Nathan D. Olson

national institute of standards and technology

H指数:38

被引数:1.2万

个人简介

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教育背景

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工作经历

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荣誉奖项

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Meet the author: Nathan D. Olson

与作者见面：Nathan D. Olson

Cell Genomics

IF9

2026-04-080

OAAI

Characterization of subclonal variants in HG002 Genome in a Bottle reference material as a resource for benchmarking variant callers

HG002基因组参考材料中子克隆变异体的表征，作为评估变异检测算法的资源

Cell Genomics

IF9

2026-04-010

OAAI

Daniels, Camille A.; Abdulkadir, Adetola A.; Cleveland, Megan H.; McDaniel, Jennifer H.; Jaspez, David; Rubio-Rodrnguez, Luis Alberto; Munoz-Barrera, Adrian; Lorenzo-Salazar, Jose Miguel; Flores, Carlos; Yoo, Byunggil; Sahraeian, Sayed Mohammad Ebrahim; Wang, Yina; Rossi, Massimiliano; Visvanath, Arun; Murray, Lisa; Chen, Wei-Ting; Catreux, Severine; Han, James; Mehio, Rami; Parnaby, Gavin; Carroll, Andrew; Chang, Pi-Chuan; Shafin, Kishwar; Cook, Daniel; Kolesnikov, Alexey; Brambrink, Lucas; Mootor, Mohammed Faizal Eeman; Patel, Yash; Yamaguchi, Takafumi N.; Boutros, Paul C.; Sienkiewicz, Karolina; Foox, Jonathan; Mason, Christopher E.; Lajoie, Bryan R.; Ruiz-Perez, Carlos A.; Kruglyak, Semyon; Zook, Justin M.; Olson, Nathan D.

Correction: Development and extensive sequencing of a broadly-consented Genome in a Bottle matched tumor-normal pair

更正：开发和广泛测序一个得到广泛认可的“Genome in a Bottle”匹配的肿瘤-正常配对样本

Scientific Data

IF6.9

2025-08-080

OAAI

Jennifer H. McDaniel; Vaidehi Patel; Nathan D. Olson; Hua-Jun He; Zhiyong He; Kenneth D. Cole; Alexander A. Gooden; Anthony Schmitt; Kristin Sikkink; Fritz J. Sedlazeck; Harsha Doddapaneni; Shalini N. Jhangiani; Donna M. Muzny; Marie-Claude Gingras; Heer Mehta; Sairam Behera; Luis F. Paulin; Alex R. Hastie; Hung-Chun Yu; Victor Weigman; Alison Rojas; Katie Kennedy; Jamie Remington; Isai Salas-González; Mitch Sudkamp; Kelly Wiseman; Bryan R. Lajoie; Shawn Levy; Miten Jain; Stuart Akeson; Giuseppe Narzisi; Zoe Steinsnyder; Catherine Reeves; Jennifer Shelton; Sarah B. Kingan; Christine Lambert; Primo Baybayan; Aaron M. Wenger; Ian J. McLaughlin; Aaron Adamson; Christopher Kingsley; Melanie Wescott; Young Kim; Benedict Paten; Jimin Park; Ivo Violich; Karen H. Miga; Joshua Gardner; Brandy McNulty; Gail L. Rosen; Rajiv McCoy; Francesco Brundu; Erfan Sayyari; Konrad Scheffler; Sean Truong; Severine Catreux; Lesley Chapman Hannah; Doron Lipson; Hila Benjamin; Nika Iremadze; Ilya Soifer; Gat Krieger; Stephen Eacker; Mary Wood; Erin Cross; Greg Husar; Stephen Gross; Michael Vernich; Mikhail Kolmogorov; Tanveer Ahmad; Ayse G. Keskus; Asher Bryant; Francoise Thibaud-Nissen; Jonathan Trow; Jacqueline Proszynski; Jeremy Wain Hirschberg; Krista Ryon; Christopher E. Mason; Mital S. Bhakta; J. Zachary Sanborn; Elizabeth M. Munding; Justin Wagner; Chunlin Xiao; Andrew S. Liss; Justin M. Zook

The Platinum Pedigree: a long-read benchmark for genetic variants

铂金血统：一种用于遗传变异的长读基准

Nature Methods

IF32.1

2025-08-040

Zev Kronenberg; Cillian Nolan; David Porubsky; Tom Mokveld; William J. Rowell; Sangjin Lee; Egor Dolzhenko; Pi-Chuan Chang; James M. Holt; Christopher T. Saunders; Nathan D. Olson; Cody J. Steely; Sean McGee; Andrea Guarracino; Nidhi Koundinya; William T. Harvey; W. Scott Watkins; Katherine M. Munson; Kendra Hoekzema; Khi Pin Chua; Xiao Chen; Cairbre Fanslow; Christine Lambert; Harriet Dashnow; Erik Garrison; Joshua D. Smith; Peter M. Lansdorp; Justin M. Zook; Andrew Carroll; Lynn B. Jorde; Deborah W. Neklason; Aaron R. Quinlan; Evan E. Eichler; Michael A. Eberle

