Tal Ashuach - Publications, H-index & Citations

Tal Ashuach

University of California System

12H指数

42论文数

2.4K被引数

收录论文 13

发表时间

Comprehensive network modeling approaches unravel dynamic enhancer-promoter interactions across neural differentiation

GENOME BIOLOGY

IF9.4

2024-08-14

OAAI

DeGroat, William; Inoue, Fumitaka; Ashuach, Tal; Yosef, Nir; Ahituv, Nadav; Kreimer, Anat

NF-κB inhibitor alpha controls SARS-CoV-2 infection in ACE2-overexpressing human airway organoids

SCIENTIFIC REPORTS

IF3.9

2024-07-04

OAAI

Simoneau, Camille R.; Chen, Pei-Yi; Xing, Galen K.; Hayashi, Jennifer M.; Chen, Irene P.; Khalid, Mir M.; Meyers, Nathan L.; Taha, Taha Y.; Leon, Kristoffer E.; Suryawanshi, Rahul K.; McCavitt-Malvido, Maria; Ashuach, Tal; Fontaine, Krystal A.; Rodriguez, Lauren; Joehnk, Bastian; Walcott, Keith; Vasudevan, Sreelakshmi; Fang, Xiaohui; Maishan, Mazharul; Schultz, Shawn; Roose, Jeroen P.; Matthay, Michael A.; Sil, Anita; Arjomandi, Mehrdad; Yosef, Nir; Ott, Melanie

Optimizing sequence design strategies for perturbation MPRAs: a computational evaluation framework

NUCLEIC ACIDS RESEARCH

IF13.1

2024-01-31

OAAI

Liu, Jiayi; Ashuach, Tal; Inoue, Fumitaka; Ahituv, Nadav; Yosef, Nir; Kreimer, Anat

Hepatitis C virus infects and perturbs liver stem cells

MBIO

IF4.7

2023-12-19

OAAI

Meyers, Nathan L.; Ashuach, Tal; Lyons, Danielle E.; Khalid, Mir M.; Simoneau, Camille R.; Erickson, Ann L.; Bouhaddou, Mehdi; Nguyen, Thong T.; Kumar, G. Renuka; Taha, Taha Y.; Natarajan, Vaishaali; Baron, Jody L.; Neff, Norma; Zanini, Fabio; Mahmoudi, Tokameh; Quake, Stephen R.; Krogan, Nevan J.; Cooper, Stewart; Mcdevitt, Todd C.; Yosef, Nir; Ott, Melanie

MultiVI: deep generative model for the integration of multimodal data

NATURE METHODS

IF32.1

2023-06-29

OAAI

Ashuach, Tal; Gabitto, Mariano I.; Koodli, Rohan V.; Saldi, Giuseppe-Antonio; Jordan, Michael I.; Yosef, Nir

Massively parallel reporter perturbation assays uncover temporal regulatory architecture during neural differentiation

NATURE COMMUNICATIONS

IF15.7

2022-03-21

OAAI

Kreimer, Anat; Ashuach, Tal; Inoue, Fumitaka; Khodaverdian, Alex; Deng, Chengyu; Yosef, Nir; Ahituv, Nadav

PeakVI: A deep generative model for single-cell chromatin accessibility analysis

CELL REPORTS METHODS

IF4.5

2022-03-01

OAAI

Ashuach, Tal; Reidenbach, Daniel A.; Gayoso, Adam; Yosef, Nir

A Python library for probabilistic analysis of single-cell omics data 用于单细胞组学数据概率分析的Python库

NATURE BIOTECHNOLOGY

IF41.7

2022-02-07

208

OAAI

Gayoso, Adam; Lopez, Romain; Xing, Galen; Boyeau, Pierre; Amiri, Valeh Valiollah Pour; Hong, Justin; Wu, Katherine; Jayasuriya, Michael; Mehlman, Edouard; Langevin, Maxime; Liu, Yining; Samaran, Jules; Misrachi, Gabriel; Nazaret, Achille; Clivio, Oscar; Xu, Chenling; Ashuach, Tal; Gabitto, Mariano; Lotfollahi, Mohammad; Svensson, Valentine; Beltrame, Eduardo da Veiga; Kleshchevnikov, Vitalii; Talavera-Lopez, Carlos; Pachter, Lior; Theis, Fabian J.; Streets, Aaron; Jordan, Michael I.; Regier, Jeffrey; Yosef, Nir

lentiMPRA and MPRAflow for high-throughput functional characterization of gene regulatory elements (vol 15, 2387, 2020)

NATURE PROTOCOLS

IF16

2020-10-30

OAAI

Gordon, M. Grace; Inoue, Fumitaka; Martin, Beth; Schubach, Max; Agarwal, Vikram; Whalen, Sean; Feng, Shiyun; Zhao, Jingjing; Ashuach, Tal; Ziffra, Ryan; Kreimer, Anat; Georgakopoulos-Soares, Ilias; Yosef, Nir; Ye, Chun Jimmie; Pollard, Katherine S.; Shendure, Jay; Kircher, Martin; Ahituv, Nadav

lentiMPRA and MPRAflow for high-throughput functional characterization of gene regulatory elements lentiMPRA和MPRAflow用于基因调控元件的高通量功能表征

NATURE PROTOCOLS

IF16

2020-07-08

OAAI

Gordon, M. Grace; Inoue, Fumitaka; Martin, Beth; Schubach, Max; Agarwal, Vikram; Whalen, Sean; Feng, Shiyun; Zhao, Jingjing; Ashuach, Tal; Ziffra, Ryan; Kreimer, Anat; Georgakopoulous-Soares, Ilias; Yosef, Nir; Ye, Chun Jimmie; Pollard, Katherine S.; Shendure, Jay; Kircher, Martin; Ahituv, Nadav

Functional interpretation of single cell similarity maps

NATURE COMMUNICATIONS

IF15.7

2019-09-26

154

OAAI

De Tomaso, David; Jones, Matthew G.; Subramaniam, Meena; Ashuach, Tal; Ye, Chun J.; Yosef, Nir

GeneFishing to reconstruct context specific portraits of biological processes

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

IF9.1

2019-09-04

OAAI