Matthew E. Ritchie - Publications, H-index & Citations

Matthew E. Ritchie

Walter and Eliza Hall Institute of Medical Research

56H指数

271论文数

5.7W被引数

收录论文 82

发表时间

Author Correction: Peyer’s patch M cells organize an epithelial niche that sustains group 3 innate lymphoid cells and IL-22 作者更正：派尔集合淋巴结M细胞组织一个上皮小生境，维持群体3先天淋巴细胞的存活和IL-22

Nature Immunology

IF27.6

2026-09-01

OAAI

Wang H. J. Cao; Yue You; Nancy Wang; M. Zeeshan Chaudhry; Huiyang Yu; Peter T. Bell; Ellesandra C. Noye; Renae Denman; Byungchul Lee; Abbey Waddington; Junpeng Ye; Jaring Schreuder; Qiutong Huang; Julie Tellier; Sophie Curio; James Santiago; Daniela Amann-Zalcenstein; Nicolas Jacquelot; Peter Hickey; Stephen L. Nutt; Cyril Seillet; Philip M. Hansbro; Verena C. Wimmer; Richard A. Strugnell; Zewen Kelvin Tuong; Matthew E. Ritchie; Gabrielle T. Belz

Peyer’s patch M cells organize an epithelial niche that sustains group 3 innate lymphoid cells and IL-22 派尔集合淋巴结M细胞组织一个上皮微环境，以维持第3组先天淋巴细胞和IL-22

Nature Immunology

IF27.6

2026-08-14

OAAI

The E3-ome gene-centric compendium reveals the human E3 ligase landscape 以E3-ome基因为中心的纲要揭示了人类E3连接酶的景观

Cell

IF42.5

2026-03-20

OAAI

Ngee Kiat Chua; Tania J. González-Robles; Cameron J. Reddington; Jane Dudley-Fraser; Richard W. Birkinshaw; Jiru Han; Ashleigh Solano; Soon Wei Wong; Tomasz Kochańczyk; Joshua J. Peter; Mark A. Nakasone; Florian Aust; Jacob Munro; Yeh Huei Tong; Julie Iskander; Waruni Abeysekera; Alex Garnham; Hannah Huckstep; Matthew E. Ritchie; Ingrid Wertz

Alpseq: an open-source workflow to turbocharge nanobody discovery with high-throughput sequencing

mAbs

IF7.3

2026-02-03

OAAI

Kathleen Zeglinski; Jakob Schuster; Jaison D Sa; Amy Adair; Jing Deng; Phillip Pymm; Matthew E. Ritchie; Rory Bowden; Wai-Hong Tham; Quentin Gouil

stPipe: a flexible and streamlined R/Bioconductor pipeline for preprocessing sequencing-based spatial transcriptomics data stPipe: 一种灵活且高效的R/Bioconductor流程，用于预处理基于测序的空间转录组学数据

NAR GENOMICS AND BIOINFORMATICS

IF2.8

2025-12-01

OAAI

Xu, Yang; Sargeant, Callum J.; You, Yue; You, Yupei; Su, Shian; Wang, Changqing; Tian, Luyi; Chen, Yunshun; Ritchie, Matthew E.

Jchain-diphtheria toxin receptor mice allow for depletion of antibody-secreting cells and analysis of differentiation kinetics Jchain-白喉毒素受体小鼠可用于清除抗体分泌细胞并分析分化动力学

iScience

IF4.1

2025-11-05

OAAI

KimAnh T. Pioli; Matthew Ritchie; Hira Haq; Peter D. Pioli

TIRE-seq simplifies transcriptomics via integrated RNA capture and library preparation TIRE-seq通过整合RNA捕获和文库制备简化了转录组学。

SCIENTIFIC REPORTS

IF3.9

2025-05-02

OAAI

O'Keeffe, Piper; Nouri, Yasmin; Saw, Hui Shi; Moore, Zachery; Baldwin, Tracey M.; Olechnowicz, Sam W. Z.; Jabbari, Jafar S.; Squire, David McG; Leslie, Stephen; Wang, Changqing; You, Yupei; Ritchie, Matthew E.; Cross, Ryan S.; Jenkins, Misty R.; Audiger, Cindy; Naik, Shalin H.; Whittle, James R.; Freytag, Saskia; Best, Sarah A.; Hickey, Peter F.; Amann-Zalcenstein, Daniela; Bowden, Rory; Brown, Daniel V.

Benchmarking spatial transcriptomics technologies with the multi-sample SpatialBenchVisium dataset 使用多样本SpatialBenchVisium数据集评估空间转录组学技术

GENOME BIOLOGY

IF9.4

2025-03-28

OAAI

Du, Mei R. M.; Wang, Changqing; Law, Charity W.; Amann-Zalcenstein, Daniela; Anttila, Casey J. A.; Ling, Ling; Hickey, Peter F.; Sargeant, Callum J.; Chen, Yunshun; Ioannidis, Lisa J.; Rajasekhar, Pradeep; Yip, Raymond K. H.; Rogers, Kelly L.; Hansen, Diana S.; Bowden, Rory; Ritchie, Matthew E.

