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J

Jed A. Fuhrman

university of southern california

108H-index
381Paper Count
5.7WCitation Count
Published Papers 112
Publication Date
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In Situ Bacterioplankton Growth Partitioning by High-Resolution Metatranscriptomics
errEnvironmental Microbiology Reports
IF2.7
err2026-07-09
err0
errOAAI
errJ. Cesar Ignacio-Espinoza; Yuxuan Zou; Andrew Long; Shengwei Hou; David M. Needham; Jed A. Fuhrman
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Microbial fingerprinting of marine water masses in an Antarctic and hydrographically complex area
errBMC Biology
IF4.5
err2026-05-23
err0
errOAAI
errMireia Mestre; Alicia Prior; Camila Marín-Arias; Daniel R. Rodríguez-Solís; Rafael Laso-Pérez; Emilio Alarcón; Valeska Vásquez-Lepio; Humberto E. González; Ramiro Logares; Jesse McNichol; Jed Fuhrman; Camila Fernandez; Mark J. Hopwood; Juan Höfer
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errSave
A multidomain lens on the temporal dynamics of surface microbial communities in the Southern Ocean (2013–2019)
errMarine Environmental Research
IF3.2
err2026-04-08
err0
errOAAI
errLaiza C. Faria; Yubin Raut; Jesse McNichol; Nathan L.R. Williams; Jed A. Fuhrman; Camila N. Signori
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Converting Relative Amplicon Abundances to Absolute Abundances via Flow Cytometry: Metagenomic Validation and Application to Long Ocean Transects
errISME Communications
IF6.1
err2026-03-27
err0
errOAAI
errNathan L R Williams; Qicheng Bei; Yubin Raut; Jed A Fuhrman
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errSave
Functional biogeography of marine microbial heterotrophs
errSCIENCE
IF45.8
err2025-05-22
err0
PREAI
errZakem, Emily J.; McNichol, Jesse; Weissman, J. L.; Raut, Yubin; Xu, Liang; Halewood, Elisa R.; Carlson, Craig A.; Dutkiewicz, Stephanie; Fuhrman, Jed A.; Levine, Naomi M.
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Variational inference for microbiome survey data with application to global ocean data
errISME COMMUNICATIONS
IF6.1
err2025-05-02
err0
errOAAI
errMishra, Aditya; Mcnichol, Jesse; Fuhrman, Jed; Blei, David; Mueller, Christian L.
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With a little help from my friends: importance of protist-protist interactions in structuring marine protistan communities in the San Pedro Channel
errMSYSTEMS
IF4.6
err2025-02-18
err0
errOAAI
errGleich, Samantha J.; Mesrop, Lisa Y.; Cram, Jacob A.; Weissman, J. L.; Hu, Sarah K.; Yeh, Yi-Chun; Fuhrman, Jed A.; Caron, David A.
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errSave
Amplicon sequencing with internal standards yields accurate picocyanobacteria cell abundances as validated with flow cytometry
errISME COMMUNICATIONS
IF6.1
err2024-09-25
err0
errOAAI
errJones-Kellett, Alexandra E.; McNichol, Jesse C.; Raut, Yubin; Cain, Kelsy R.; Ribalet, Francois; Armbrust, E. Virginia; Follows, Michael J.; Fuhrman, Jed A.
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Microbial community composition predicts bacterial production across ocean ecosystems
errISME JOURNAL
IF10
err2024-08-06
err0
errOAAI
errConnors, Elizabeth; Dutta, Avishek; Trinh, Rebecca; Erazo, Natalia; Dasarathy, Srishti; Ducklow, Hugh; Weissman, J. L.; Yeh, Yi-Chun; Schofield, Oscar; Steinberg, Deborah; Fuhrman, Jed; Bowman, Jeff S.
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DeepMicroClass sorts metagenomic contigs into prokaryotes, eukaryotes and viruses
errgenomics proteomics bioinformatics
IF2.8
err2024-05-06
err2
errOAAI
errHou, Shengwei; Tang, Tianqi; Cheng, Siliangyu; Liu, Yuanhao; Xia, Tian; Chen, Ting; Fuhrman, Jed A.; Sun, Fengzhu
