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Arjun Raj

University of Pennsylvania

63H-index
308Paper Count
2.6WCitation Count
Published Papers 86
Publication Date
Human macrophages encode stimulus-specific information of prior exposures through trained immunity
err2026-06-19
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PREAI
errAoife O’Farrell; Zijian Niu; Jingxin Li; Laura C. Van Eyndhoven; Kavitha Sarma; Arjun Raj
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SpaceBar enables single-cell-resolution clone tracing with imaging-based spatial transcriptomics
err2025-12-18
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PREAI
errGrant Kinsler; Caitlin Fagan; Haiyin Li; Jessica Kaster; Maggie Dunne; Robert J. Vander Velde; Ryan H. Boe; Sydney Shaffer; Meenhard Herlyn; Arjun Raj; Yael Heyman
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NimbusImage: a cloud-computing platform for image analysis
err2025-11-20
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PREAI
errZijian Niu; Thibault Bruyère; David Manthey; Jingxin Li; Aoife O’Farrell; Arjun Raj
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Single-cell susceptibility to viral infection is driven by variable cell states
errCell
IF42.5
err2025-11-14
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PREAI
errSam Reffsin; Jesse Miller; Kasirajan Ayyanathan; Margaret C. Dunagin; Yael Heyman; Naveen Jain; David C. Schultz; Sara Cherry; Arjun Raj
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Glucocorticoid treatment and new-onset hyperglycaemia and diabetes in people living with chronic obstructive pulmonary disease: A systematic review and meta-analysis
err2024-12-06
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PREAI
errGolubic, Rajna; Mumbole, Hudson; Ismail, Mouhamad Hussein; Choo, Alwyn; Baker, Olivia; Atha, Karyna; Mei, Sarah Chew Sue; Raj, Arjun; Anand, Preethu; Aung, Nwe Oo; Kumar, Niraj S.; Nahar, Tulika; Coleman, Ruth L.; Tomlinson, Jeremy W.; Rahman, Najib; Caleyachetty, Rishi; Adler, Amanda
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Post-transcriptional splicing can occur in a slow-moving zone around the gene
err2024-04-05
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errOAAI
errCote, Allison; O'Farrell, Aoife; Dardani, Ian; Dunagin, Margaret; Cote, Chris; Wan, Yihan; Bayatpour, Sareh; Drexler, Heather L.; Alexander, Katherine A.; Chen, Fei; Wassie, Asmamaw T.; Patel, Rohan; Pham, Kenneth; Boyden, Edward S.; Berger, Shelly; Phillips-Cremins, Jennifer; Churchman, L. Stirling; Raj, Arjun
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Retrospective identification of cell-intrinsic factors that mark pluripotency potential in rare somatic cells
err2024-02-01
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errOAAI
errJain, Naveen; Goyal, Yogesh; Dunagin, Margaret C.; Cote, Christopher J.; Mellis, Ian A.; Emert, Benjamin; Jiang, Connie L.; Dardani, Ian P.; Reffsin, Sam; Arnett, Miles; Yang, Wenli; Raj, Arjun
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A subpopulation of lipogenic brown adipocytes drives thermogenic memory
err2023-10-02
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errOAAI
errLundgren, Patrick; Sharma, Prateek V.; Dohnalova, Lenka; Coleman, Kyle; Uhr, Giulia T.; Kircher, Susanna; Litichevskiy, Lev; Bahnsen, Klaas; Descamps, Helene C.; Demetriadou, Christina; Chan, Jacqueline; Chellappa, Karthikeyani; Cox, Timothy O.; Heyman, Yael; Pather, Sarshan R.; Shoffler, Clarissa; Petucci, Christopher; Shalem, Ophir; Raj, Arjun; Baur, Joseph A.; Snyder, Nathaniel W.; Wellen, Kathryn E.; Levy, Maayan; Seale, Patrick; Li, Mingyao; Thaiss, Christoph A.
