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Nicholas R. Thomson

wellcome sanger institute

96H-index
569Paper Count
4.4WCitation Count
Published Papers 268
Publication Date
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Profiling the gut resistome to unlock antimicrobial resistance biology and inform clinical risk
errNature Communications
IF15.7
err2026-07-15
err0
errOAAI
errZ. Chaudhry; A. Cazares; N. Thomson; RS Heyderman
errShare
errSave
Phylo-Plex: a phylogenetically informed, low-cost amplicon sequencing platform for deployable high-resolution genomic epidemiology
errNature Communications
IF15.7
err2026-07-09
err0
errOAAI
errMathew A. Beale; Vignesh Shetty; Kirsty E. Ambridge; George Lacey; Sam Dougan; William Roberts-Sengier; Beth Sampher; Florent Lassalle; Matthew J. Dorman; Mahlape P. Mahlangu; Johanna M. E. Venter; Bianca Da Costa Dias; Martha Chipinduro; Tendai M. Washaya; Luanne Rodgers; Beauty Makamure; Ethel Dauya; Michael Marks; Etienne E. Müller; Rashida A. Ferrand; Nicholas R. Thomson
errShare
errSave
Membrane protein solubilization and structure determination using de novo–designed proteins
errScience
IF45.8
err2026-07-02
err0
PREAI
errLjubica Mihaljević; David E. Kim; Pooja D. Bandawane; Helen E. Eisenach; Andrew J. Borst; Alexis Courbet; Connor Weidle; Kenneth D. Carr; Everton Bettin; Qiushi Liu; Aldo T. Trejos; Sagardip Majumder; Surabhi Kokane; Alexander Stevens; Edin Muratspahić; Thomas Schlichthaerle; Marc Expòsit; Xinting Li; Mila Lamb; Analisa Nicole Azcárraga Murray; Rashmi Ravichandran; Elizabeth C. Williams; Shuyuan Hu; Lynda Stuart; Linda Grillová; Nicholas R. Thomson; Michael Landreh; Pengxiang Chang; Lorenzo Giacani; Melissa J. Caimano; Kelly L. Hawley; Neil P. King; David Baker
errShare
errSave
Genomic evolution and climate related drivers of cholera surges in Dhaka Bangladesh between 1996 and 2024
errCommunications Medicine
IF6.3
err2026-05-22
err0
errOAAI
errMd Mamun Monir; Khalilur Rahman; Mohammad Tarequl Islam; Marzia Sultana; Wali Ullah; Sardar Muhammad Osail; Md Alimul Islam Ridoy; Abdullah Al-Mamun; Shirajum Monira; Kimberley D. Seed; Andrew Camilli; Carla Mavian; Nicholas Thomson; Rita R. Colwell; ASG Faruque; Tahmeed Ahmed; Munirul Alam
errShare
errSave
CRISPR-based environmental detection of Burkholderia pseudomallei identifies sanitation gaps and melioidosis risk in northeast Thailand
errNature Communications
IF15.7
err2026-05-15
err0
errOAAI
errSukritpong Pakdeerat; Chalita Chomkatekaew; Phumrapee Boonklang; Raiwin Mothong; Maturada Patchsung; Arin Wongprommoon; Kesorn Angchagun; Yaowaret Dokket; Areeya Faosap; Gumphol Wongsuwan; Premjit Amornchai; Vanaporn Wuthiekanun; Jiramate Changklom; Suwatthiya Siriboon; Parinya Chamnan; Sharon J. Peacock; Julian Parkhill; Jukka Corander; Nicholas PJ Day; Nicholas R. Thomson; Chayasith Uttamapinant; Somsakul Pop Wongpalee; Claire Chewapreecha
errShare
errSave
Eco-evolutionary responses to plasmid-dependent phage constrain the spread of multidrug resistance plasmids
