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Frank M. Aarestrup

Technical University of Denmark

112H-index
769Paper Count
6.2WCitation Count
Published Papers 256
Publication Date
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Author Correction: Geographics and bacterial networks differently shape the acquired and latent global sewage resistomes
errNature Communications
IF15.7
err2026-07-01
err0
errOAAI
errHannah-Marie Martiny; Patrick Munk; Alessandro Fuschi; Ágnes Becsei; Nikiforos Pyrounakis; Christian Brinch; D. G. Joakim Larsson; Marion Koopmans; Daniel Remondini; István Csabai; Frank M. Aarestrup
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The role of whole genome sequencing in antimicrobial susceptibility prediction of bacteria: 2025 update from the EUCAST Subcommittee
errClinical Microbiology and Infection
IF8.5
err2026-05-15
err0
PREAI
errØrjan Samuelsen; Carla López-Causapé; Frank Møller Aarestrup; Valeria Bortolaia; Michael S.M. Brouwer; Rafael Cantón; Adrian Egli; Yonatan H. Grad; Axel Hamprecht; Susanne Haussler; Kathryn E. Holt; Katie L. Hopkins; Benjamin P. Howden; Katy Jeannot; Gunnar Kahlmeter; Claudio U. Köser; Amy J. Mathers; Thierry Naas; Spyros Pournaras; Etienne Ruppé
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Metagenomics provides broad detection of pathogens, antimicrobial resistance, and virulence genes in pig diarrhoea and complement conventional methods
errAnimal Microbiome
IF4.4
err2026-04-28
err0
errOAAI
errMirena Ivanova; Birgitta Svensmark; Emilie Egholm Bruun Jensen; Frank M. Aarestrup; Håkan Vigre; Saria Otani
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errSave
Genomic Diversity of Human Adenoviruses in Tanzanian Children Under Five: Insights into F40, F41, B, and Rare A18 Genotypes
errVirology
IF2.4
err2026-01-23
err0
errOAAI
errMariana J. Shayo; Davis Kuchaka; Melkiory Beti; Patrick Kimu; Boaz Wadugu; Emilie E.B. Jensen; Happiness Kumburu; Paul Kazyoba; Mohamed Ali; Philip T.L.C. Clausen; Florida Muro; Blandina T. Mmbaga; Michael Alifrangis; Frank M. Aarestrup; Tolbert Sonda
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errSave
A comprehensive database for biological data derived from sewage in five European cities
errDatabase-The Journal of Biological Databases and Curation
IF3.6
err2026-01-01
err0
PREAI
errBecsei, Agnes; Munk, Patrick; Fuschi, Alessandro; Otani, Saria; Steger, Jozsef; Visontai, David; Papp, Krisztian; Brinch, Christian; Kant, Ravi; Weinstein, Ilya; Vapalahti, Olli; De graaf, Miranda; Schapendonk, Claudia M. E.; Roelfsema, Jeroen; Van den beld, Maaike; Pijnacker, Roan; Franz, Eelco; Alba, Patricia; Battisti, Antonio; De cesare, Alessandra; Indio, Valentina; Troja, Fulvia; Sironen, Tarja; Oliveri, Chiara; Pasquali, Frederique; Liachko, Ivan; Auch, Benjamin; O'cathail, Colman; Banyai, Krisztian; Mako, Magdolna; Pollner, Peter; Koopmans, Marion; Csabai, Istvan; Remondini, Daniel; Aarestrup, Frank M.