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In-speck-ting the nucleus: Nuclear speckles are a critical layer of gene regulation that predict outcomes in clear cell renal cell carcinoma.
err2023-08-15
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PREAI
errAlexander, Katherine A.; Yu, Ruofan; Faunce, Christine; Skuli, Nicolas; Coffey, Nathan; Nguyen, Son; Biddle, Nicholas; Li, Catherine; Joyce, Eric; Raj, Arjun; Simon, M. Celeste; Berger, Shelley
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Real-world study of durvalumab and chemotherapy in Indian patients with advanced biliary tract cancers
err2023-06-01
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errOAAI
errMuddu, V.; Shah, A.; Raj, A.; Bahl, A.; Thirumalairaj, R.; Ghosh, J.; Ostwal, V.; Rajappa, S.; Vora, A.; Lavingia, V.; Sharma, A.; Khan, A.; Rohatgi, N.; Mahajan, M.; Chandrakanth, M.; Ramaswamy, A.
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ClonoCluster: A method for using clonal origin to inform transcriptome clustering
err2023-02-01
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errOAAI
errRichman, Lee P.; Goyal, Yogesh; Jiang, Connie L.; Raj, Arjun
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CTCF blocks antisense transcription initiation at divergent promoters
err2022-11-11
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errOAAI
errLuan, Jing; Vermunt, Marit W.; Syrett, Camille M.; Cote, Allison; Tome, Jacob M.; Zhang, Haoyue; Huang, Anran; Luppino, Jennifer M.; Keller, Cheryl A.; Giardine, Belinda M.; Zhang, Shiping; Dunagin, Margaret C.; Zhang, Zhe; Joyce, Eric F.; Lis, John T.; Raj, Arjun; Hardison, Ross C.; Blobel, Gerd A.
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ClampFISH 2.0 enables rapid, scalable amplified RNA detection in situ
err2022-10-24
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errOAAI
errDardani, Ian; Emert, Benjamin L.; Goyal, Yogesh; Jiang, Connie L.; Kaur, Amanpreet; Lee, Jasmine; Rouhanifard, Sara H.; Alicea, Gretchen M.; Fane, Mitchell E.; Xiao, Min; Herlyn, Meenhard; Weeraratna, Ashani T.; Raj, Arjun
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Systematically quantifying morphological features reveals constraints on organoid phenotypes br
err2022-07-01
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errOAAI
errBeck, Lauren E.; Lee, Jasmine; Cote, Christopher; Dunagin, Margaret C.; Lukonin, Ilya; Salla, Nikkita; Chang, Marcello K.; Hughes, Alex J.; Mornin, Joseph D.; Gartner, Zev J.; Liberali, Prisca; Raj, Arjun
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Cell type determination for cardiac differentiation occurs soon after seeding of human-induced pluripotent stem cells
err2022-04-05
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errOAAI
errJiang, Connie L.; Goyal, Yogesh; Jain, Naveen; Wang, Qiaohong; Truitt, Rachel E.; Cote, Allison J.; Emert, Benjamin; Mellis, Ian A.; Kiani, Karun; Yang, Wenli; Jain, Rajan; Raj, Arjun
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Implementation of dapagliflozin as adjunctive therapy in type 1 diabetes: A single centre real-world experience
err2021-12-16
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errOAAI
errRaj, Arjun; Bansiya, Vishakha; Evans, Mark L.; Boughton, Charlotte K.
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Single cell biology-a Keystone Symposia report
err2021-10-03
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errOAAI
errCable, Jennifer; Elowitz, Michael B.; Domingos, Ana I.; Habib, Naomi; Itzkovitz, Shalev; Hamidzada, Homaira; Balzer, Michael S.; Yanai, Itai; Liberali, Prisca; Whited, Jessica; Streets, Aaron; Cai, Long; Stergachis, Andrew B.; Hong, Clarice Kit Yee; Keren, Leeat; Guilliams, Martin; Alon, Uri; Shalek, Alex K.; Hamel, Regan; Pfau, Sarah J.; Raj, Arjun; Quake, Stephen R.; Zhang, Nancy R.; Fan, Jean; Trapnell, Cole; Wang, Bo; Greenwald, Noah F.; Vento-Tormo, Roser; Santos, Silvia D. M.; Spencer, Sabrina L.; Garcia, Hernan G.; Arekatla, Geethika; Gaiti, Federico; Arbel-Goren, Rinat; Rulands, Steffen; Junker, Jan Philipp; Klein, Allon M.; Morris, Samantha A.; Murray, John I.; Galloway, Kate E.; Ratz, Michael; Romeike, Merrit
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