Davide Risso - Publications, H-index & Citations

Davide Risso

tate & lyle

35H指数

141论文数

1.5W被引数

收录论文 29

发表时间

Development of a Synbiotic Potential Score (SPS) as a Quantitative Approach for Selecting Putative Synergistic Strain-Prebiotic Candidates 开发一种合生元潜力评分（SPS）作为定量方法，用于筛选潜在的协同菌株-益生元候选物

Journal of Applied Microbiology

IF3.2

2026-05-22

OAAI

Luiza A Wasiewska; Lamiah Kareem; Ainhoa G Linares; Eoin Gunnigle; Davide Risso; Ieva Laurie; Douwe van Sinderen; Gerard Clarke; Harriët Schellekens

omicsGMF: a multi-tool for dimensionality reduction, batch correction and imputation in bulk- and single-cell proteomics omicsGMF: 一种用于bulk-和single-cell proteomics中的降维、批次校正和插补的多工具

Nature Communications

IF15.7

2026-05-20

OAAI

Alexandre Segers; Cristian Castiglione; Christophe Vanderaa; Lennart Martens; Davide Risso; Lieven Clement

Spatially Regularized Gaussian Mixtures for Clustering Spatial Transcriptomic Data 用于空间转录组数据聚类的空间正则化高斯混合模型

JOURNAL OF CLASSIFICATION

IF1.9

2025-12-01

OAAI

Sottosanti, Andrea; Risso, Davide; Denti, Francesco

Differential detection workflows for multi-sample single-cell RNA-seq data 多样本单细胞RNA测序数据的差异检测工作流程

BMC Genomics

IF3.7

2025-10-08

OAAI

Jeroen Gilis; Laura Perin; Milan Malfait; Helena L. Crowell; Koen Van den Berge; Alemu Takele Assefa; Bie Verbist; Davide Risso; Lieven Clement

Exploring public cancer gene expression signatures across bulk, single-cell and spatial transcriptomics data with signifinder Bioconductor package

genomics proteomics bioinformatics

IF2.8

2024-10-03

OAAI

Pirrotta, Stefania; Masatti, Laura; Bortolato, Anna; Corra, Anna; Pedrini, Fabiola; Aere, Martina; Esposito, Giovanni; Martini, Paolo; Risso, Davide; Romualdi, Chiara; Calura, Enrica

Designing spatial transcriptomic experiments

NATURE METHODS

IF32.1

2023-03-02

PREAI

Righelli, Dario; Sottosanti, Andrea; Risso, Davide

Normalization benchmark of ATAC-seq datasets shows the importance of accounting for GC-content effects

CELL REPORTS METHODS

IF4.5

2022-11-01

OAAI

Van den Berge, Koen; Chou, Hsin-Jung; de Bezieux, Hector Roux; Street, Kelly; Risso, Davide; Ngai, John; Dudoit, Sandrine

A spatially resolved brain region- and cell type-specific isoform atlas of the postnatal mouse brain 出生后小鼠大脑的空间分辨的大脑区域和细胞类型特异性同工型图谱

NATURE COMMUNICATIONS

IF15.7

2021-01-19

115

OAAI

Joglekar, Anoushka; Prjibelski, Andrey; Mahfouz, Ahmed; Collier, Paul; Lin, Susan; Schlusche, Anna Katharina; Marrocco, Jordan; Williams, Stephen R.; Haase, Bettina; Hayes, Ashley; Chew, Jennifer G.; Weisenfeld, Neil I.; Wong, Man Ying; Stein, Alexander N.; Hardwick, Simon A.; Hunt, Toby; Wang, Qi; Dieterich, Christoph; Bent, Zachary; Fedrigo, Olivier; Sloan, Steven A.; Risso, Davide; Jarvis, Erich D.; Flicek, Paul; Luo, Wenjie; Pitt, Geoffrey S.; Frankish, Adam; Smit, August B.; Ross, M. Elizabeth; Tilgner, Hagen U.

Editorial: Multi-omic Data Integration in Oncology 社论: 肿瘤学中的多组学数据整合

FRONTIERS IN ONCOLOGY

IF3.3

2020-09-15

OAAI

Finotello, Francesca; Calura, Enrica; Risso, Davide; Hautaniemi, Sampsa; Romualdi, Chiara

Rapid non-uniform adaptation to conformation-specific KRAS G12Cinhibition

CANCER RESEARCH

IF16.6

2020-08-15

PREAI

Xue, Jenny Y.; Zhao, Yulei; Aronowitz, Jordan; Mai, Trang T.; Vides, Alberto; Qeriqi, Besnik; Kim, Dongsung; Li, Chuanchuan; de Stanchina, Elisa; Mazutis, Linas; Risso, Davide; Lito, Piro

