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Michael Reich

Broad Institute

33H-index
111Paper Count
3.1WCitation Count
Published Papers 40
Publication Date
AmpliconSuite: an end-to-end workflow for analyzing focal amplifications in cancer genomes
err2026-10-16
err0
errOAAI
errJens Luebeck; Ted Liefeld; Ivy Tsz-Lo Wong; Edwin Huang; Forrest Kim; Bhargavi Dameracharla; Michael Chan; Rohil Ahuja; Kyra Fetter; Dhruv Khatri; Kaiyuan Zhu; Thorin Tabor; Daniel Schreyer; Gino Prasad; Aditi Gnanasekar; Siavash Raeisi Dehkordi; Simone Spandau; Michał Adamaszek; Rishaan Kenkre; Tushar Agashe; Devika Torvi; Mădălina Giurgiu-Kraljič; Soyeon Kim; Hoon Kim; Peter Bailey; Roel G. W. Verhaak; Viraj Deshpande; Michael Reich; Paul S. Mischel; Jill P. Mesirov; Vineet Bafna
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MULTI-OMICS AND FUNCTIONAL PRECISION MEDICINE FOR NEWLY DIAGNOSED AND RECURRENT PEDIATRIC CENTRAL NERVOUS SYSTEM TUMORS
err2024-06-18
err0
errOAAI
errCrawford, John R.; Lo, Yan Yuen; Pagadala, Meghana S.; Chapman, Owen S.; Sridhar, Sunita; Juarez, Edwin F.; Tzaridis, Theophilos; Chau, Lianne Q.; Wang, Jun; Eisemann, Tanja; Masihi, Meher Beigi; Chambers, Kendall R.; Dixit, Deobrat; Koubourli, Daphne; Larson, Jon D.; Guidugli, Lucia; Hammer, Monia; Wong, Terence; Abdullaev, Zied; Quezado, Martha; Martins, Timothy J.; Reich, Michael; Sears, Timothy; Hobbs, Charlotte; Kingsmore, Stephen F.; Levy, Michael L.; Gonda, David; Malicki, Denise M.; Snuderl, Matija; Becker, Pamela S.; Tamayo, Pablo; Elster, Jennifer D.; Aldape, Kenneth; Carter, Hannah; Paul, Megan R.; Mesirov, Jill P.; Chavez, Lukas; Wechsler-Reya, Robert J.
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The GenePattern ecosystem for cancer bioinformatics
err2024-03-22
err0
PREAI
errReich, Michael M.; Tabor, Thorin; Liefeld, John; Huang, Edwin; Kim, Forrest; Mesirov, Jill P.
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Inferring cellular and molecular processes in single-cell data with non-negative matrix factorization using Python, R and GenePattern Notebook implementations of CoGAPS
err2023-11-21
err3
errOAAI
errJohnson, Jeanette A. I.; Tsang, Ashley P.; Mitchell, Jacob T.; Zhou, David L.; Bowden, Julia; Davis-Marcisak, Emily; Sherman, Thomas; Liefeld, Ted; Loth, Melanie; Goff, Loyal A.; Zimmerman, Jacquelyn W.; Kinny-Koester, Ben; Jaffee, Elizabeth M.; Tamayo, Pablo; Mesirov, Jill P.; Reich, Michael; Fertig, Elana J.; Stein-O'Brien, Genevieve L.
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Genomics to Notebook (g2nb): Extending the electronic notebook to address the needs of cancer bioinformatics
err2023-04-04
err0
PREAI
errReich, Michael M.; Tabor, Thorin; Liefeld, John; Joshi, Jayadev; Kim, Forrest; Thorvaldsdottir, Helga; Blankenberg, Daniel; Mesirov, Jill P.
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Imaging-AMARETTO: An Imaging Genomics Software Tool to Interrogate Multiomics Networks for Relevance to Radiography and Histopathology Imaging Biomarkers of Clinical Outcomes
err2020-11-01
err9
errOAAI
errGevaert, Olivier; Nabian, Mohsen; Bakr, Shaimaa; Everaert, Celine; Shinde, Jayendra; Manukyan, Artur; Liefeld, Ted; Tabor, Thorin; Xu, Jishu; Lupberger, Joachim; Haas, Brian J.; Baumert, Thomas F.; Hernaez, Mikel; Reich, Michael; Quintana, Francisco J.; Uhlmann, Erik J.; Krichevsky, Anna M.; Mesirov, Jill P.; Carey, Vincent; Pochet, Nathalie
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GenePattern Notebook: An integrative analytical environment for cancer research
err2020-08-15
err0
PREAI
errReich, Michael M.; Tabor, Thorin; Liefeld, Ted; Juarez, Edwin; Hill, Barbara; Thorvaldsdottir, Helga; Tamayo, Pablo; Mesirov, Jill P.
