Jonathan Y. Hsu - Publications, H-index & Citations

Jonathan Y. Hsu

J. Craig Venter Institute

28H指数

48论文数

1.4W被引数

收录论文 22

发表时间

Human-specific regulation of neural maturation identified by cross-primate transcriptomics

CURRENT BIOLOGY

IF7.5

2022-11-01

OAAI

Linker, Sara B.; Narvaiza, Inigo; Hsu, Jonathan Y.; Wang, Meiyan; Qiu, Fan; Mendes, Ana P. D.; Oefner, Ruth; Kottilil, Kalyani; Sharma, Amandeep; Randolph-Moore, Lynne; Mejia, Eunice; Santos, Renata; Marchetto, Maria C.; Gage, Fred H.

CRISPR prime editing with ribonucleoprotein complexes in zebrafish and primary human cells (vol 40, pg 189, 2021)

NATURE BIOTECHNOLOGY

IF41.7

2021-05-13

OAAI

Petri, Karl; Zhang, Weiting; Ma, Junyan; Schmidts, Andrea; Lee, Hyunho; Horng, Joy E.; Kim, Daniel Y.; Kurt, Ibrahim C.; Clement, Kendell; Hsu, Jonathan Y.; Pinello, Luca; Maus, Marcela V.; Joung, J. Keith; Yeh, Jing-Ruey Joanna

CRISPR prime editing with ribonucleoprotein complexes in zebrafish and primary human cells

NATURE BIOTECHNOLOGY

IF41.7

2021-04-29

144

OAAI

Transcription factor competition at the γ-globin promoters controls hemoglobin switching (Mar, 10.1038/s41588-021-00798-y, 2021)

NATURE GENETICS

IF31.8

2021-03-17

OAAI

Liu, Nan; Xu, Shuqian; Yao, Qiuming; Zhu, Qian; Kai, Yan; Hsu, Jonathan Y.; Sakon, Phraew; Pinello, Luca; Yuan, Guo-Cheng; Bauer, Daniel E.; Orkin, Stuart H.

Transcription factor competition at the γ-globin promoters controls hemoglobin switching

NATURE GENETICS

IF31.8

2021-03-01

OAAI

Liu, Nan; Xu, Shuqian; Yao, Qiuming; Zhu, Qian; Kai, Yan; Hsu, Jonathan Y.; Sakon, Phraew; Pinello, Luca; Yuan, Guo-Cheng; Bauer, Daniel E.; Orkin, Stuart H.

PrimeDesign software for rapid and simplified design of prime editing guide RNAs PrimeDesign软件，用于快速和简化设计prime编辑指南rna

NATURE COMMUNICATIONS

IF15.7

2021-02-15

115

OAAI

Hsu, Jonathan Y.; Grunewald, Julian; Szalay, Regan; Shih, Justine; Anzalone, Andrew, V; Lam, Kin Chung; Shen, Max W.; Petri, Karl; Liu, David R.; Joung, J. Keith; Pinello, Luca

Scalable characterization of the PAM requirements of CRISPR-Cas enzymes using HT-PAMDA

NATURE PROTOCOLS

IF16

2021-02-05

OAAI

Walton, Russell T.; Hsu, Jonathan Y.; Joung, J. Keith; Kleinstiver, Benjamin P.

Technologies and Computational Analysis Strategies for CRISPR Applications

MOLECULAR CELL

IF16.6

2020-07-01

OAAI

Clement, Kendell; Hsu, Jonathan Y.; Canver, Matthew C.; Joung, J. Keith; Pinello, Luca

Engineered CRISPR-Cas12a variants with increased activities and improved targeting ranges for gene, epigenetic and base editing (vol 37, pg 276, 2019)

NATURE BIOTECHNOLOGY

IF41.7

2020-06-15

OAAI

Kleinstiver, Benjamin P.; Sousa, Alexander A.; Walton, Russell T.; Tak, Y. Esther; Hsu, Jonathan Y.; Clement, Kendell; Welch, Moira M.; Horng, Joy E.; Malagon-Lopez, Jose; Scarfo, Irene; Maus, Marcela V.; Pinello, Luca; Aryee, Martin J.; Joung, J. Keith

A dual-deaminase CRISPR base editor enables concurrent adenine and cytosine editing

NATURE BIOTECHNOLOGY

IF41.7

2020-06-01

211

OAAI

Grunewald, Julian; Zhou, Ronghao; Lareau, Caleb A.; Garcia, Sara P.; Iyer, Sowmya; Miller, Bret R.; Langner, Lukas M.; Hsu, Jonathan Y.; Aryee, Martin J.; Joung, J. Keith

Single-cell trajectories reconstruction, exploration and mapping of omics data with STREAM

NATURE COMMUNICATIONS

IF15.7

2019-04-23

167

OAAI

Chen, Huidong; Albergante, Luca; Hsu, Jonathan Y.; Lareau, Caleb A.; Lo Bosco, Giosue; Guan, Jihong; Zhou, Shuigeng; Gorban, Alexander N.; Bauer, Daniel E.; Aryee, Martin J.; Langenau, David M.; Zinovyev, Andrei; Buenrostro, Jason D.; Yuan, Guo-Cheng; Pinello, Luca

CRISPResso2 provides accurate and rapid genome editing sequence analysis CRISPResso2提供准确和快速的基因组编辑序列分析

