Rory Bowden - Publications, H-index & Citations

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Rory Bowden

walter & eliza hall institute

63H-index

207Paper Count

1.5WCitation Count

Published Papers 95

Publication Date

KAT6A is essential for developmental control gene expression in neural stem and progenitor cells

PLoS Genetics

IF3.7

2026-05-01

PREAI

Voss, Anne K.; Eccles, Samantha; Wichmann, Johannes; Abeysekera, Waruni; Bergamasco, Maria I.; Garnham, Alexandra L.; Ranathunga, Nishika; Yang, Yuqing; Bowden, Rory; Smyth, Gordon K.; Thomas, Tim

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Divergent inflammatory and neurology-related protein levels in long COVID following primary and breakthrough SARS-CoV-2 infections

Communications Medicine

IF6.3

2026-04-13

OAAI

Amit Bansal; Sam W. Z. Olechnowicz; Nicholas Kiernan-Walker; Jacob Cumming; Imadh Abdul Azeez; Ramin Mazhari; Rebecca J. Cox; Ivo Mueller; Rory Bowden; Emily M. Eriksson

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Alpseq: an open-source workflow to turbocharge nanobody discovery with high-throughput sequencing

mAbs

IF7.3

2026-02-03

OAAI

Kathleen Zeglinski; Jakob Schuster; Jaison D Sa; Amy Adair; Jing Deng; Phillip Pymm; Matthew E. Ritchie; Rory Bowden; Wai-Hong Tham; Quentin Gouil

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Non-apoptotic caspase-8 is critical for orchestrating exaggerated inflammation during severe SARS-CoV-2 infection

Nature Communications

IF15.7

2025-11-13

OAAI

Stefanie M. Bader; Lena Scherer; Reet Bhandari; Allan J. Motyer; James P. Cooney; Liana Mackiewicz; Merle Dayton; Dylan Sheerin; David V. L. Romero; Jan Schaefer; Jiyi Pang; Siqi Chen; Kael Schoffer; Le Wang; Xinyi Jin; Daniel Batey; Raymond K. H. Yip; Ishrat Zaman; Pradeep Rajasekhar; Matthew J. Gartner; Stephen Wilcox; Lachlan Whitehead; Smitha Rose Georgy; Ana Maluenda; Kathryn C. Davidson; Cody C. Allison; Rory Bowden; Kerstin Brinkmann; Marie-Liesse Asselin-Labat; Belinda Phipson; Maria C. Tanzer; Marco J. Herold; Andre L. Samson; James E. Vince; Andreas Strasser; Marc Pellegrini; Marcel Doerflinger

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Profiling the spatial architecture of multiple myeloma in human bone marrow trephine biopsy specimens with spatial transcriptomics

Blood

IF23.1

2025-07-14

OAAI

Raymond K. H. Yip; Jeremy Er; Lei Qin; Quoc Hoang Nguyen; Allan Motyer; Joel S. Rimes; Amanda Light; Ruvimbo D. Mishi; Ling Ling; Casey J. A. Anttila; Ellen Tsui; Daniela Amann-Zalcenstein; Mark R. Dowling; Kelly L. Rogers; Rory Bowden; Yunshun Chen; Simon J. Harrison; Edwin D. Hawkins

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Short-Term Severe Energy Restriction Promotes Molecular Health and Reverses Aging Signatures in Adults With Prediabetes in the PREVIEW Study

Aging Cell

IF7.1

2025-06-16

OAAI

Maria Lastra Cagigas; Andrius Masedunskas; Yao Lin; Samantha J. Emery-Corbin; Jumana M. Yousef; Laura F. Dagley; Sam Olechnowicz; Rory Bowden

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TIRE-seq simplifies transcriptomics via integrated RNA capture and library preparation

SCIENTIFIC REPORTS

IF3.9

2025-05-02

OAAI

O'Keeffe, Piper; Nouri, Yasmin; Saw, Hui Shi; Moore, Zachery; Baldwin, Tracey M.; Olechnowicz, Sam W. Z.; Jabbari, Jafar S.; Squire, David McG; Leslie, Stephen; Wang, Changqing; You, Yupei; Ritchie, Matthew E.; Cross, Ryan S.; Jenkins, Misty R.; Audiger, Cindy; Naik, Shalin H.; Whittle, James R.; Freytag, Saskia; Best, Sarah A.; Hickey, Peter F.; Amann-Zalcenstein, Daniela; Bowden, Rory; Brown, Daniel V.