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The GenePattern Notebook environment for reproducible cancer research
err2019-07-01
err0
PREAI
errReich, Michael M.; Tabor, Thorin T.; Liefeld, Ted; Hill, Barbara; Thorvaldsdottir, Helga; Mesirov, Jill P.
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The GenePattern Notebook environment for reproducible cancer research
err2018-07-01
err0
PREAI
errReich, Michael M.; Tabor, Thorin T.; Liefeld, Ted; Hill, Barbara; Thorvaldsdottir, Helga; Mesirov, Jill P.
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The GenePattern Notebook Environment
err2017-08-01
err23
errOAAI
errReich, Michael; Tabor, Thorin; Liefeld, Ted; Thorvaldsdottir, Helga; Hill, Barbara; Tamayo, Pablo; Mesirov, Jill P.
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GenePattern Notebook: an environment for reproducible cancer research
err2017-07-01
err0
PREAI
errReich, Michael M.; Tabor, Thorin T.; Liefeld, Ted; Hill, Barbara; Thorvaldsdottir, Helga; Mesirov, Jill P.
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GenePattern Notebooks: an integrative analytical environment for cancer research
err2016-07-15
err0
PREAI
errReich, Michael M.; Tabor, Thorin; Liefeld, John T.; Carr, Peter; Hill, Barbara; Nazaire, Marc-Danie; Eby, David; Thorvaldsdottir, Helga; Tamayo, Pablo; Mesirov, Jill P.
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NeuCode Proteomics Reveals Bap1 Regulation of Metabolism
err2016-07-01
err65
errOAAI
errBaughman, Joshua M.; Rose, Christopher M.; Kolumam, Ganesh; Webster, Joshua D.; Wilkerson, Emily M.; Merrill, Anna E.; Rhoads, Timothy W.; Noubade, Rajkumar; Katavolos, Paula; Lesch, Justin; Stapleton, Donald S.; Rabaglia, Mary E.; Schueler, Kathy L.; Asuncion, Raymond; Domeyer, Melanie; Zavala-Solorio, Jose; Reich, Michael; DeVoss, Jason; Keller, Mark P.; Attie, Alan D.; Hebert, Alexander S.; Westphall, Michael S.; Coon, Joshua J.; Kirkpatrick, Donald S.; Dey, Anwesha
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Integrative genomic analysis by interoperation of bioinformatics tools in GenomeSpace
err2016-01-18
err34
errOAAI
errQu, Kun; Garamszegi, Sara; Wu, Felix; Thorvaldsdottir, Helga; Liefeld, Ted; Ocana, Marco; Borges-Rivera, Diego; Pochet, Nathalie; Robinson, James T.; Demchak, Barry; Hull, Tim; Ben-Artzi, Gil; Blankenberg, Daniel; Barber, Galt P.; Lee, Brian T.; Kuhn, Robert M.; Nekrutenko, Anton; Segal, Eran; Ideker, Trey; Reich, Michael; Regev, Aviv; Chang, Howard Y.; Mesirov, Jill P.
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GenomeSpace: An environment for frictionless bioinformatics
err2014-10-01
err0
PREAI
errReich, Michael M.; Liefeld, John; Ocana, Marco; Jang, Donkeung; Robinson, James; Carr, Peter; Hill, Barbara; Tabor, Thorin; Thorvaldsdottir, Helga; Regev, Aviv; Mesirov, Jill P.
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Development of a consumer product ingredient database for chemical exposure screening and prioritization
err2014-03-01
err77
PREAI
errGoldsmith, M. -R.; Grulke, C. M.; Brooks, R. D.; Transue, T. R.; Tan, Y. M.; Frame, A.; Egeghy, P. P.; Edwards, R.; Chang, D. T.; Tornero-Velez, R.; Isaacs, K.; Wang, A.; Johnson, J.; Holm, K.; Reich, M.; Mitchell, J.; Vallero, D. A.; Phillips, L.; Phillips, M.; Wambaugh, J. F.; Judson, R. S.; Buckley, T. J.; Dary, C. C.
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GenomeSpace: an environment for frictionless bioinformatics.
err2013-04-01
err0
PREAI
errReich, Michael; Liefeld, John; Thorvaldsdottir, Helga; Ocana, Marco; Tabor, Thorin; Jang, D. K.; Mesirov, Jill P.
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Cathepsin S dominates autoantigen processing in human thymic dendritic cells
err2012-06-01
err32
PREAI
errStoeckle, Christina; Quecke, Paula; Rueckrich, Thomas; Burster, Timo; Reich, Michael; Weber, Ekkehard; Kalbacher, Hubert; Driessen, Christoph; Melms, Arthur; Tolosa, Eva
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GenomeSpace: An environment for frictionless bioinformatics
err2012-04-01
err0
PREAI
errReich, Michael; Liefeld, John; Thorvaldsdottir, Helga; Ocana, Marco; Polk, Eliot; Jang, D. K.; Mesirov, Jill
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