antony Rose; Muzlifah Haniffa; Fabian J. Theis
errShare
errSave
Targeting non-canonical NF-κB signalling in CYLD cutaneous syndrome by selective inhibition of IκB kinase alpha
errBritish Journal of Dermatology
IF9.6
err2026-03-04
err0
errOAAI
errKirsty Hodgson; Joseph Inns; Gary Reynolds; Emily Stephenson; Andrew Paul; Naomi Sinclair; Giacomo Berretta; Christopher Lawson; Andrew Michael Frey; Iglika Ivanova; Eva Adam; Christopher J Lord; Simon Cockell; Jonathan Coxhead; Nikoletta Nagy; David Adams; Marta Szell; Matthias Trost; Muzlifah Haniffa; Simon P Mackay; Neil Perkins; Neil Rajan; null
errShare
errSave
A single-cell and spatial genomics atlas of human skin fibroblasts reveals shared disease-related fibroblast subtypes across tissues
errNature Immunology
IF27.6
err2025-09-24
err0
errOAAI
errLloyd Steele; Bayanne Olabi; Kenny Roberts; Pavel V. Mazin; Simon Koplev; Catherine Tudor; Benjamin Rumney; Chloe Admane; Treasa Jiang; Donovan Correa-Gallegos; Keerthi Priya Chakala; Aljes Binkevich; Nusayhah Hudaa Gopee; Alexander Predeus; Martin Prete; Elena Winheim; Karl Annusver; Agnes Forsthuber; Luc Francis; Sophie Frech; Clarisse Ganier; Thomas Layton; Yingzi Liu; Hao Yuan; Johann E. Gudjonsson; Beate M. Lichtenberger; Satveer Mahil; Jagdeep Nanchahal; Edel A. O’Toole; Maksim V. Plikus; Yuval Rinkevich; Emanuel Rognoni; Catherine H. Smith; Sarah A. Teichmann; Maria Kasper; April R. Foster; Mohammad Lotfollahi; Muzlifah Haniffa
errShare
errSave
Publisher Correction: TCF1 and LEF1 promote B-1a cell homeostasis and regulatory function
errNature
IF48.5
err2025-09-16
err0
errOAAI
errQian Shen; Hao Wang; Jonathan A. Roco; Xiangpeng Meng; Marita Bosticardo; Marie Hodges; Michael Battaglia; Zhi-Ping Feng; Benjamin James Talks; Jason Powell; Vijaya Baskar Mahalingam Shanmugiah; Julia Chu; Najib M. Rahman; Alguili Elsheikh; Probir Chakravarty; Amalie Grenov; Max Emmerich; Ottavia M. Delmonte; Alexandra F. Freeman; Michael D. Keller; Brahim Belaid; Ilenia Papa; James C. Lee; Pablo F. Cañete; Paula Gonzalez-Figueroa; Yaoyuan Zhang; Hai-Hui Xue; Samra Turajlic; Luigi D. Notarangelo; Muzlifah Haniffa; Lee Ann Garrett-Sinha; Helen M. Parry; Nikolaos I. Kanellakis; Carola G. Vinuesa
errShare
errSave
Sensory neurons shape local macrophage identity via TGF-β signaling
errImmunity
IF26.3
err2025-09-05
err0
errOAAI
errJulia Kolter; Clarissa-Laura Döring; Samah Sarout; Sebastian Baasch; Lloyd Steele; Reem Alsumati; Gabriel V. Lucena Silva; Conceição E. Aníbal Silva; Isadora Marques Paiva; Zohreh Mansoori Moghadam; Vitka Gres; Florens Lohrmann; Philipp Aktories; Theresa Buchegger; Mitchell Bijnen; Layal Doumard; Benjamin Voisin; Christelle Le Foll; Nico Lachmann; Melanie Greter; Katrin Kierdorf; Muzlifah Haniffa; Thiago M. Cunha; Vincent Flacher; Philipp Henneke