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Benchmarking spatial transcriptomics technologies with the multi-sample SpatialBenchVisium dataset

GENOME BIOLOGY

IF9.4

2025-03-28

OAAI

Du, Mei R. M.; Wang, Changqing; Law, Charity W.; Amann-Zalcenstein, Daniela; Anttila, Casey J. A.; Ling, Ling; Hickey, Peter F.; Sargeant, Callum J.; Chen, Yunshun; Ioannidis, Lisa J.; Rajasekhar, Pradeep; Yip, Raymond K. H.; Rogers, Kelly L.; Hansen, Diana S.; Bowden, Rory; Ritchie, Matthew E.

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A necroptotic-to-apoptotic signaling axis underlies inflammatory bowel disease

JOURNAL OF CROHNS & COLITIS

IF8.7

2025-01-22

PREAI

Al-Ani, A.; Pang, J.; Patel, K.; Young, S. N.; Kong, I; Chen, J. J.; Barrios, M.; Rickard, J.; Chen, S.; Foroughi, S.; Cawthorne, W.; Jacobsen, A.; Jois, A.; Weir, A.; Whitehead, L.; Rajasekhar, P.; Horne, C.; Azeez, I; Zhang, Y.; Sieber, O.; Spelman, T.; Giulino-Roth, L.; Hawkins, E.; Rogers, K.; Bowden, R.; Nicholson, S.; Lawlor, K.; Samson, A. L.; Vince, J. E.; Murphy, J. M.; Christensen, B.

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An optimized protocol for quality control of gene therapy vectors using nanopore direct RNA sequencing

GENOME RESEARCH

IF5.5

2024-10-28

PREAI

Zeglinski, Kathleen; Montellese, Christian; Ritchie, Matthew E.; Alhamdoosh, Monther; Vonarburg, Cedric; Bowden, Rory; Jordi, Monika; Gouil, Quentin; Aeschimann, Florian; Hsu, Arthur

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Characterising the molecular epidemiology of human parechovirus in young infants in the UK and Canada

JOURNAL OF CLINICAL VIROLOGY

IF3.4

2024-10-01

OAAI

Kadambari, Seilesh; Harvala, Heli; Nguyen, Dung; Sadarangani, Manish; Martin, Natalie; Al-Rawahi, Ghada N.; Sekirov, Inna; Defres, Sylviane; Solomon, Tom; Golubchik, Tanya; Bowden, Rory; Pollard, Andrew; Simmonds, Peter

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Community use of oral antibiotics transiently reprofiles the intestinal microbiome in young Bangladeshi children

NATURE COMMUNICATIONS

IF15.7

2024-08-14

OAAI

Baldi, Andrew; Braat, Sabine; Hasan, Mohammed Imrul; Bennett, Cavan; Barrios, Marilou; Jones, Naomi; Moir-Meyer, Gemma; Azeez, Imadh Abdul; Wilcox, Stephen; Bhuiyan, Mohammad Saiful Alam; Ataide, Ricardo; Clucas, Danielle; Harrison, Leonard C.; El Arifeen, Shams; Bowden, Rory; Biggs, Beverley-Ann; Jex, Aaron; Pasricha, Sant-Rayn

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An immunohistochemical atlas of necroptotic pathway expression

EMBO MOLECULAR MEDICINE

IF8.3

2024-05-15

OAAI

Chiou, Shene; Al-Ani, Aysha H.; Pan, Yi; Patel, Komal M.; Kong, Isabella Y.; Whitehead, Lachlan W.; Light, Amanda; Young, Samuel N.; Barrios, Marilou; Sargeant, Callum; Rajasekhar, Pradeep; Zhu, Leah; Hempel, Anne; Lin, Ann; Rickard, James A.; Hall, Cathrine; Gangatirkar, Pradnya; Yip, Raymond K. H.; Cawthorne, Wayne; Jacobsen, Annette, V; Horne, Christopher R.; Martin, Katherine R.; Ioannidis, Lisa J.; Hansen, Diana S.; Day, Jessica; Wicks, Ian P.; Law, Charity; Ritchie, Matthew E.; Bowden, Rory; Hildebrand, Joanne M.; O'Reilly, Lorraine A.; Silke, John; Giulino-Roth, Lisa; Tsui, Ellen; Rogers, Kelly L.; Hawkins, Edwin D.; Christensen, Britt; Murphy, James M.; Samson, Andre L.