Development and extensive sequencing of a broadly-consented Genome in a Bottle matched tumor-normal pair

开发并广泛测序一种在Genome in a Bottle框架下获得广泛共识的匹配肿瘤-正常样本对

Scientific Data

IF6.9

2025-07-160

OAAI

Small variant benchmark from a complete assembly of X and Y chromosomes

X和Y染色体完整组装的小变异基准测试

NATURE COMMUNICATIONS

IF15.7

2025-01-080

The GIAB genomic stratifications resource for human reference genomes

人类参考基因组的GIAB基因组分层资源

NATURE COMMUNICATIONS

IF15.7

2024-10-190

OAAI

StratoMod: predicting sequencing and variant calling errors with interpretable machine learning

COMMUNICATIONS BIOLOGY

IF5.1

2024-10-131

OAAI

High-coverage nanopore sequencing of samples from the 1000 Genomes Project to build a comprehensive catalog of human genetic variation

对来自1000基因组项目的样品进行高覆盖纳米孔测序，以建立人类遗传变异的综合目录

GENOME RESEARCH

IF5.5

2024-10-027

PRE

Gustafson, Jonas A.; Gibson, Sophia B.; Damaraju, Nikhita; Zalusky, Miranda P. G.; Hoekzema, Kendra; Twesigomwe, David; Yang, Lei; Snead, Anthony A.; Richmond, Phillip A.; De Coster, Wouter; Olson, Nathan D.; Guarracino, Andrea; Li, Qiuhui; Miller, Angela L.; Goffena, Joy; Anderson, Zachary B.; Storz, Sophie H. R.; Ward, Sydney A.; Sinha, Maisha; Gonzaga-Jauregui, Claudia; Clarke, Wayne E.; Basile, Anna O.; Corvelo, Andre; Reeves, Catherine; Helland, Adrienne; Musunuri, Rajeeva Lochan; Revsine, Mahler; Patterson, Karynne E.; Paschal, Cate R.; Zakarian, Christina; Goodwin, Sara; Jensen, Tanner D.; Robb, Esther; McCombie, William Richard; Sedlazeck, Fritz J.; Zook, Justin M.; Montgomery, Stephen B.; Garrison, Erik; Kolmogorov, Mikhail; Schatz, Michael C.; McLaughlin Jr, Richard N.; Dashnow, Harriet; Zody, Michael C.; Loose, Matt; Jain, Miten; Eichler, Evan E.; Miller, Danny E.

Analysis and benchmarking of small and large genomic variants across tandem repeats

跨串联重复序列的小型和大型基因组变异的分析和基准测试

NATURE BIOTECHNOLOGY

IF41.7

2024-04-265

PRE

Continued analysis of extensive data towards Genome in a Bottle benchmarks for a new tumor normal pair