errShare
errSave
TCF1 and LEF1 promote B-1a cell homeostasis and regulatory function
errNature
IF48.5
err2025-08-20
err0
errOAAI
errQian Shen; Hao Wang; Jonathan A. Roco; Xiangpeng Meng; Marita Bosticardo; Marie Hodges; Michael Battaglia; Zhi-Ping Feng; Benjamin James Talks; Jason Powell; Vijaya Baskar Mahalingam Shanmugiah; Julia Chu; Najib M. Rahman; Alguili Elsheikh; Probir Chakravarty; Amalie Grenov; Max Emmerich; Ottavia M. Delmonte; Alexandra F. Freeman; Michael D. Keller; Brahim Belaid; Ilenia Papa; James C. Lee; Pablo F. Cañete; Paula Gonzalez-Figueroa; Yaoyuan Zhang; Hai-Hui Xue; Samra Turajlic; Luigi D. Notarangelo; Muzlifah Haniffa; Lee Ann Garrett-Sinha; Helen M. Parry; Nikolaos I. Kanellakis; Carola G. Vinuesa
errShare
errSave
Single-cell transcriptomics identifies chondrocyte differentiation dynamics in vivo and in vitro
errDevelopmental Cell
IF8.7
err2025-07-24
err0
errOAAI
errJohn E.G. Lawrence; Steven Woods; Kenny Roberts; Dinithi Sumanaweera; Petra Balogh; Tong Li; Alexander V. Predeus; Peng He; Krzysztof Polanski; Elena Prigmore; Elizabeth Tuck; Lira Mamanova; Di Zhou; Simone Webb; Laura Jardine; Xiaoling He; Roger A. Barker; Muzlifah Haniffa; Adrienne M. Flanagan; Matthew J. Young; Sam Behjati; Omer Bayraktar; Susan J. Kimber; Sarah A. Teichmann
errShare
errSave
Temporal multi-omics analysis of COVID-19 in end-stage kidney disease
errCell Genomics
IF9
err2025-06-17
err0
errOAAI
errEmily Stephenson; Erin Macdonald-Dunlop; Lisa M. Dratva; Rik G.H. Lindeboom; Zewen Kelvin Tuong; Win Min Tun; Lorenz Kretschmer; Norzawani B. Buang; Stephane Ballereau; Mia Cabantaus; Ana Peñalver; Elena Prigmore; John R. Ferdinand; Benjamin J. Stewart; Jack Gisby; Talat H. Malik; Candice L. Clarke; Nicholas Medjeral-Thomas; Maria Prendecki; Stephen McAdoo; Anais Portet; Michelle Willicombe; Eleanor Sandhu; Matthew C. Pickering; Marina Botto; Sarah A. Teichmann; Muzlifah Haniffa; Menna R. Clatworthy; David C. Thomas; James E. Peters
errShare
errSave
Cutaneous T cell lymphoma atlas reveals malignant TH2 cells supported by a B cell-rich tumor microenvironment (vol 25, pg 2320, 2024)
errNATURE IMMUNOLOGY
IF27.6
err2024-12-02
err0
errOAAI
