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H

Hani Jieun Kim

University of Sydney

14H-index
41Paper Count
882Citation Count
Published Papers 16
Publication Date
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Phosphoproteomics of aged insulin-resistant bone identifies P70S6K phosphorylation of AFF4 as a gene-specific transcriptional regulator
errNature Communications
IF15.7
err2025-12-31
err0
errOAAI
errMriga Dutt; Luoping Liao; Hani Jieun Kim; Ronnie Blazev; Audrey Chan; Hitesh Kore; Ayenachew Bezawork-Geleta; Li Dong; Isela Sarahi Rivera; Natalie K. Y. Wee; Jeffrey Molendijk; Julian P. H. Wong; Vanessa R. Haynes; Veronica Uribe; Gordon S. Lynch; Kelly A. Smith; Magdalene K. Montgomery; Matthew J. Watt; Pengyi Yang; Garron T. Dodd; Stephin J. Vervoort; Natalie A. Sims; Benjamin L. Parker
errShare
errSave
Connecting cilium, stress response, and proteostasis abnormalities inform variant and therapy assessment in RPGRIP1 retinal organoids
errStem Cell Reports
IF5.1
err2025-11-20
err0
errOAAI
errTo Ha Loi; Anson Cheng; Hani Jieun Kim; Milan Fernando; Benjamin M. Nash; Nader Aryamanesh; John R. Grigg; Pengyi Yang; Anai Gonzalez-Cordero; Robyn V. Jamieson
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errSave
Multitask benchmarking of single-cell multimodal omics integration methods
errNature Methods
IF32.1
err2025-10-13
err0
errOAAI
errChunlei Liu; Sichang Ding; Hani Jieun Kim; Siqu Long; Di Xiao; Shila Ghazanfar; Pengyi Yang
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errSave
Lineage contribution of the mesendoderm progenitors in the gastrulating mouse embryo
errDevelopmental Cell
IF8.7
err2025-03-24
err0
PREAI
errV. Pragathi Masamsetti; Nazmus Salehin; Hani Jieun Kim; Nicole Santucci; Megan Weatherstone; Riley McMahon; Lee L. Marshall; Hilary Knowles; Jane Sun; Josh B. Studdert; Nader Aryamanesh; Ran Wang; Naihe Jing; Pengyi Yang; Pierre Osteil; Patrick P.L. Tam
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errSave
Decoding the hallmarks of allograft dysfunction with a comprehensive pan-organ transcriptomic atlas
errNATURE MEDICINE
IF50
err2024-06-18
err1
errOAAI
errRobertson, Harry; Kim, Hani Jieun; Li, Jennifer; Robertson, Nicholas; Robertson, Paul; Jimenez-Vera, Elvira; Ameen, Farhan; Tran, Andy; Trinh, Katie; O'Connell, Philip J.; Yang, Jean Y. H.; Rogers, Natasha M.; Patrick, Ellis
errShare
errSave
Evaluating spatially variable gene detection methods for spatial transcriptomics data
errGENOME BIOLOGY
IF9.4
err2024-01-15
err3
errOAAI
errChen, Carissa; Kim, Hani Jieun; Yang, Pengyi
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errSave
Gene regulatory network reconstruction: harnessing the power of single-cell multi-omic data
errNPJ SYSTEMS BIOLOGY AND APPLICATIONS
IF3.5
err2023-10-19
err23
errOAAI
errKim, Daniel; Tran, Andy; Kim, Hani Jieun; Lin, Yingxin; Yang, Jean Yee Hwa; Yang, Pengyi
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errSave
Vascular senescence and leak are features of the early breakdown of the blood-brain barrier in Alzheimer's disease models
errGEROSCIENCE
IF5.4
err2023-10-02
err23
errOAAI
errTing, Ka Ka; Coleman, Paul; Kim, Hani Jieun; Zhao, Yang; Mulangala, Jocelyne; Cheng, Ngan Ching; Li, Wan; Gunatilake, Dilini; Johnstone, Daniel M.; Loo, Lipin; Neely, G. Gregory; Yang, Pengyi; Gotz, Jurgen; Vadas, Mathew A.; Gamble, Jennifer R.
errShare
errSave
Comprehensive characterization of fetal and mature retinal cell identity to assess the fidelity of retinal organoids
errSTEM CELL REPORTS
IF5.1
err2023-01-01
err8
errOAAI
errKim, Hani Jieun; O'Hara-Wright, Michelle; Kim, Daniel; Ha Loi, To; Lim, Benjamin Y.; V. Jamieson, Robyn; Gonzalez-Cordero, Anai; Yang, Pengyi
errShare
errSave
Uncovering cell identity through differential stability with Cepo
errNATURE COMPUTATIONAL SCIENCE
IF18.3
err2021-12-20
err10
errOAAI
errKim, Hani Jieun; Wang, Kevin; Chen, Carissa; Lin, Yingxin; Tam, Patrick P. L.; Lin, David M.; Yang, Jean Y. H.; Yang, Pengyi
errShare
errSave
Transcriptomic Analysis Identifies A Tolerogenic Dendritic Cell Signature
errFRONTIERS IN IMMUNOLOGY
IF5.9
err2021-10-20
err13
errOAAI
errRobertson, Harry; Li, Jennifer; Kim, Hani Jieun; Rhodes, Jake W.; Harman, Andrew N.; Patrick, Ellis; Rogers, Natasha M.
errShare
errSave
Defining cell identity beyond the premise of differential gene expression
errCELL REGENERATION
IF4.7
err2021-05-01
err3
errOAAI
errKim, Hani Jieun; Tam, Patrick P. L.; Yang, Pengyi
errShare
errSave
PhosR enables processing and functional analysis of phosphoproteomic data
errCELL REPORTS
IF6.9
err2021-02-01
err51
errOAAI
errKim, Hani Jieun; Kim, Taiyun; Hoffman, Nolan J.; Xiao, Di; James, David E.; Humphrey, Sean J.; Yang, Pengyi
errShare
errSave
scClassify: sample size estimation and multiscale classification of cells using single and multiple reference
errMOLECULAR SYSTEMS BIOLOGY
IF7.7
err2020-06-22
err80
errOAAI
errLin, Yingxin; Cao, Yue; Kim, Hani Jieun; Salim, Agus; Speed, Terence P.; Lin, David M.; Yang, Pengyi; Yang, Jean Yee Hwa
errShare
errSave
scReClassify: post hoc cell type classification of single-cell rNA-seq data
errBMC GENOMICS
IF3.7
err2019-12-24
err20
errOAAI
errKim, Taiyun; Lo, Kitty; Geddes, Thomas A.; Kim, Hani Jieun; Yang, Jean Yee Hwa; Yang, Pengyi
errShare
errSave
Transcriptional network dynamics during the progression of pluripotency revealed by integrative statistical learning
errNUCLEIC ACIDS RESEARCH
IF13.1
err2019-12-19
err12
errOAAI
errKim, Hani Jieun; Osteil, Pierre; Humphrey, Sean J.; Cinghu, Senthilkumar; Oldfield, Andrew J.; Patrick, Ellis; Wilkie, Emilie E.; Peng, Guangdun; Suo, Shengbao; Jothi, Raja; Tam, Patrick P. L.; Yang, Pengyi
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errSave

Research Directions

No research directions
Co-authors
Cooperation Journals
D
David E. James
H-index: 108 · Papers: 576
T
Terence P. Speed
H-index: 108 · Papers: 640
J
Jürgen Götz
H-index: 87 · Papers: 373
P
Patrick Tam
H-index: 85 · Papers: 572
M
Matthew J. Watt
H-index: 81 · Papers: 434
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