An optimized protocol for quality control of gene therapy vectors using nanopore direct RNA sequencing 使用纳米孔直接RNA测序对基因治疗载体进行质量控制的优化方案

GENOME RESEARCH

IF5.5

2024-10-28

PREAI

Zeglinski, Kathleen; Montellese, Christian; Ritchie, Matthew E.; Alhamdoosh, Monther; Vonarburg, Cedric; Bowden, Rory; Jordi, Monika; Gouil, Quentin; Aeschimann, Florian; Hsu, Arthur

Measuring X-Chromosome inactivation skew for X-linked diseases with adaptive nanopore sequencing

GENOME RESEARCH

IF5.5

2024-09-16

PREAI

Gocuk, Sena A.; Lancaster, James; Su, Shian; Jolly, Jasleen K.; Edwards, Thomas L.; Hickey, Doron G.; Ritchie, Matthew E.; Blewitt, Marnie E.; Ayton, Lauren N.; Gouil, Quentin

Establishment of single-cell transcriptional states during seed germination

NATURE PLANTS

IF13.6

2024-09-10

OAAI

Liew, Lim Chee; You, Yue; Auroux, Lucas; Oliva, Marina; Peirats-Llobet, Marta; Ng, Sophia; Tamiru-Oli, Muluneh; Berkowitz, Oliver; Hong, Uyen Vu Thuy; Haslem, Asha; Stuart, Tim; Ritchie, Matthew E.; Bassel, George W.; Lister, Ryan; Whelan, James; Gouil, Quentin; Lewsey, Mathew G.

Systematic comparison of sequencing-based spatial transcriptomic methods 基于测序的空间转录组方法的系统比较

NATURE METHODS

IF32.1

2024-07-04

OAAI

You, Yue; Fu, Yuting; Li, Lanxiang; Zhang, Zhongmin; Jia, Shikai; Lu, Shihong; Ren, Wenle; Liu, Yifang; Xu, Yang; Liu, Xiaojing; Jiang, Fuqing; Peng, Guangdun; Sampath Kumar, Abhishek; Ritchie, Matthew E.; Liu, Xiaodong; Tian, Luyi

Systematic assessment of long-read RNA-seq methods for transcript identification and quantification 用于转录本鉴定和定量的长读rna-seq方法的系统评估

NATURE METHODS

IF32.1

2024-06-07

OAAI

Pardo-Palacios, Francisco J.; Wang, Dingjie; Reese, Fairlie; Diekhans, Mark; Carbonell-Sala, Silvia; Williams, Brian; Loveland, Jane E.; De Maria, Maite; Adams, Matthew S.; Balderrama-Gutierrez, Gabriela; Behera, Amit K.; Gonzalez Martinez, Jose M.; Hunt, Toby; Lagarde, Julien; Liang, Cindy E.; Li, Haoran; Meade, Marcus Jerryd; Moraga Amador, David A.; Prjibelski, Andrey D.; Birol, Inanc; Bostan, Hamed; Brooks, Ashley M.; Celik, Muhammed Hasan; Chen, Ying; Du, Mei R. M.; Felton, Colette; Goeke, Jonathan; Hafezqorani, Saber; Herwig, Ralf; Kawaji, Hideya; Lee, Joseph; Li, Jian-Liang; Lienhard, Matthias; Mikheenko, Alla; Mulligan, Dennis; Nip, Ka Ming; Pertea, Mihaela; Ritchie, Matthew E.; Sim, Andre D.; Tang, Alison D.; Wan, Yuk Kei; Wang, Changqing; Wong, Brandon Y.; Yang, Chen; Barnes, If; Berry, Andrew E.; Capella-Gutierrez, Salvador; Cousineau, Alyssa; Dhillon, Namrita; Fernandez-Gonzalez, Jose M.; Ferrandez-Peral, Luis; Garcia-Reyero, Natalia; Goetz, Stefan; Hernandez-Ferrer, Carles; Kondratova, Liudmyla; Liu, Tianyuan; Martinez-Martin, Alessandra; Menor, Carlos; Mestre-Tomas, Jorge; Mudge, Jonathan M.; Panayotova, Nedka G.; Paniagua, Alejandro; Repchevsky, Dmitry; Ren, Xingjie; Rouchka, Eric; Saint-John, Brandon; Sapena, Enrique; Sheynkman, Leon; Smith, Melissa Laird; Suner, Marie-Marthe; Takahashi, Hazuki; Youngworth, Ingrid A.; Carninci, Piero; Denslow, Nancy D.; Guigo, Roderic; Hunter, Margaret E.; Maehr, Rene; Shen, Yin; Tilgner, Hagen U.; Wold, Barbara J.; Vollmers, Christopher; Frankish, Adam; Au, Kin Fai; Sheynkman, Gloria M.; Mortazavi, Ali; Conesa, Ana; Brooks, Angela N.

