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M

Mahan Ghafari

university of oxford

16H-index
68Paper Count
2.3KCitation Count
Published Papers 19
Publication Date
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Large-scale genomic surveillance reveals immunosuppression drives mutation dynamics in persistent SARS-CoV-2 infections
errNature Communications
IF15.7
err2026-06-19
err0
errOAAI
errMark P. Khurana; Alexandros Katsiferis; Neil Scheidwasser; Mathilde Marie Brünnich Sloth; Jacob Curran-Sebastian; Christian Morgenstern; Man-Hung Eric Tang; Jannik Fonager; Morten Rasmussen; Marc Stegger; Sune Lehmann; Charles Whittaker; Laust H. Mortensen; Pikka Jokelainen; Moritz U. G. Kraemer; Neil M. Ferguson; Mahan Ghafari; Tyra G. Krause; David A. Duchêne; Samir Bhatt
errShare
errSave
Biased estimates of phylogenetic branch lengths resulting from the discretised Gamma model of site rate heterogeneity
errSystematic Biology
IF5.7
err2026-05-20
err0
errOAAI
errLuca Ferretti; Tanya Golubchik; Francesco Di Lauro; Mahan Ghafari; Julian Villabona-Arenas; Katherine E Atkins; Christophe Fraser; Matthew Hall
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errSave
SARS-CoV-2 genomic diversity and within-host evolution in individuals with persistent infection in the UK: an observational, longitudinal, population-based surveillance study
errThe Lancet Microbe
IF0
err2025-07-30
err0
errOAAI
errMahan Ghafari; Steven A Kemp; Matthew Hall; Joseph Clarke; Luca Ferretti; Laura Thomson; Ruth Studley; Ann Sarah Walker; Tanya Golubchik; Katrina Lythgoe
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errSave
Revisiting the origins of the Sobemovirus genus: A case for ancient origins of plant viruses
errPLOS PATHOGENS
IF4.9
err2024-01-11
err1
errOAAI
errGhafari, Mahan; Somera, Merike; Sarmiento, Cecilia; Niehl, Annette; Hebrard, Eugenie; Tsoleridis, Theocharis; Ball, Jonathan; Moury, Benoit; Lemey, Philippe; Katzourakis, Aris; Fargette, Denis
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errSave
A quantitative evaluation of the impact of vaccine roll-out rate and coverage on reducing deaths: insights from the first 2 years of COVID-19 epidemic in Iran
errBMC MEDICINE
IF8.3
err2023-11-13
err1
errOAAI
errGhafari, Mahan; Hosseinpour, Sepanta; Rezaee-Zavareh, Mohammad Saeid; Dascalu, Stefan; Rostamian, Somayeh; Aramesh, Kiarash; Madani, Kaveh; Kordasti, Shahram
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errSave
Insights into SARS-CoV-2 in Angola during the COVID-19 peak: Molecular epidemiology and genome surveillance
errINFLUENZA AND OTHER RESPIRATORY VIRUSES
IF4.2
err2023-09-22
err1
errOAAI
errFrancisco, Ngiambudulu M.; van Wyk, Stephanie; Moir, Monika; San, James Emmanuel; Sebastiao, Cruz S.; Tegally, Houriiyah; Xavier, Joicymara; Maharaj, Akhil; Neto, Zoraima; Afonso, Pedro; Jandondo, Domingos; Paixao, Joana; Miranda, Julio; David, Kumbelembe; Ingles, Luzia; Pereira, Amilton; Paulo, Agostinho; Carralero, Raisa Rivas; Freitas, Helga Reis; Mufinda, Franco; Lutucuta, Silvia; Ghafari, Mahan; Giovanetti, Marta; Giandhari, Jennifer; Pillay, Sureshnee; Naidoo, Yeshnee; Singh, Lavanya; Tshiabuila, Derek; Martin, Darren Patrick; Chabuka, Lucious; Choga, Wonderful; Wanjohi, Dorcas; Mwangi, Sarah; Pillay, Yusasha; Kebede, Yenew; Shumba, Edwin; Ondoa, Pascale; Baxter, Cheryl; Wilkinson, Eduan; Tessema, Sofonias Kifle; Katzourakis, Aris; Lessells, Richard; de Oliveira, Tulio; Morais, Joana
errShare
errSave
The evolution of SARS-CoV-2
errNATURE REVIEWS MICROBIOLOGY
IF103.3
err2023-04-05
err427
errOAAI
errMarkov, Peter V.; Ghafari, Mahan; Beer, Martin; Lythgoe, Katrina; Simmonds, Peter; Stilianakis, Nikolaos I.; Katzourakis, Aris
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errSave
Estimating SARS-CoV-2 variant fitness and the impact of interventions in England using statistical and geo-spatial agent-based models
errPHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY A-MATHEMATICAL PHYSICAL AND ENGINEERING SCIENCES
IF3.7
err2022-08-15
err9
errOAAI
errHinch, Robert; Panovska-Griffiths, Jasmina; Probert, William J. M.; Ferretti, Luca; Wymant, Chris; Di Lauro, Francesco; Baya, Nikolas; Ghafari, Mahan; Abeler-Dorner, Lucie; Fraser, Christophe
errShare
errSave
A framework for reconstructing SARS-CoV-2 transmission dynamics using excess mortality data
errNATURE COMMUNICATIONS
IF15.7
err2022-05-31
err6
errOAAI
errGhafari, Mahan; Watson, Oliver J.; Karlinsky, Ariel; Ferretti, Luca; Katzourakis, Aris
errShare
errSave
Purifying Selection Determines the Short-Term Time Dependency of Evolutionary Rates in SARS-CoV-2 and pH1N1 Influenza
errMOLECULAR BIOLOGY AND EVOLUTION
IF5.3
err2022-01-17
err34
errOAAI
errGhafari, Mahan; du Plessis, Louis; Raghwani, Jayna; Bhatt, Samir; Xu, Bo; Pybus, Oliver G.; Katzourakis, Aris
errShare
errSave
Engaging Religious Institutions and Faith-Based Communities in Public Health Initiatives: A Case Study of the Romanian Orthodox Church During the COVID-19 Pandemic
errFRONTIERS IN PUBLIC HEALTH
IF3.4
err2021-12-16
err11
errOAAI
errDascalu, Stefan; Flammer, Patrik G.; Ghafari, Mahan; Henson, Shaun C.; Nascimento, Roger; Bonsall, Michael B.
errShare
errSave
A mechanistic evolutionary model explains the time-dependent pattern of substitution rates in viruses
errCURRENT BIOLOGY
IF7.5
err2021-11-01
err25
errOAAI
errGhafari, Mahan; Simmonds, Peter; Pybus, Oliver G.; Katzourakis, Aris
errShare
errSave
Lessons for preparedness and reasons for concern from the early COVID-19 epidemic in Iran
errEPIDEMICS
IF2.4
err2021-09-01
err17
errOAAI
errGhafari, Mahan; Hejazi, Bardia; Karshenas, Arman; Dascalu, Stefan; Kadvidar, Alireza; Khosravi, Mohammad A.; Abbasalipour, Maryam; Heydari, Majid; Zeinali, Sirous; Ferretti, Luca; Ledda, Alice; Katzourakis, Aris
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errSave
Estimating the false-negative test probability of SARS-CoV-2 by RT-PCR
errEUROSURVEILLANCE
IF7.8
err2020-12-17
err146
errOAAI
errWikramaratna, Paul S.; Paton, Robert S.; Ghafari, Mahan; Lourenco, Jose
errShare
errSave
Inferring Transmission Bottleneck Size from Viral Sequence Data Using a Novel Haplotype Reconstruction Method
errJOURNAL OF VIROLOGY
IF3.8
err2020-06-16
err19
errOAAI
errGhafari, Mahan; Lumby, Casper K.; Weissman, Daniel B.; Illingworth, Christopher J. R.
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errSave
New turbulence modeling for air/water stratified flow
errJOURNAL OF OCEAN ENGINEERING AND SCIENCE
IF11.8
err2020-03-01
err3
errOAAI
errGhafari, M.; Ghofrani, M. B.
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errSave
New turbulence modeling for simulation of Direct Contact Condensation in two-phase pressurized thermal shock
errPROGRESS IN NUCLEAR ENERGY
IF3.2
err2018-09-01
err4
PREAI
errGhafari, M.; Ghofrani, M. B.; D'Auria, F.
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errSave
Observation of a crossover in kinetic aggregation of Palladium colloids
errAPPLIED SURFACE SCIENCE
IF6.9
err2015-10-01
err1
errOAAI
errGhafari, M.; Ranjbar, M.; Rouhani, S.
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errSave
KNOWLEDGE AND ATTITUDE TOWARDS HIV/AIDS AMONG POST-SECONDARY SCHOOL MALAYSIAN URBAN YOUTHS
errSEXUALLY TRANSMITTED INFECTIONS
IF2.9
err2013-07-13
err0
errOAAI
errShamsuddin, K.; Ghafari, M.; Amin, R. Mohd; Sutan, R.; Puteh, S. E. Wan; Shah, S. A.; Mahdy, Z. A.; Ahmad, S.
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errSave

Research Directions

The data has not been retrieved yet.
Co-authors
Cooperation Journals
O
Oliver G. Pybus
H-index: 128 · Papers: 615
N
Neil M. Ferguson
H-index: 114 · Papers: 554
P
Philippe Lemey
H-index: 95 · Papers: 619
S
Samir Bhatt
H-index: 94 · Papers: 477
C
Christophe Fraser
H-index: 94 · Papers: 437
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