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CaDAVEr: a metagenome-assembled genome catalog of microbial decomposers across vertebrate environments Seitz, Valerie A.; McGivern, Bridget B.; Shaffer, Michael; Borton, Mikayla A.; Belk, Aeriel D.; Ghadermazi, Parsa; Martino, Cameron; Shenhav, Liat; Zhang, Anru R.; Shi, Pixu; Emmons, Alexandra; Deel, Heather; Xu, Zhenjiang Zech; Nieciecki, Victoria; Zhu, Qiyun; Cantrell, Kalen; Ben-Hur, Asa; Reed, Sasha C.; Humphry, Greg C.; Ackermann, Gail; McDonald, Daniel; Chan, Siu Hung Joshua; Connor, Melissa; Boyd, Derek A.; Smith, Jake; Watson, Jenna M. S.; Vidoli, Giovanna; Steadman, Dawnie; Lynne, Aaron M.; Bucheli, Sibyl; Carter, David O.; Burcham, Zachary M.; Knight, Rob; Wrighton, Kelly C.; Metcalf, Jessica L. Share Save
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SARS-CoV-2 infectivity can be modulated through bacterial grooming of the glycocalyx Martino, Cameron; Kellman, Benjamin P.; Sandoval, Daniel R.; Clausen, Thomas Mandel; Cooper, Robert; Benjdia, Alhosna; Soualmia, Feryel; Clark, Alex E.; Garretson, Aaron F.; Marotz, Clarisse A.; Song, Se Jin; Wandro, Stephen; Zaramela, Livia S.; Salido, Rodolfo A.; Zhu, Qiyun; Armingol, Erick; Vazquez-Baeza, Yoshiki; Mcdonald, Daniel; Sorrentino, James T.; Taylor, Bryn; Belda-Ferre, Pedro; Das, Promi; Ali, Farhana; Liang, Chenguang; Zhang, Yujie; Schifanella, Luca; Covizzi, Alice; Lai, Alessia; Riva, Agostino; Basting, Christopher; Broedlow, Courtney Ann; Havulinna, Aki S.; Jousilahti, Pekka; Estaki, Mehrbod; Kosciolek, Tomasz; Kuplicki, Rayus; Victor, Teresa A.; Paulus, Martin P.; Savage, Kristen E.; Benbow, Jennifer L.; Spielfogel, Emma S.; Anderson, Cheryl A. M.; Martinez, Maria Elena; Lacey, James V.; Huang, Shi; Haiminen, Niina; Parida, Laxmi; Kim, Ho-Cheol; Gilbert, Jack A.; Sweeney, Daniel A.; Allard, Sarah M.; Swafford, Austin D.; Cheng, Susan; Inouye, Michael; Niiranen, Teemu; Jain, Mohit; Salomaa, Veikko; Zengler, Karsten; Klatt, Nichole R.; Hasty, Jeff; Berteau, Olivier; Carlin, Aaron F.; Esko, Jeffrey D.; Lewis, Nathan E.; Knight, Rob Share Save
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Diverse microviruses circulating in invertebrates within a lake ecosystem Lund, Michael C.; Hopkins, Andrew; Dayaram, Anisha; Galatowitsch, Mark L.; Stainton, Daisy; Harding, Jon S.; Lefeuvre, Pierre; Zhu, Qiyun; Kraberger, Simona; Varsani, Arvind Share Save
Phylogeny-Aware Analysis of Metagenome Community Ecology Based on Matched Reference Genomes while Bypassing Taxonomy (vol 7, pg e00167, 2023) Zhu, Qiyun; Huang, Shi; Gonzalez, Antonio; Mcgrath, Imran; Mcdonald, Daniel; Haiminen, Niina; Armstrong, George; Vazquez-Baeza, Yoshiki; Yu, Julian; Kuczynski, Justin; Sepich-Poore, Gregory D.; Swafford, Austin D.; Das, Promi; Shaffer, Justin P.; Lejzerowicz, Franck; Belda-Ferre, Pedro; Havulinna, Aki S.; Meric, Guillaume; Niiranen, Teemu; Lahti, Leo; Salomaa, Veikko; Kim, Ho-Cheol; Jain, Mohit; Inouye, Michael; Gilbert, Jack A.; Knight, Rob Share Save