CANCER RESEARCH

IF16.6

2024-03-220

PRE

Pangenome graph construction from genome alignments with Minigraph-Cactus

用minigrap-cactus从基因组比对构建Pangenome图

NATURE BIOTECHNOLOGY

IF41.7

2023-05-1049

Hickey, Glenn; Monlong, Jean; Ebler, Jana; Novak, Adam M.; Eizenga, Jordan M.; Gao, Yan; Marschall, Tobias; Li, Heng; Paten, Benedict; Abel, Haley J.; Antonacci-Fulton, Lucinda L.; Asri, Mobin; Baid, Gunjan; Baker, Carl A.; Belyaeva, Anastasiya; Billis, Konstantinos; Bourque, Guillaume; Buonaiuto, Silvia; Carroll, Andrew; Chaisson, Mark J. P.; Chang, Pi-Chuan; Chang, Xian H.; Cheng, Haoyu; Chu, Justin; Cody, Sarah; Colonna, Vincenza; Cook, Daniel E.; Cook-Deegan, Robert M.; Cornejo, Omar E.; Diekhans, Mark; Doerr, Daniel; Ebert, Peter; Ebler, Jana; Eichler, Evan E.; Eizenga, Jordan M.; Fairley, Susan; Fedrigo, Olivier; Felsenfeld, Adam L.; Feng, Xiaowen; Fischer, Christian; Flicek, Paul; Formenti, Giulio; Frankish, Adam; Fulton, Robert S.; Gao, Yan; Garg, Shilpa; Garrison, Erik; Garrison, Nanibaa' A.; Giron, Carlos Garcia; Green, Richard E.; Groza, Cristian; Guarracino, Andrea; Haggerty, Leanne; Hall, Ira M.; Harvey, William T.; Haukness, Marina; Haussler, David; Heumos, Simon; Hickey, Glenn; Hoekzema, Kendra; Hourlier, Thibaut; Howe, Kerstin; Jain, Miten; Jarvis, Erich D.; Ji, Hanlee P.; Kenny, Eimear E.; Koenig, Barbara A.; Kolesnikov, Alexey; Korbel, Jan O.; Kordosky, Jennifer; Koren, Sergey; Lee, HoJoon; Lewis, Alexandra P.; Liao, Wen-Wei; Lu, Shuangjia; Lu, Tsung-Yu; Lucas, Julian K.; Hugo, Magalhaes; Santiago, Marco-Sola; Marijon, Pierre; Markello, Charles; Marschall, Tobias; Martin, Fergal J.; McCartney, Ann; McDaniel, Jennifer; Miga, Karen H.; Mitchell, Matthew W.; Monlong, Jean; Mountcastle, Jacquelyn; Munson, Katherine M.; Mwaniki, Moses Njagi; Nattestad, Maria; Novak, Adam M.; Nurk, Sergey; Olsen, Hugh E.; Olson, Nathan D.; Pesout, Trevor; Phillippy, Adam M.; Popejoy, Alice B.; Porubsky, David; Prins, Pjotr; Puiu, Daniela; Rautiainen, Mikko; Regier, Allison A.; Rhie, Arang; Sacco, Samuel; Sanders, Ashley D.; Schneider, Valerie A.; Schultz, Baergen, I; Shafin, Kishwar; Sibbesen, Jonas A.; Siren, Jouni; Smith, Michael W.; Sofia, Heidi J.; Abou Tayoun, Ahmad N.; Thibaud-Nissen, Francoise; Tomlinson, Chad; Tricomi, Francesca Floriana; Villani, Flavia; Vollger, Mitchell R.; Wagner, Justin; Walenz, Brian; Wang, Ting; Wood, Jonathan M. D.; Zimin, Aleksey, V; Zook, Justin M.

A draft human pangenome reference

人类pangenome参考草案

Nature

IF48.5

2023-05-100

OAAI

Wen-Wei Liao; Mobin Asri; Jana Ebler; Daniel Doerr; Marina Haukness; Glenn Hickey; Shuangjia Lu; Julian K. Lucas; Jean Monlong; Haley J. Abel; Silvia Buonaiuto; Xian H. Chang; Haoyu Cheng; Justin Chu; Vincenza Colonna; Jordan M. Eizenga; Xiaowen Feng; Christian Fischer; Robert S. Fulton; Shilpa Garg; Cristian Groza; Andrea Guarracino; William T. Harvey; Simon Heumos; Kerstin Howe; Miten Jain; Tsung-Yu Lu; Charles Markello; Fergal J. Martin; Matthew W. Mitchell; Katherine M. Munson; Moses Njagi Mwaniki; Adam M. Novak; Hugh E. Olsen; Trevor Pesout; David Porubsky; Pjotr Prins; Jonas A. Sibbesen; Jouni Sirén; Chad Tomlinson; Flavia Villani; Mitchell R. Vollger; Lucinda L. Antonacci-Fulton; Gunjan Baid; Carl A. Baker; Anastasiya Belyaeva; Konstantinos Billis; Andrew Carroll; Pi-Chuan Chang; Sarah Cody; Daniel E. Cook; Robert M. Cook-Deegan; Omar E. Cornejo; Mark Diekhans; Peter Ebert; Susan Fairley; Olivier Fedrigo; Adam L. Felsenfeld; Giulio Formenti; Adam Frankish; Yan Gao; Nanibaa’ A. Garrison; Carlos Garcia Giron; Richard E. Green; Leanne Haggerty; Kendra Hoekzema; Thibaut Hourlier; Hanlee P. Ji; Eimear E. Kenny; Barbara A. Koenig; Alexey Kolesnikov; Jan O. Korbel; Jennifer Kordosky; Sergey Koren; HoJoon Lee; Alexandra P. Lewis; Hugo Magalhães; Santiago Marco-Sola; Pierre Marijon; Ann McCartney; Jennifer McDaniel; Jacquelyn Mountcastle; Maria Nattestad; Sergey Nurk; Nathan D. Olson; Alice B. Popejoy; Daniela Puiu; Mikko Rautiainen; Allison A. Regier; Arang Rhie; Samuel Sacco; Ashley D. Sanders; Valerie A. Schneider; Baergen I. Schultz; Kishwar Shafin; Michael W. Smith; Heidi J. Sofia; Ahmad N. Abou Tayoun; Françoise Thibaud-Nissen; Francesca Floriana Tricomi; Justin Wagner; Brian Walenz; Jonathan M. D. Wood; Aleksey V. Zimin; Guillaume Bourque; Mark J. P. Chaisson; Paul Flicek; Adam M. Phillippy; Justin M. Zook; Evan E. Eichler; David Haussler; Ting Wang; Erich D. Jarvis; Karen H. Miga; Erik Garrison; Tobias Marschall; Ira M. Hall; Heng Li; Benedict Paten