errLi, Ruoyan; Strobl, Johanna; Poyner, Elizabeth F. M.; Balbaa, Aya; Torabi, Fereshteh; Mazin, Pavel V.; Chipampe, Nana-Jane; Stephenson, Emily; Ramirez-Suastegi, Ciro; Shanmugiah, Vijaya Baskar Mahalingam; Gardner, Louis; Olabi, Bayanne; Coulthard, Rowen; Botting, Rachel A.; Zila, Nina; Prigmore, Elena; Gopee, Nusayhah H.; Chroscik, Marta A.; Kritikaki, Efpraxia; Engelbert, Justin; Goh, Issac; Chan, Hon Man; Johnson, Harriet F.; Ellis, Jasmine; Rowe, Victoria; Tun, Win; Reynolds, Gary; Yang, Dexin; Foster, April Rose; Gambardella, Laure; Winheim, Elena; Admane, Chloe; Rumney, Benjamin; Steele, Lloyd; Jardine, Laura; Nenonen, Julia; Pickard, Keir; Lumley, Jennifer; Hampton, Philip; Hu, Simeng; Liu, Fengjie; Liu, Xiangjun; Horsfall, David; Basurto-Lozada, Daniela; Grimble, Louise; Bacon, Chris M.; Weatherhead, Sophie C.; Brauner, Hanna; Wang, Yang; Bai, Fan; Reynolds, Nick J.; Allen, Judith E.; Jonak, Constanze; Brunner, Patrick M.; Teichmann, Sarah A.; Haniffa, Muzlifah
errShare
errSave
Decoding the human prenatal immune system with single-cell multi-omics
errNATURE REVIEWS IMMUNOLOGY
IF60.9
err2024-10-31
err0
PREAI
errHaniffa, Muzlifah; Maartens, Aidan; Winheim, Elena; Jardine, Laura
errShare
errSave
Early human lung immune cell development and its role in epithelial cell fate
errEUROPEAN RESPIRATORY JOURNAL
IF21
err2024-10-30
err0
errOAAI
errBarnes, Josephine; Yoshida, Masahiro; He, Peng; Worlock, Kaylee; Lindeboom, Rik; Suo, Chenqu; Pett, J. Patrick; Wilbrey-Clark, Anna; Dann, Emma; Mamanova, Lira; Richardson, Laura; Polanski, Krzysztof; Pennycuick, Adam; Allen-Hytinnen, Jessica; Herczeg, Ivan; Arzili, Romina; Hynds, Robert; Teixeira, Vitor; Haniffa, Muzlifah; Lim, Kyungtae; Sun, Dawei; Rawlins, Emma; Oliver, Amanda; Lyons, Paul; Marioni, John; Ruhrberg, Christiana; Tuong, Zewen; Clatworthy, Menna; Reading, James; Janes, Sam; Teichmann, Sarah; Meyer, Kerstin; Nikolic, Marko
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errSave
Human SARS-CoV-2 challenge uncovers differences in local and systemic cellular responses associated with protection from infection and distinct infection states
errEUROPEAN RESPIRATORY JOURNAL
IF21
err2024-10-30
err0
PREAI
errWorlock, Kaylee; Lindeboom, Rik G. H.; Dratva, Lisa; Yoshida, Masahiro; Scobie, David; Wagstaffe, Helen; Richardson, Laura; Wilbrey-Clark, Anna; Barnes, Josephine; Mehta, Puja; Kretschmer, Lorenz; Polanski, Krzysztof; Allen-Hyttinen, Jessica; Sumanaweera, Dinithi; Boccacino, Jacqueline M.; Sungnak, Waradon; Elmentaite, Rasa; Huang, Ni; Mamanova, Lira; Kapuge, Rakeshlal; Bolt, Liam; Prigmore, Elena; Kilingley, Ben; Kalinova, Mariya; Mayer, Maria; Boyers, Alison; Mann, Alex; Swadling, Leo; Woodall, Maximillian; Ellis, Samuel; Smith, Claire M.; Teixeira, Vitor; Janes, Sam M.; Chambers, Rachel C.; Haniffa, Muzlifah; Catchpole, Andrew; Heyderman, Rob; Noursadeghi, Mahdad; Chain, Benny; Mayer, Andreas; Meyer, Kerstin B.; Chiu, Christopher; Teichmann, Sarah A.; Nikolic, Marko Z.
