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Deep ocean metagenomes provide insight into the metabolic architecture of bathypelagic microbial communities Acinas, Silvia G.; Sanchez, Pablo; Salazar, Guillem; Cornejo-Castillo, Francisco M.; Sebastian, Marta; Logares, Ramiro; Royo-Llonch, Marta; Paoli, Lucas; Sunagawa, Shinichi; Hingamp, Pascal; Ogata, Hiroyuki; Lima-Mendez, Gipsi; Roux, Simon; Gonzalez, Jose M.; Arrieta, Jesus M.; Alam, Intikhab S.; Kamau, Allan; Bowler, Chris; Raes, Jeroen; Pesant, Stephane; Bork, Peer; Agusti, Susana; Gojobori, Takashi; Vaque, Dolors; Sullivan, Matthew B.; Pedros-Alio, Carlos; Massana, Ramon; Duarte, Carlos M.; Gasol, Josep M. Share Save
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Microbial abundance, activity and population genomic profiling with mOTUs2 Milanese, Alessio; Mende, Daniel R.; Paoli, Lucas; Salazar, Guillem; Ruscheweyh, Hans-Joachim; Cuenca, Miguelangel; Hingamp, Pascal; Alves, Renato; Costea, Paul I.; Coelho, Luis Pedro; Schmidt, Thomas S. B.; Almeida, Alexandre; Mitchell, Alex L.; Finn, Robert D.; Huerta-Cepas, Jaime; Bork, Peer; Zeller, Georg; Sunagawa, Shinichi Share Save
Minimum Information about an Uncultivated Virus Genome (MIUViG) Roux, Simon; Adriaenssens, Evelien M.; Dutilh, Bas E.; Koonin, Eugene V.; Kropinski, Andrew M.; Krupovic, Mart; Kuhn, Jens H.; Lavigne, Rob; Brister, J. Rodney; Varsani, Arvind; Amid, Clara; Aziz, Ramy K.; Bordenstein, Seth R.; Bork, Peer; Breitbart, Mya; Cochrane, Guy R.; Daly, Rebecca A.; Desnues, Christelle; Duhaime, Melissa B.; Emerson, Joanne B.; Enault, Francois; Fuhrman, Jed A.; Hingamp, Pascal; Hugenholtz, Philip; Hurwitz, Bonnie L.; Ivanova, Natalia N.; Labonte, Jessica M.; Lee, Kyung-Bum; Malmstrom, Rex R.; Martinez-Garcia, Manuel; Mizrachi, Ilene Karsch; Ogata, Hiroyuki; Paez-Espino, David; Petit, Marie-Agnes; Putonti, Catherine; Rattei, Thomas; Reyes, Alejandro; Rodriguez-Valera, Francisco; Rosario, Karyna; Schriml, Lynn; Schulz, Frederik; Steward, Grieg F.; Sullivan, Matthew B.; Sunagawa, Shinichi; Suttle, Curtis A.; Temperton, Ben; Tringe, Susannah G.; Thurber, Rebecca Vega; Webster, Nicole S.; Whiteson, Katrine L.; Wilhelm, Steven W.; Wommack, K. Eric; Woyke, Tanja; Wrighton, Kelly C.; Yilmaz, Pelin; Yoshida, Takashi; Young, Mark J.; Yutin, Natalya; Allen, Lisa Zeigler; Kyrpides, Nikos C.; Eloe-Fadrosh, Emiley A. Share Save
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Locality and diel cycling of viral production revealed by a 24 h time course cross-omics analysis in a coastal region of Japan (vol 12, pg 1287, 2018) Yoshida, Takashi; Nishimura, Yosuke; Watai, Hiroyasu; Haruki, Nana; Morimoto, Daichi; Kaneko, Hiroto; Honda, Takashi; Yamamoto, Keigo; Hingamp, Pascal; Sako, Yoshihiko; Goto, Susumu; Ogata, Hiroyuki Share Save
The Ocean Gene Atlas: exploring the biogeography of plankton genes online Villar, Emilie; Vannier, Thomas; Vernette, Caroline; Lescot, Magali; Cuenca, Miguelangel; Alexandre, Aurelien; Bachelerie, Paul; Rosnet, Thomas; Pelletier, Eric; Sunagawa, Shinichi; Hingamp, Pascal Share Save
Locality and diel cycling of viral production revealed by a 24 h time course cross-omics analysis in a coastal region of Japan Yoshida, Takashi; Nishimura, Yosuke; Watai, Hiroyasu; Haruki, Nana; Morimoto, Daichi; Kaneko, Hiroto; Honda, Takashi; Yamamoto, Keigo; Hingamp, Pascal; Sako, Yoshihiko; Goto, Susumu; Ogata, Hiroyuki Share Save