An immunohistochemical atlas of necroptotic pathway expression

EMBO MOLECULAR MEDICINE

IF8.3

2024-05-15

OAAI

Chiou, Shene; Al-Ani, Aysha H.; Pan, Yi; Patel, Komal M.; Kong, Isabella Y.; Whitehead, Lachlan W.; Light, Amanda; Young, Samuel N.; Barrios, Marilou; Sargeant, Callum; Rajasekhar, Pradeep; Zhu, Leah; Hempel, Anne; Lin, Ann; Rickard, James A.; Hall, Cathrine; Gangatirkar, Pradnya; Yip, Raymond K. H.; Cawthorne, Wayne; Jacobsen, Annette, V; Horne, Christopher R.; Martin, Katherine R.; Ioannidis, Lisa J.; Hansen, Diana S.; Day, Jessica; Wicks, Ian P.; Law, Charity; Ritchie, Matthew E.; Bowden, Rory; Hildebrand, Joanne M.; O'Reilly, Lorraine A.; Silke, John; Giulino-Roth, Lisa; Tsui, Ellen; Rogers, Kelly L.; Hawkins, Edwin D.; Christensen, Britt; Murphy, James M.; Samson, Andre L.

Restrander: rapid orientation and artefact removal for long-read cDNA data

genomics proteomics bioinformatics

IF2.8

2023-12-23

OAAI

Schuster, Jakob; Ritchie, Matthew E.; Gouil, Quentin

Dividing out quantification uncertainty allows efficient assessment of differential transcript expression with edgeR

NUCLEIC ACIDS RESEARCH

IF13.1

2023-12-07

OAAI

Baldoni, Pedro L.; Chen, Yunshun; Hediyeh-zadeh, Soroor; Liao, Yang; Dong, Xueyi; Ritchie, Matthew E.; Shi, Wei; Smyth, Gordon K.

scPipe: an extended preprocessing pipeline for comprehensive single-cell ATAC-Seq data integration in R/Bioconductor

genomics proteomics bioinformatics

IF2.8

2023-11-30

OAAI

Amarasinghe, Shanika L.; Yang, Phil; Voogd, Oliver; Yang, Haoyu; Du, Mei R. M.; Su, Shian; Brown, Daniel, V; Jabbari, Jafar S.; Bowden, Rory; Ritchie, Matthew E.

Benchmarking long-read RNA-sequencing analysis tools using in silico mixtures

NATURE METHODS

IF32.1

2023-10-02

OAAI

Dong, Xueyi; Du, Mei R. M.; Gouil, Quentin; Tian, Luyi; Jabbari, Jafar S.; Bowden, Rory; Baldoni, Pedro L.; Chen, Yunshun; Smyth, Gordon K.; Amarasinghe, Shanika L.; Law, Charity W.; Ritchie, Matthew E.

SMCHD1 has separable roles in chromatin architecture and gene silencing that could be targeted in disease

NATURE COMMUNICATIONS

IF15.7

2023-09-25

OAAI

Tapia del Fierro, Andres; den Hamer, Bianca; Benetti, Natalia; Jansz, Natasha; Chen, Kelan; Beck, Tamara; Vanyai, Hannah; Gurzau, Alexandra D.; Daxinger, Lucia; Xue, Shifeng; Ly, Thanh Thao Nguyen; Wanigasuriya, Iromi; Iminitoff, Megan; Breslin, Kelsey; Oey, Harald; Krom, Yvonne D.; van der Hoorn, Dinja; Bouwman, Linde F.; Johanson, Timothy M.; Ritchie, Matthew E.; Gouil, Quentin A.; Reversade, Bruno; Prin, Fabrice; Mohun, Timothy; van der Maarel, Silvere M.; Mcglinn, Edwina; Murphy, James M.; Keniry, Andrew; de Greef, Jessica C.; Blewitt, Marnie E.

Venetoclax treatment in patients with cancer has limited impact on circulating T and NK cells 维尼托克治疗癌症患者对循环T和NK细胞的影响有限

BLOOD ADVANCES

IF7.1

2023-06-15

OAAI

Teh, Charis E.; Peng, Hongke; Luo, Meng-Xiao; Tan, Tania; Trussart, Marie; Howson, Lauren J.; Chua, Chong Chyn; Muttiah, Christine; Brown, Fiona; Ritchie, Matthew E.; Wei, Andrew H.; Roberts, Andrew W.; Bryant, Vanessa L.; Anderson, Mary Ann; Lindeman, Geoffrey J.; Huang, David C. S.; Thijssen, Rachel; Gray, Daniel H. D.

研究方向