Variant calling and benchmarking in an era of complete human genome sequences

完整人类基因组序列时代的变异调用和基准测试

NATURE REVIEWS GENETICS

IF52

2023-04-1434

PRE

PrecisionFDA Truth Challenge V2: Calling variants from short and long reads in difficult-to-map regions

PrecisionFDA真相挑战V2: 在难以映射的区域中从短读和长读调用变体

CELL GENOMICS

IF9

2022-05-0157

OAAI

Olson, Nathan D.; Wagner, Justin; McDaniel, Jennifer; Stephens, Sarah H.; Westreich, Samuel T.; Prasanna, Anish G.; Johanson, Elaine; Boja, Emily; Maier, Ezekiel J.; Serang, Omar; Jaspez, David; Lorenzo-Salazar, Jose M.; Munoz-Barrera, Adrian; Rubio-Rodriguez, Luis A.; Flores, Carlos; Kyriakidis, Konstantinos; Malousi, Andigoni; Shafin, Kishwar; Pesout, Trevor; Jain, Miten; Paten, Benedict; Chang, Pi-Chuan; Kolesnikov, Alexey; Nattestad, Maria; Baid, Gunjan; Goel, Sidharth; Yang, Howard; Carroll, Andrew; Eveleigh, Robert; Bourgey, Mathieu; Bourque, Guillaume; Li, Gen; Ma, ChouXian; Tang, LinQi; Du, YuanPing; Zhang, ShaoWei; Morata, Jordi; Tonda, Raul; Parra, Genis; Trotta, Jean-Remi; Brueffer, Christian; Demirkaya-Budak, Sinem; Kabakci-Zorlu, Duygu; Turgut, Deniz; Kalay, Ozem; Narci, Kubra; Arslan, Elif; Brown, Richard; Johnson, Ivan J.; Dolgoborodov, Alexey; Semenyuk, Vladimir; Jain, Amit; Tetikol, H. Serhat; Jain, Varun; Ruehle, Mike; Lajoie, Bryan; Roddey, Cooper; Catreux, Severine; Mehio, Rami; Ahsan, Mian Umair; Liu, Qian; Wang, Kai; Sahraeian, Sayed Mohammad Ebrahim; Fang, Li Tai; Mohiyuddin, Marghoob; Hung, Calvin; Jain, Chirag; Feng, Hanying; Li, Zhipan; Chen, Luoqi; Sedlazeck, Fritz J.; Zook, Justin M.

Benchmarking challenging small variants with linked and long reads

具有链接和长读取的具有挑战性的小变体的基准测试

CELL GENOMICS

IF9

2022-05-0151

OAAI

Wagner, Justin; Olson, Nathan D.; Harris, Lindsay; Khan, Ziad; Farek, Jesse; Mahmoud, Medhat; Stankovic, Ana; Kovacevic, Vladimir; Yoo, Byunggil; Miller, Neil; Rosenfeld, Jeffrey A.; Ni, Bohan; Zarate, Samantha; Kirsche, Melanie; Aganezov, Sergey; Schatz, Michael C.; Narzisi, Giuseppe; Byrska-Bishop, Marta; Clarke, Wayne; Evani, Uday S.; Markello, Charles; Shafin, Kishwar; Zhou, Xin; Sidow, Arend; Bansal, Vikas; Ebert, Peter; Marschall, Tobias; Lansdorp, Peter; Hanlon, Vincent; Mattsson, Carl-Adam; Barrio, Alvaro Martinez; Fiddes, Ian T.; Xiao, Chunlin; Fungtammasan, Arkarachai; Chin, Chen-Shan; Wenger, Aaron M.; Rowell, William J.; Sedlazeck, Fritz J.; Carroll, Andrew; Salit, Marc; Zook, Justin M.