errThe ISME Journal
IF0
err2026-05-08
err0
errOAAI
errDaniel Cazares; Eliza Rayner; Adrian Cazares; Wendy Figueroa; David Goulding; Samuel T E Greenrod; Adam J Mulkern; Michelle Y Y Yin; Tao He; Nick Thomson; Michael A Brockhurst; R Craig MacLean; null
errShare
errSave
Evolution of pandemic cholera at its global source
errNature
IF48.5
err2026-04-01
err0
errOAAI
errAmber Barton; Mokibul Hassan Afrad; Alyce Taylor-Brown; Nisha Singh; Chetan Thakur; Taufiqul Islam; Sadia Isfat Ara Rahman; Marjahan Akhtar; Yasmin Ara Begum; Taufiqur Rahman Bhuiyan; Ashraful Islam Khan; Neelam Taneja; Nicholas R. Thomson; Firdausi Qadri
errShare
errSave
Aeromonas in South Asia: genomic insights into an environmental pathogen and reservoir of antimicrobial resistance
errNature Communications
IF15.7
err2026-01-31
err0
errOAAI
errNisha Singh; Rahma O. Golicha; Chetan Thakur; Mathew A. Beale; Matthew J. Dorman; Adrian Cazares; Alyce Taylor-Brown; Fatema-Tuz Johura; Mahamud-ur Rashid; Shirajum Monira; Fatema Zohura; Tahmina Parvin; Sazzadul Islam Bhuiyan; Marzia Sultana; Balvinder Mohan; Daryl Domman; Christine Marie George; Samuel Kariuki; Munirul Alam; Neelam Taneja; Nicholas R. Thomson
errShare
errSave
Effect of repeated mass drug administration on the transmission of yaws: a retrospective genomic epidemiology study
errThe Lancet Microbe
IF0
err2026-01-06
err0
errOAAI
errAmber Barton; Petra Pospíšilová; Camila G Beiras; Lucy N John; Wendy Houinei; Lorenzo Giacani; David Šmajs; Michael Marks; Oriol Mitjà; Mathew A Beale; Nicholas R Thomson
errShare
errSave
Pre- and postantibiotic epoch: The historical spread of antimicrobial resistance
errSCIENCE
IF45.8
err2025-12-04
err2
PREAI
errCazares, Adrian; Figueroa, Wendy; Cazares, Daniel; Lima, Leandro; Turnbull, Jake D.; McGregor, Hannah; Dicks, Jo; Alexander, Sarah; Iqbal, Zamin; Thomson, Nicholas R.
errShare
errSave
Clinical and environmental wastewater-based bacteriophage surveillance for high-impact diarrheal diseases, including cholera, in Bangladesh
errMBIO
IF4.7
err2025-12-01
err1
PREAI
errAkhtar, Marjahan; Amin, Md. Ariful; Hussain, Subah Nuzhat; Nafsi, Nazia Nazrul; Parvin, Nasrin; Khanam, Farhana; Islam, Md. Taufiqul; Islam Bhuiyan, Md. Amirul; Afroz, Rahima; Firoj, Md. Golam; Chowdhury, Fahima; Khan, Ashraful Islam; Jubair, Mohammad; Ryan, Edward T.; Shapiro, B. Jesse; Thomson, Nicholas R.; Nelson, Eric J.; Rahman, Md. Mustafizur; Begum, Yasmin Ara; Bhuiyan, Taufiqur Rahman; Qadri, Firdausi
errShare
errSave
Genomic analysis and antimicrobial resistance of Vibrio cholerae isolated during Zambia's 2023 cholera epidemic
errMICROBIAL GENOMICS
IF4
err2025-12-01
err0
PREAI
errNg'ombe, Harriet; Luchen, Charlie C.; Bote, Lia; Kasonde, Mpanga; Musonda, Kunda; Mwape, Kapambwe K.; Kuntawala, H.; Silwamba, Suwilanji; Chibuye, Mwelwa; Chibesa, Kennedy; Mbewe, Nyuma; Bosomprah, Samuel; Khan, Wesaal; Liebenberg, Lenine; de Oliveira, Tulio; Wilkinson, Eduan; Dorman, Matthew J.; Coghlan, Avril; Simuyandi, Michelo; Chilengi, Roma; Chisenga, Caroline; Thomson, Nicholas R.