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Inter-comparison of marine microbiome sampling protocols
errISME COMMUNICATIONS
IF6.1
err2023-08-19
err3
errOAAI
errPascoal, Francisco; Tomasino, Maria Paola; Piredda, Roberta; Quero, Grazia Marina; Torgo, Luis; Poulain, Julie; Galand, Pierre E.; Fuhrman, Jed A.; Mitchell, Alex; Tinta, Tinkara; Turk Dermastia, Timotej; Fernandez-Guerra, Antonio; Vezzi, Alessandro; Logares, Ramiro; Malfatti, Francesca; Endo, Hisashi; Dabrowska, Anna Maria; De Pascale, Fabio; Sanchez, Pablo; Henry, Nicolas; Fosso, Bruno; Wilson, Bryan; Toshchakov, Stephan; Ferrant, Gregory Kevin; Grigorov, Ivo; Vieira, Fabio Rocha Jimenez; Costa, Rodrigo; Pesant, Stephane; Magalhaes, Catarina
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Symbiotic UCYN-A strains co-occurred with El Nino, relaxed upwelling, and varied eukaryotes over 10 years off Southern California
errISME COMMUNICATIONS
IF6.1
err2023-06-24
err4
errOAAI
errFletcher-Hoppe, Colette; Yeh, Yi-Chun; Raut, Yubin; Weissman, J. L.; Fuhrman, Jed A.
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Diverse Marine T4-like Cyanophage Communities Are Primarily Comprised of Low-Abundance Species Including Species with Distinct Seasonal, Persistent, Occasional, or Sporadic Dynamics
errVIRUSES-BASEL
IF3.5
err2023-02-20
err11
errOAAI
errDart, Emily; Fuhrman, Jed A. A.; Ahlgren, Nathan A. A.
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errSave
ViralCC retrieves complete viral genomes and virus-host pairs from metagenomic Hi-C data
errNATURE COMMUNICATIONS
IF15.7
err2023-01-31
err14
errOAAI
errDu, Yuxuan; Fuhrman, Jed A.; Sun, Fengzhu
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Constraining the composition and quantity of organic matter used by abundant marine Thaumarchaeota
errENVIRONMENTAL MICROBIOLOGY
IF4
err2022-12-26
err6
errOAAI
errParada, Alma E. E.; Mayali, Xavier; Weber, Peter K. K.; Wollard, Jessica; Santoro, Alyson E. E.; Fuhrman, Jed S. A.; Pett-Ridge, Jennifer; Dekas, Anne E. E.
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Effects of phytoplankton, viral communities, and warming on free-living and particle-associated marine prokaryotic community structure
errNATURE COMMUNICATIONS
IF15.7
err2022-12-23
err16
errOAAI
errYeh, Yi-Chun; Fuhrman, Jed A.
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Benchmarking Community-Wide Estimates of Growth Potential from Metagenomes Using Codon Usage Statistics
errMSYSTEMS
IF4.6
err2022-10-26
err6
errOAAI
errWeissman, J. L.; Peras, Marie; Barnum, Tyler P.; Fuhrman, Jed A.
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Composition and Biogeography of Planktonic Pro- and Eukaryotic Communities in the Atlantic Ocean: Primer Choice Matters
errFRONTIERS IN MICROBIOLOGY
IF4.5
err2022-06-28
err6
errOAAI
errMilke, Felix; Sanchez-Garcia, Selene; Dlugosch, Leon; McNichol, Jesse; Fuhrman, Jed; Simon, Meinhard; Wagner-Doebler, Irene
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Contrasting diversity patterns of prokaryotes and protists over time and depth at the San-Pedro Ocean Time series
errISME COMMUNICATIONS
IF6.1
err2022-04-13
err44
errOAAI
errYeh, Yi-Chun; Fuhrman, Jed A.
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Immune lag is a major cost of prokaryotic adaptive immunity during viral outbreaks
errPROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
IF3.5
err2021-10-20
err4
errOAAI
errWeissman, Jake L.; Alseth, Ellinor O.; Meaden, Sean; Westra, Edze R.; Fuhrman, Jed A.
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Research Directions

No research directions
Co-authors
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