A global ocean atlas of eukaryotic genes Carradec, Quentin; Pelletier, Eric; Da Silva, Corinne; Alberti, Adriana; Seeleuthner, Yoann; Blanc-Mathieu, Romain; Lima-Mendez, Gipsi; Rocha, Fabio; Tirichine, Leila; Labadie, Karine; Kirilovsky, Amos; Bertrand, Alexis; Engelen, Stefan; Madoui, Mohammed-Amin; Meheust, Raphael; Poulain, Julie; Romac, Sarah; Richter, Daniel J.; Yoshikawa, Genki; Dimier, Celine; Kandels-Lewis, Stefanie; Picheral, Marc; Searson, Sarah; Jaillon, Olivier; Aury, Jean-Marc; Karsenti, Eric; Sullivan, Matthew B.; Sunagawa, Shinichi; Bork, Peer; Not, Fabrice; Hingamp, Pascal; Raes, Jeroen; Guidi, Lionel; Ogata, Hiroyuki; de Vargas, Colomban; Iudicone, Daniele; Bowler, Chris; Wincker, Patrick Share Save
Single-cell genomics of multiple uncultured stramenopiles reveals underestimated functional diversity across oceans Seeleuthner, Yoann; Mondy, Samuel; Lombard, Vincent; Carradec, Quentin; Pelletier, Eric; Wessner, Marc; Leconte, Jade; Mangot, Jean-Francois; Poulain, Julie; Labadie, Karine; Logares, Ramiro; Sunagawa, Shinichi; de Berardinis, Veronique; Salanoubat, Marcel; Dimier, Celine; Kandels-Lewis, Stefanie; Picheral, Marc; Searson, Sarah; Pesant, Stephane; Poulton, Nicole; Stepanauskas, Ramunas; Bork, Peer; Bowler, Chris; Hingamp, Pascal; Sullivan, Matthew B.; Iudicone, Daniele; Massana, Ramon; Aury, Jean-Marc; Henrissat, Bernard; Karsenti, Eric; Jaillon, Olivier; Sieracki, Mike; de Vargas, Colomban; Wincker, Patrick Share Save
Environmental Viral Genomes Shed New Light on Virus-Host Interactions in the Ocean Nishimura, Yosuke; Watai, Hiroyasu; Honda, Takashi; Mihara, Tomoko; Omae, Kimiho; Roux, Simon; Blanc-Mathieu, Romain; Yamamoto, Keigo; Hingamp, Pascal; Sako, Yoshihiko; Sullivan, Matthew B.; Goto, Susumu; Ogata, Hiroyuki; Yoshida, Takashi Share Save
Cyanobacterial symbionts diverged in the late Cretaceous towards lineage-specific nitrogen fixation factories in single-celled phytoplankton Cornejo-Castillo, Francisco M.; Cabello, Ana M.; Salazar, Guillem; Sanchez-Baracaldo, Patricia; Lima-Mendez, Gipsi; Hingamp, Pascal; Alberti, Adriana; Sunagawa, Shinichi; Bork, Peer; de Vargas, Colomban; Raes, Jeroen; Bowler, Chris; Wincker, Patrick; Zehr, Jonathan P.; Gasol, Josep M.; Massana, Ramon; Acinas, Silvia G. Share Save
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Deep sequencing of amplified Prasinovirus and host green algal genes from an Indian Ocean transect reveals interacting trophic dependencies and new genotypes Clerissi, Camille; Desdevises, Yves; Romac, Sarah; Audic, Stephane; de Vargas, Colomban; Acinas, Silvia G.; Casotti, Raffaella; Poulain, Julie; Wincker, Patrick; Hingamp, Pascal; Ogata, Hiroyuki; Grimsley, Nigel Share Save
Reverse transcriptase genes are highly abundant and transcriptionally active in marine plankton assemblages Lescot, Magali; Hingamp, Pascal; Kojima, Kenji K.; Villar, Emilie; Romac, Sarah; Veluchamy, Alaguraj; Boccara, Martine; Jaillon, Olivier; Iudicone, Daniele; Bowler, Chris; Wincker, Patrick; Claverie, Jean-Michel; Ogata, Hiroyuki Share Save
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