NATURE BIOTECHNOLOGY

IF41.7

2019-02-26

875

OAAI

Clement, Kendell; Rees, Holly; Canver, Matthew C.; Gehrke, Jason M.; Farouni, Rick; Hsu, Jonathan Y.; Cole, Mitchel A.; Liu, David R.; Joung, J. Keith; Bauer, Daniel E.; Pinello, Luca

Engineered CRISPR-Cas12a variants with increased activities and improved targeting ranges for gene, epigenetic and base editing 工程改造的CRISPR-Cas12a变体，具有增强的活性和改进的基因，表观遗传和碱基编辑的靶向范围

NATURE BIOTECHNOLOGY

IF41.7

2019-02-11

492

OAAI

Kleinstiver, Benjamin P.; Sousa, Alexander A.; Walton, Russell T.; Tak, Y. Esther; Hsu, Jonathan Y.; Clement, Kendell; Welch, Moira M.; Horng, Joy E.; Malagon-Lopez, Jose; Scarfo, Irene; Maus, Marcela, V; Pinello, Luca; Aryee, Martin J.; Joung, J. Keith

CRISPR-SURF: discovering regulatory elements by deconvolution of CRISPR tiling screen data

NATURE METHODS

IF32.1

2018-11-30

OAAI

Hsu, Jonathan Y.; Fulco, Charles P.; Cole, Mitchel A.; Canver, Matthew C.; Pellin, Danilo; Sher, Falak; Farouni, Rick; Clement, Kendell; Guo, Jimmy A.; Biasco, Luca; Orkin, Stuart H.; Engreitz, Jesse M.; Lander, Eric S.; Joung, J. Keith; Bauer, Daniel E.; Pinello, Luca

Tuning Gene Activity by Inducible and Targeted Regulation of Gene Expression in Minimal Bacterial Cells

ACS SYNTHETIC BIOLOGY

IF3.9

2018-05-22

OAAI

Mariscal, Ana M.; Kakizawa, Shigeyuki; Hsu, Jonathan Y.; Tanaka, Kazuki; Gonzalez-Gonzalez, Luis; Broto, Alicia; Querol, Enrique; Lluch-Senar, Maria; Pinero-Lambea, Carlos; Sun, Lijie; Weyman, Philip D.; Wise, Kim S.; Merryman, Chuck; Tse, Gavin; Moore, Adam J.; Hutchison, Clyde A., III; Smith, Hamilton O.; Tomita, Masaru; Venter, J. Craig; Glass, John, I; Pinol, Jaume; Suzuki, Yo

Response to Unexpected mutations after CRISPR-Cas9 editing in vivo

NATURE METHODS

IF32.1

2018-03-30

OAAI

Lareau, Caleb A.; Clement, Kendell; Hsu, Jonathan Y.; Pattanayak, Vikram; Joung, J. Keith; Aryee, Martin J.; Pinello, Luca

Inducible and multiplex gene regulation using CRISPR-Cpf1-based transcription factors

NATURE METHODS

IF32.1

2017-10-30

175

OAAI

Tak, Y. Esther; Kleinstiver, Benjamin P.; Nunez, James K.; Hsu, Jonathan Y.; Horng, Joy E.; Gong, Jingyi; Weissman, Jonathan S.; Joung, J. Keith

Nuclear RNA-seq of single neurons reveals molecular signatures of activation (vol 7, 11022, 2016)

NATURE COMMUNICATIONS

IF15.7

2017-03-17

OAAI

Lacar, Benjamin; Linker, Sara B.; Jaeger, Baptiste N.; Krishnaswami, Suguna Rani; Barron, Jerika J.; Kelder, Martijn J. E.; Parylak, Sarah L.; Paquola, Apua C. M.; Venepally, Pratap; Novotny, Mark; O'Connor, Carolyn; Fitzpatrick, Conor; Erwin, Jennifer A.; Hsu, Jonathan Y.; Husband, David; McConnell, Michael J.; Lasken, Roger; Gage, Fred H.

Nuclear RNA-seq of single neurons reveals molecular signatures of activation

NATURE COMMUNICATIONS

IF15.7

2016-04-19

346

OAAI

Lacar, Benjamin; Linker, Sara B.; Jaeger, Baptiste N.; Krishnaswami, Suguna; Barron, Jerika; Kelder, Martijn; Parylak, Sarah; Paquola, Apua; Venepally, Pratap; Novotny, Mark; O'Connor, Carolyn; Fitzpatrick, Conor; Erwin, Jennifer; Hsu, Jonathan Y.; Husband, David; McConnell, Michael J.; Lasken, Roger; Gage, Fred H.

Characterization of bipolar disorder patient-specific induced pluripotent stem cells from a family reveals neurodevelopmental and mRNA expression abnormalities

MOLECULAR PSYCHIATRY

IF10.1

2015-03-03

154

OAAI

Madison, J. M.; Zhou, F.; Nigam, A.; Hussain, A.; Barker, D. D.; Nehme, R.; van der Ven, K.; Hsu, J.; Wolf, P.; Fleishman, M.; O'Dushlaine, C.; Rose, S.; Chambert, K.; Lau, F. H.; Ahfeldt, T.; Rueckert, E. H.; Sheridan, S. D.; Fass, D. M.; Nemesh, J.; Mullen, T. E.; Daheron, L.; McCarroll, S.; Sklar, P.; Perlis, R. H.; Haggarty, S. J.

研究方向