Curated variation benchmarks for challenging medically relevant autosomal genes

具有挑战性的医学相关常染色体基因的策划变异基准

NATURE BIOTECHNOLOGY

IF41.7

2022-02-0776

OAAI

Wagner, Justin; Olson, Nathan D.; Harris, Lindsay; McDaniel, Jennifer; Cheng, Haoyu; Fungtammasan, Arkarachai; Hwang, Yih-Chii; Gupta, Richa; Wenger, Aaron M.; Rowell, William J.; Khan, Ziad M.; Farek, Jesse; Zhu, Yiming; Pisupati, Aishwarya; Mahmoud, Medhat; Xiao, Chunlin; Yoo, Byunggil; Sahraeian, Sayed Mohammad Ebrahim; Miller, Danny E.; Jaspez, David; Lorenzo-Salazar, Jose M.; Munoz-Barrera, Adrian; Rubio-Rodriguez, Luis A.; Flores, Carlos; Narzisi, Giuseppe; Evani, Uday Shanker; Clarke, Wayne E.; Lee, Joyce; Mason, Christopher E.; Lincoln, Stephen E.; Miga, Karen H.; Ebbert, Mark T. W.; Shumate, Alaina; Li, Heng; Chin, Chen-Shan; Zook, Justin M.; Sedlazeck, Fritz J.

The complete sequence of a human genome

人类基因组的完整序列

Science

IF45.8

2022-01-010

OAAI

Sergey Nurk; Sergey Koren; Arang Rhie; Mikko Rautiainen; Andrey V. Bzikadze; Alla Mikheenko; Mitchell Robert Vollger; Nicolas Altemose; Lev I. Uralsky; Ariel Gershman; Sergey S. Aganezov; Savannah J. Hoyt; Mark Diekhans; Glennis A. Logsdon; Michael Alonge; Stylianos E. Antonarakis; Matthew Borchers; Gerard G. Bouffard; Shelise Y. Brooks; Gina Viviana Caldas; Nae-Chyun Chen; Haoyu Cheng; Chen-Shan Chin; William Chow; Leonardo Gomes de Lima; Philip C. Dishuck; Richard Michael Durbin; Tatiana Dvorkina; Ian T. Fiddes; Giulio Formenti; Robert S. Fulton; Arkarachai Fungtammasan; Erik P. Garrison; Patrick G. S. Grady; Tina A. Graves-Lindsay; Ira M. Hall; Nancy Fisher Hansen; Gabrielle A. Hartley; Marina Haukness; Kerstin Howe; Michael W. Hunkapiller; Chirag Jain; Miten Jain; Erich David Jarvis; Peter Kerpedjiev; Melanie Kirsche; Mikhail Kolmogorov; Jonas Korlach; Milinn Kremitzki; Heng Li; Valerie V. Braden Maduro; Tobias Marschall; Ann M. Mc Cartney; Jennifer McDaniel; Danny E. Miller; James C. Mullikin; Eugene Wimberly Myers; Nathan D. Olson; Benedict Paten; Paul S. Peluso; Pavel A. Pevzner; David Porubskỳ; Tamara Potapova; Evgeny Ivanovich Rogaev; Jeffrey Rosenfeld; Steven L. Salzberg; Valérie Schneider; Fritz Joachim Sedlazeck; Kishwar Shafin; Colin J. Shew; Alaina Shumate; Ying Sims; Arian F. A. Smit; Daniela C. Soto; Ivan Sović; Jessica M. Storer; Aaron Streets; Beth A. Sullivan; Françoise Thibaud‐Nissen; James Torrance; Justin Wagner; Brian P. Walenz; Aaron M. Wenger; Jonathan M. D. Wood; Chunlin Xiao; Stephanie M. Yan; Alice Young; Samantha Zarate; Urvashi Surti; Rajiv C. McCoy; Megan Y. Dennis; Ivan A. Alexandrov; Jennifer L. Gerton; Rachel J. Waugh O'Neill; Winston Timp; Justin M. Zook; Michael C. Schatz; Evan E. Eichler; Karen H. Miga; Adam M. Phillippy

The genotype-phenotype landscape of an allosteric protein

MOLECULAR SYSTEMS BIOLOGY

IF7.7

2021-03-3034

Zero-Valent Iron Sand Filtration Can Reduce Human and Plant Pathogenic Bacteria While Increasing Plant Growth Promoting Bacteria in Reclaimed Water

FRONTIERS IN ENVIRONMENTAL SCIENCE

IF3.7

2020-11-029

OAAI

Nathan D. Olson

个人简介

教育背景

工作经历

荣誉奖项

研究方向