errShare
errSave
Transmission of extended spectrum β-lactamase-producing Escherichia coli and antimicrobial resistance gene flow across One Health compartments in eastern Africa: a whole-genome sequence analysis from a prospective cohort study
errThe Lancet Microbe
IF0
err2025-11-25
err0
errOAAI
errPatrick Musicha; Mathew A Beale; Derek Cocker; Fiona A Oruru; Allan Zuza; Chifundo Salifu; George Katende; Sylvia Nanono; Fred Isaasi; Kondwani Chidziwisano; Lawrence Mugisha; Henry Kajumbula; David Musoke; Tracy Morse; Shevin T Jacob; Nicholas A Feasey; Nicholas R Thomson
errShare
errSave
Metagenomic identification of disease-causing Salmonella enterica serovars and antimicrobial resistance genes from paediatric faecal samples
errMICROBIAL GENOMICS
IF4
err2025-10-01
err0
PREAI
errDziegiel, Agata H.; Duong, Vu Thuy; Bloomfield, Samuel J.; Thomson, Nicholas R.; Maskell, Duncan J.; Wain, John; Janecko, Nicol; Baker, Stephen; Mather, Alison E.
errShare
errSave
Genomic insights into a diarrheal outbreak in Bangladesh reveal novel ETEC lineages and expansion of CS23 colonization factor
errMICROBIOLOGY SPECTRUM
IF3.8
err2025-09-01
err0
errOAAI
errRahman, Sadia Isfat Ara; Jubair, Mohammad; Akhtar, Marjahan; Akter, Afroza; Tauheed, Imam; Begum, Yasmin Ara; Bhattacharjee, Piyash; Afrad, Mokibul Hassan; Khanam, Farhana; Islam, Md Taufiqul; Khan, Ashraful Islam; Rahman, Mustafizur; Ryan, Edward T.; Fleckenstein, James M.; Bhuiyan, Taufiqur Rahman; Thomson, Nicholas Robert; Qadri, Firdausi; von Mentzer, Astrid; Chowdhury, Fahima
errShare
errSave
High diversity of Escherichia coli causing invasive disease in neonates in Malawi poses challenges for O-antigen based vaccine approach
errCommunications Medicine
IF6.3
err2025-07-18
err0
errOAAI
errOliver Pearse; Allan Zuza; Edith Tewesa; Patricia Siyabu; Alice J. Fraser; Jennifer Cornick; Kondwani Kawaza; Patrick Musicha; Nicholas R. Thomson; Nicholas A. Feasey; Eva Heinz
errShare
errSave
Competitive behaviors in Serratia marcescens are coordinately regulated by a lifestyle switch frequently inactivated in the clinical environment
errCELL HOST & MICROBE
IF18.7
err2025-02-01
err1
errOAAI
errWilliams, David J.; Hawkins, Alexandra; Hernandez, Ruth E.; Mariano, Giuseppina; Mathers, Katharine; Buchanan, Grant; Stonier, Barnaby J.; Inkster, Teresa; Leanord, Alistair; Chalmers, James D.; Thomson, Nicholas R.; Holden, Matthew T. G.; Coulthurst, Sarah J.
errShare
errSave
Salmonella carriage by geckos detected within households in Malawi
errONE HEALTH
IF4.5
err2024-12-01
err0
errOAAI
errWilson, Catherine N.; Musicha, Patrick; Beale, Mathew A.; Diness, Yohane; Kanjerwa, Oscar; Salifu, Chifundo; Katuah, Zefaniah; Duncan, Patricia; Nyangu, John; Mungu, Andrew; Deleza, Muonaouza; Banda, Lawrence; Makhaza, Lumbani; Elviss, Nicola; Jewell, Christopher P.; Pinchbeck, Gina; Thomson, Nicholas R.; Feasey, Nicholas A.; Fevre, Eric M.
errShare
errSave
Shigella sonnei: epidemiology, evolution, pathogenesis, resistance and host interactions
errNATURE REVIEWS MICROBIOLOGY
IF103.3
err2024-11-27
err0
PREAI
errScott, Timothy A.; Baker, Kate S.; Trotter, Caroline; Jenkins, Claire; Mostowy, Serge; Hawkey, Jane; Schmidt, Hayden; Holt, Kathryn E.; Thomson, Nicholas R.; Baker, Stephen
errShare
errSave
Surveillance of travel- associated isolates elucidates the diversity of non-pandemic Vibrio cholerae
errMICROBIAL GENOMICS
IF4
err2024-10-16
err0
errOAAI
errBote, Lia; Taylor-Brown, Alyce; Maes, Mailis; Ingle, Danielle J.; Valcanis, Mary; Howden, Benjamin P.; Thomson, Nicholas R.
errShare
errSave

Research Directions

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Co-authors
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Robert S. Fulton
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