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errSave
Acinetobacter enrichment shapes composition and function of the bacterial microbiota of field-grown tomato plants
errmSphere
IF3.1
err2026-01-01
err1
PREAI
errRobertson, Senga; Mosca, Alexandros; Ashraf, Saira; Corral, Aileen; Alegria Terrazas, Rodrigo; Arnton, Catherine; Thorpe, Peter; Morris, Jenny; Hedley, Pete E.; Babbi, Giulia; Savojardo, Castrense; Martelli, Pier Luigi; Moller, Frederik Duus; Nielsen, Hanne Norgaard; Leekitcharoenphon, Pimlapas; Aarestrup, Frank M.; Halder, Rashi; Laczny, Cedric C.; Wilmes, Paul; Pietrantonio, Laura; Di Cillo, Pardo; Catara, Vittoria; Abbott, James; Bulgarelli, Davide
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errSave
Sociodemographic and Health Factors Are Associated with Antimicrobial Resistance across Eight States in the United States
errEnvironmental Science & Technology
IF11.3
err2025-12-31
err0
errOAAI
errPatrick Murigu Kamau Njage; Ágnes Becsei; Ana Rita Pinheiro Marques; Beatrice Wamuyu Muchiri; Jolene Lee Masters Pedersen; Saria Otani; Baptiste Jacques Philippe Avot; Amy Pruden; Jeanette Calarco; Valerie Harwood; John Scott Meschke; Raul Gonzalez; Emanuele Sozzi; Mark Sobsey; Patrick McNamara; Nicola Beck; Kelly Clark; Gregory Ballash; Dixie Mollenkopf; Thomas Wittum; Bruce Smith; Ayella Maile-Moskowitz; Sanghoon Kang; Drew Capone; Frank M. Aarestrup
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errSave
Contrasting pH optima of β-lactamases CTX-M and CMY influence Escherichia coli fitness and resistance ecology
errApplied and Environmental Microbiology
IF3.7
err2025-12-01
err0
PREAI
errAnbo, Mikkel; Otani, Saria; Ivanova, Mirena; Nielsen, Hanne Norgaard; Jensen, Jacob Dyring; Svendsen, Christina Aaby; Pang, Chengfang; Aarestrup, Frank M.
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errSave
Tanzanian goat gut microbiomes adapt to roadside pollutants and environmental stressors
errMicrobiology Spectrum
IF3.8
err2025-12-01
err0
PREAI
errJensen, Emilie Egholm Bruun; Jespersen, Marie Louise; Svendsen, Christina Aaby; Sonda, Tolbert; Otani, Saria; Aarestrup, Frank M.
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errSave
Unveiling the global urban virome through wastewater metagenomics
errNature Communications
IF15.7
err2025-11-28
err0
errOAAI
errNathalie Worp; David F. Nieuwenhuijse; Ray W. Izquierdo-Lara; Claudia M. E. Schapendonk; Christian Brinch; Emilie Egholm Bruun Jensen; Patrick Munk; Rene S. Hendriksen; Frank Aarestrup; Bas B. Oude Munnink; Marion P. G. Koopmans; Miranda de Graaf
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errSave
Artificial intelligence and spillover prediction: aligning innovation with empirical reality in One Health surveillance – Authors' reply
errThe Lancet Infectious Diseases
IF31
err2025-11-26
err0
PREAI
errFrank Aarestrup; Marion Koopmans
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errSave
Geographics and bacterial networks differently shape the acquired and latent global sewage resistomes
errNature Communications
IF15.7
err2025-11-21
err0
errOAAI
errHannah-Marie Martiny; Patrick Munk; Alessandro Fuschi; Ágnes Becsei; Nikiforos Pyrounakis; Christian Brinch; D. G. Joakim Larsson; Marion Koopmans; Daniel Remondini; István Csabai; Frank M. Aarestrup
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errSave
Genomic monitoring and tracking of mpox virus clade Ib in Burundi between july to september 2024
errCommunications Medicine
IF6.3
err2025-11-21
err0
errOAAI
errNéhémie Nzoyikorera; Leonard Schuele; David F. Nieuwenhuijse; Cassien Nduwimana; Théogène Ihorimbere; Denis Niyomwungere; Hayley Cassidy; Marjan Boter; Celestin Nibogora; Armstrong Ndihokubwayo; Alexis Niyomwungere; Dionis Nizigiyimana; Marie Noelle Uwineza; Idrissa Diawara; Saria Otani; Frank M. Aarestrup; Marion Koopmans; Joseph Nyandwi; Bas B. Oude Munnink
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errSave
Antibiotic resistance selection and deselection in municipal wastewater from 47 countries
errNature Communications
IF15.7
err2025-11-03
err0
errOAAI
errZhuofeng Yu; Declan A. Gray; Jerker Fick; Noel Waters; Richard Lindberg; Roman Grabic; Mats Tysklind; Mutshiene Deogratias Ekwanzala; Hannah-Marie Martiny; Carl-Fredrik Flach; Frank M. Aarestrup; D. G. Joakim Larsson
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errSave
Aquaculture shapes antibiotic resistance in Mediterranean gilthead sea bream farming: From hatcheries to offshore cages
errAQUACULTURE
IF3.9
err2025-10-01
err0
errOAAI
errBasili, Marco; Nikouli, Eleni; Kormas, Konstantinos A.; Luna, Gian Marco; Rodriguez-Ruano, Sonia M.; Sanz, Yolanda; Candela, Marco; Quero, Grazia Marina; Aarestrup, Frank M.; Leekitcharoenphon, Pimlapas
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errSave
Artificial intelligence and One Health: potential for spillover prediction?