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errSave
of Mapping Human Immunity and the Education of Waldeyer's Ring
errannual review of genetics
IF7.9
err2024-08-27
err0
PREAI
errTalks, Benjamin J.; Mather, Michael W.; Chahal, Manisha; Coates, Matthew; Clatworthy, Menna R.; Haniffa, Muzlifah
errShare
errSave
WebAtlas pipeline for integrated single-cell and spatial transcriptomic data
errNATURE METHODS
IF32.1
err2024-08-19
err3
PREAI
errLi, Tong; Horsfall, David; Basurto-Lozada, Daniela; Roberts, Kenny; Prete, Martin; Lawrence, John E. G.; He, Peng; Tuck, Elisabeth; Moore, Josh; Yoldas, Aybuke Kupcu; Babalola, Kolawole; Hartley, Matthew; Ghazanfar, Shila; Teichmann, Sarah A.; Haniffa, Muzlifah; Bayraktar, Omer Ali
errShare
errSave
Multi-modal generative modeling for joint analysis of single-cell T cell receptor and gene expression data
errNATURE COMMUNICATIONS
IF15.7
err2024-07-03
err4
errOAAI
errDrost, Felix; An, Yang; Bonafonte-Pardas, Irene; Dratva, Lisa M.; Lindeboom, Rik G. H.; Haniffa, Muzlifah; Teichmann, Sarah A.; Theis, Fabian; Lotfollahi, Mohammad; Schubert, Benjamin
errShare
errSave
High-dimensional single-cell analysis of human natural killer cell heterogeneity
errNATURE IMMUNOLOGY
IF27.6
err2024-07-02
err22
errOAAI
errRebuffet, Lucas; Melsen, Janine E.; Escaliere, Bertrand; Basurto-Lozada, Daniela; Bhandoola, Avinash; Bjorkstrom, Niklas K.; Bryceson, Yenan T.; Castriconi, Roberta; Cichocki, Frank; Colonna, Marco; Davis, Daniel M.; Diefenbach, Andreas; Ding, Yi; Haniffa, Muzlifah; Horowitz, Amir; Lanier, Lewis L.; Malmberg, Karl-Johan; Miller, Jeffrey S.; Moretta, Lorenzo; Narni-Mancinelli, Emilie; O'Neill, Luke A. J.; Romagnani, Chiara; Ryan, Dylan G.; Sivori, Simona; Sun, Dan; Vagne, Constance; Vivier, Eric
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errSave
Inflammatory memory in psoriasis: From remission to recurrence
errJOURNAL OF ALLERGY AND CLINICAL IMMUNOLOGY
IF11.2
err2024-07-01
err3
errOAAI
errFrancis, Luc; Capon, Francesca; Smith, Catherine H.; Haniffa, Muzlifah; Mahil, Satveer K.
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errSave
Benchmarking a human pluripotent stem cell-derived hair-bearing skin organoid model to prenatal skin
errBRITISH JOURNAL OF DERMATOLOGY
IF9.6
err2024-05-17
err0
PREAI
errGambardella, Laure; Torabi, Feri; Foster, April; Admane, Chloe; Winheim, Elena; Gopee, Nusayhah Hudaa; Olabi, Bayanne; Rowe, Vicky; Sumanaweera, Dinithi; Le, Phuong Ahn; Serdy, Sara; Kim, Jin; Deakin, Cici; Lee, Jiyoon; Stephenson, Emily; Botting, Rachel; Koehler, Karl; Teichmann, Sarah; Haniffa, Muzlifah
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errSave
Macrophages enhance angiogenesis in an induced pluripotent stem cell-derived skin organoid model
errBRITISH JOURNAL OF DERMATOLOGY
IF9.6
err2024-05-17
err0
PREAI
errFoster, April Rose; Admane, Chloe; Adao, Diana; Torabi, Fereshteh; Gopee, Nusayhah Hudaa; Olabi, Bayanne; Winheim, Elena; Rowe, Victoria; Le, Phuong Ahn; Serdy, Sara; Kim, Jin; Deakin, Cici; Lee, Jiyoon; Li, Tong; Koehler, Karl; Gambardella, Laure; Haniffa, Muzlifah
errShare
errSave
Targeted action to increase inclusion at the Wellcome Sanger Institute
errELIFE
IF0
err2024-02-21
err0
errOAAI
errAhmed, Saher; Adams, David J.; Haniffa, Muzlifah; Maartens, Aidan; Arruda, Maria Augusta
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errSave

Research Directions

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Co-authors
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