The dichotomous roles of microbial- modified bile acids 7-oxo-DCA and isoDCA in intestinal tumorigenesis Dong, Xingchen; Sun, Fei; Secaira-Morocho, Henry; Hui, Alisa; Wang, Ke; Cai, Chunmiao; Udgata, Shirsa; Low, Brian; Wei, Songlin; Chen, Xinyi; Qi, Ming; Pasch, Cheri A.; Xu, Wei; Jiang, Jiaoyang; Zhu, Qiyun; Huan, Tao; Deming, Dustin A.; Fu, Ting Share Save
House dust metagenome and pulmonary function in a US farming population Lee, Mikyeong; Kaul, Abhishek; Ward, James M.; Zhu, Qiyun; Richards, Marie; Wang, Ziyue; Gonzalez, Antonio; Parks, Christine G.; Freeman, Laura E. Beane; Umbach, David M.; Motsinger-Reif, Alison A.; Knight, Rob; London, Stephanie J. Share Save
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Robustness of cancer microbiome signals over a broad range of methodological variation (vol 43, pg 1127, 2024) Sepich-Poore, Gregory D.; McDonald, Daniel; Kopylova, Evguenia; Guccione, Caitlin; Zhu, Qiyun; Austin, George; Carpenter, Carolina; Fraraccio, Serena; Wandro, Stephen; Kosciolek, Tomasz; Janssen, Stefan; Metcalf, Jessica L.; Song, Se Jin; Kanbar, Jad; Miller-Montgomery, Sandrine; Heaton, Robert; Mckay, Rana; Patel, Sandip Pravin; Swafford, Austin D.; Korem, Tal; Knight, Rob Share Save
Integration of polygenic and gut metagenomic risk prediction for common diseases Liu, Yang; Ritchie, Scott C.; Teo, Shu Mei; Ruuskanen, Matti O.; Kambur, Oleg; Zhu, Qiyun; Sanders, Jon; Vazquez-Baeza, Yoshiki; Verspoor, Karin; Jousilahti, Pekka; Lahti, Leo; Niiranen, Teemu; Salomaa, Veikko; Havulinna, Aki S.; Knight, Rob; Meric, Guillaume; Inouye, Michael Share Save
Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort (vol 54, pg 134, 2022) Qin, Youwen; Havulinna, Aki S.; Liu, Yang; Jousilahti, Pekka; Ritchie, Scott C.; Tokolyi, Alex; Sanders, Jon G.; Valsta, Liisa; Brozynska, Marta; Zhu, Qiyun; Tripathi, Anupriya; Vazquez-Baeza, Yoshiki; Loomba, Rohit; Cheng, Susan; Jain, Mohit; Niiranen, Teemu; Lahti, Leo; Knight, Rob; Salomaa, Veikko; Inouye, Michael; Meric, Guillaume Share Save
Robustness of cancer microbiome signals over a broad range of methodological variation Sepich-Poore, Gregory D.; Mcdonald, Daniel; Kopylova, Evguenia; Guccione, Caitlin; Zhu, Qiyun; Austin, George; Carpenter, Carolina; Fraraccio, Serena; Wandro, Stephen; Kosciolek, Tomasz; Janssen, Stefan; Metcalf, Jessica L.; Song, Se Jin; Kanbar, Jad; Miller-Montgomery, Sandrine; Heaton, Robert; Mckay, Rana; Patel, Sandip Pravin; Swafford, Austin D.; Korem, Tal; Knight, Rob Share Save
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