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Targeted metagenomics reveals association between severity and pathogen co-detection in infants with respiratory syncytial virus

NATURE COMMUNICATIONS

IF15.7

2024-03-16

OAAI

Lin, Gu-Lung; Drysdale, Simon B.; Snape, Matthew D.; O'Connor, Daniel; Brown, Anthony; MacIntyre-Cockett, George; Mellado-Gomez, Esther; de Cesare, Mariateresa; Ansari, M. Azim; Bonsall, David; Bray, James E.; Jolley, Keith A.; Bowden, Rory; Aerssens, Jeroen; Bont, Louis; Openshaw, Peter J. M.; Martinon-Torres, Federico; Nair, Harish; Golubchik, Tanya; Pollard, Andrew J.

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A risk-reward examination of sample multiplexing reagents for single cell RNA-Seq

GENOMICS

IF3

2024-03-01

OAAI

Brown, Daniel, V; Anttila, Casey J. A.; Ling, Ling; Grave, Patrick; Baldwin, Tracey M.; Munnings, Ryan; Farchione, Anthony J.; Bryant, Vanessa L.; Dunstone, Amelia; Biben, Christine; Taoudi, Samir; Weber, Tom S.; Naik, Shalin H.; Hadla, Anthony; Barker, Holly E.; Vandenberg, Cassandra J.; Dall, Genevieve; Scott, Clare L.; Moore, Zachery; Whittle, James R.; Freytag, Saskia; Best, Sarah A.; Papenfussa, Anthony T.; Olechnowicza, Sam W. Z.; Macrailda, Sarah E.; Wilcox, Stephen; Hickey, Peter F.; Amann-Zalcenstein, Daniela; Bowden, Rory

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Phylogenetic Analysis of Hepatitis C Virus Infections in a Large Belgian Cohort Using Next-Generation Sequencing of Full-Length Genomes

VIRUSES-BASEL

IF3.5

2023-12-08

OAAI

Christensen, Kasper T.; Pierard, Florian; Bonsall, David; Bowden, Rory; Barnes, Eleanor; Florence, Eric; Ansari, M. Azim; Nguyen, Dung; de Cesare, Mariateresa; Nevens, Frederik; Robaeys, Geert; Schrooten, Yoeri; Busschots, Dana; Simmonds, Peter; Vandamme, Anne-Mieke; Van Wijngaerden, Eric; Dierckx, Tim; Cuypers, Lize; Van Laethem, Kristel

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Validation of an HIV whole genome sequencing method for HIV drug resistance testing in an Australian clinical microbiology laboratory

JOURNAL OF MEDICAL VIROLOGY

IF4.6

2023-12-05

OAAI

Jenkins, Frances; Le, Thomas; Farhat, Rima; Pinto, Angie; Anzari, Azim; Bonsall, David; Golubchik, Tanya; Bowden, Rory; Lee, Frederick J.; van Hal, Sebastiaan J.

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scPipe: an extended preprocessing pipeline for comprehensive single-cell ATAC-Seq data integration in R/Bioconductor

genomics proteomics bioinformatics

IF2.8

2023-11-30

OAAI

Amarasinghe, Shanika L.; Yang, Phil; Voogd, Oliver; Yang, Haoyu; Du, Mei R. M.; Su, Shian; Brown, Daniel, V; Jabbari, Jafar S.; Bowden, Rory; Ritchie, Matthew E.

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Benchmarking long-read RNA-sequencing analysis tools using in silico mixtures

NATURE METHODS

IF32.1

2023-10-02

OAAI

Dong, Xueyi; Du, Mei R. M.; Gouil, Quentin; Tian, Luyi; Jabbari, Jafar S.; Bowden, Rory; Baldoni, Pedro L.; Chen, Yunshun; Smyth, Gordon K.; Amarasinghe, Shanika L.; Law, Charity W.; Ritchie, Matthew E.

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Actinobacillus pleuropneumoniae encodes multiple phase-variable DNA methyltransferases that control distinct phasevarions

NUCLEIC ACIDS RESEARCH

IF13.1

2023-02-25

OAAI

Nahar, Nusrat; Tram, Greg; Jen, Freda E-C; Phillips, Zachary N.; Weinert, Lucy A.; Bosse, Janine T.; Jabbari, Jafar S.; Gouil, Quentin; Du, Mei R. M.; Ritchie, Matthew E.; Bowden, Rory; Langford, Paul R.; Tucker, Alexander W.; Jennings, Michael P.; Turni, Conny; Blackall, Patrick J.; Atack, John M.

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Research Directions