errThe Lancet Infectious Diseases
IF0
err2025-09-16
err0
PREAI
errMarion Koopmans; Istvan Csabai; Daniel Remondini; Emma Snary; Frank Aarestrup
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errSave
Assembly-free typing of Nanopore and Illumina data through proximity scoring with KMA
errNAR Genomics and Bioinformatics
IF2.8
err2025-09-01
err0
errOAAI
errPhilip T L C Clausen; Malte B Hallgren; Søren Overballe-Petersen; Vanessa R Marcelino; Henrik Hasman; Frank M Aarestrup
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errSave
GWAS Study Applied to Phenotypically Slow Growth Strains of Listeria monocytogenes Workflow and Outcome
errMicroorganisms 2025, Vol. 13, Page 2011
IF4.2
err2025-08-29
err0
errOAAI
errMaria Elisabetta De Angelis; Giovanna Alessia Robbe; Cesare Cammà; Massimo Ancora; Serena Bosica; Mattia Ferrara; Marina Torresi; Frank M. Aarestrup; Alexander Gmeiner; Narong Nuanmuang; Patrick Murigu Kamau Njage; Chiara Bravaccini; Viviana Belardo; Chiara Di Iorio; Silvia Di Zacomo; Paolo Fazii; Francesco Pomilio; Pimlapas Leekitcharoenphon
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Emergence of livestock-associated MRSA clonal complex 398 in Thailand's swine industry
errJOURNAL OF ANTIMICROBIAL CHEMOTHERAPY
IF3.6
err2025-08-01
err0
PREAI
errNarongpun, Pawarut; Chanchaithong, Pattrarat; Tanomsridachchai, Wimonrat; Nuanmuang, Narong; Thapa, Jeewan; Yamagishi, Junya; Suthienkul, Orasa; Leekitcharoenphon, Pimlapas; Aarestrup, Frank M.; Nakajima, Chie; Suzuki, Yasuhiko
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Serological evidence of clade Ib Mpox transmission by sex workers and within household in South Kivu, DRC
errNature Communications
IF15.7
err2025-08-01
err0
errOAAI
errLeandre Murhula Masirika; Luca M. Zaeck; Pacifique Ndishimye; Jean Claude Udahemuka; Saria Otani; Frank M. Aarestrup; Leonard Schuele; Babs E. Verstrepen; Scott Jones; Ashley Otter; Corine H. GeurtsvanKessel; Jean Pierre Musabyimana; Justin Bengehya Mbiribindi; Jules Minega Ndoli; Bas B. Oude Munnink; Freddy Siangoli Belesi; Marion P. G. Koopmans; Rory D. de Vries
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Research Directions

No research directions
Co-authors
Cooperation Journals
A
Andrew Rambaut
H-index: 150 · Papers: 521
C
Christian Drosten
H-index: 136 · Papers: 778
M
Marion Koopmans
H-index: 134 · Papers: 1.2K
D
Derrick W. Crook
H-index: 125 · Papers: 693
R
Ron A. M. Fouchier
H-index: 125 · Papers: 634
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