Assessment of statistical methods from single cell, bulk RNA-seq, and metagenomics applied to microbiome data 来自单细胞，批量rna-seq和宏基因组学的统计方法评估应用于微生物组数据

GENOME BIOLOGY

IF9.4

2020-08-03

OAAI

Calgaro, Matteo; Romualdi, Chiara; Waldron, Levi; Risso, Davide; Vitulo, Nicola

Non-neuronal expression of SARS-CoV-2 entry genes in the olfactory system suggests mechanisms underlying COVID-19-associated anosmia

SCIENCE ADVANCES

IF12.5

2020-07-31

836

OAAI

Brann, David H.; Tsukahara, Tatsuya; Weinreb, Caleb; Lipovsek, Marcela; Van den Berge, Koen; Gong, Boying; Chance, Rebecca; Macaulay, Iain C.; Chou, Hsin-Jung; Fletcher, Russell B.; Das, Diya; Street, Kelly; de Bezieux, Hector Roux; Choi, Yoon-Gi; Risso, Davide; Dudoit, Sandrine; Purdom, Elizabeth; Mill, Jonathan; Hachem, Ralph Abi; Matsunami, Hiroaki; Logan, Darren W.; Goldstein, Bradley J.; Grubb, Matthew S.; Ngai, John; Datta, Sandeep Robert

Orchestrating single-cell analysis with Bioconductor 使用Bioconductor协调单细胞分析

NATURE METHODS

IF32.1

2019-12-02

438

OAAI

Amezquita, Robert A.; Lun, Aaron T. L.; Becht, Etienne; Carey, Vince J.; Carpp, Lindsay N.; Geistlinger, Ludwig; Marini, Federico; Rue-Albrecht, Kevin; Risso, Davide; Soneson, Charlotte; Waldron, Levi; Pages, Herve; Smith, Mike L.; Huber, Wolfgang; Morgan, Martin; Gottardo, Raphael; Hicks, Stephanie C.

Single-cell transcriptomic profiling of non-small cell lung cancer uncovers inter- and intracell population structure across TCGA lung adenocarcinoma and lung squamous cancer subtypes

CANCER RESEARCH

IF16.6

2019-07-01

PREAI

Gyan, Kofi E.; Deshpande, Aditya; Beg, Shaham; Tian, Huasong; Rosiene, Joel; Stoeckius, Marlon; Smibert, Peter; Risso, Davide; Mosquera, Juan Miguel; Imielinski, Marcin

Shank3 modulates sleep and expression of circadian transcription factors

ELIFE

IF0

2019-04-11

OAAI

Ingiosi, Ashley M.; Schoch, Hannah; Wintler, Taylor; Singletary, Kristan G.; Righelli, Dario; Roser, Leandro G.; Medina, Elizabeth; Risso, Davide; Frank, Marcos G.; Peixoto, Lucia

Performance Assessment and Selection of Normalization Procedures for Single-Cell RNA-Seq

CELL SYSTEMS

IF7.7

2019-04-01

OAAI

Cole, Michael B.; Risso, Davide; Wagner, Allon; DeTomaso, David; Ngai, John; Purdom, Elizabeth; Dudoit, Sandrine; Yosef, Nir

Complementary networks of cortical somatostatin interneurons enforce layer specific control

ELIFE

IF0

2019-03-18

OAAI

Naka, Alexander; Veit, Julia; Shababo, Ben; Chance, Rebecca K.; Risso, Davide; Stafford, David; Snyder, Benjamin; Egladyous, Andrew; Chu, Desiree; Sridharan, Savitha; Mossing, Daniel P.; Paninski, Liam; Ngai, John; Adesnik, Hillel

A general and flexible method for signal extraction from single-cell RNA-seq data (vol 9, 284, 2018)

NATURE COMMUNICATIONS

IF15.7

2019-02-04

OAAI

Risso, Davide; Perraudeau, Fanny; Gribkova, Svetlana; Dudoit, Sandrine; Vert, Jean-Philippe

Slingshot: cell lineage and pseudotime inference for single-cell transcriptomics 弹弓: 单细胞转录组学的细胞谱系和伪时间推断

BMC GENOMICS

IF3.7

2018-06-19

1.3K

OAAI

Street, Kelly; Risso, Davide; Fletcher, Russell B.; Das, Diya; Ngai, John; Yosef, Nir; Purdom, Elizabeth; Dudoit, Sandrine

Observation weights unlock bulk RNA-seq tools for zero inflation and single-cell applications

GENOME BIOLOGY

IF9.4

2018-02-26

OAAI

Van den Berge, Koen; Perraudeau, Fanny; Soneson, Charlotte; Love, Michael I.; Risso, Davide; Vert, Jean-Philippe; Robinson, Mark D.; Dudoit, Sandrine; Clement, Lieven

研究方向