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N

Niina Haiminen

tj watson research center
H指数:21
被引数:2,061

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SARS-CoV-2 infectivity can be modulated through bacterial grooming of the glycocalyx

SARS-CoV-2感染性可以通过糖萼的细菌修饰来调节

MBIO
IF4.7
2025-02-250
OAAI
Martino, Cameron; Kellman, Benjamin P.; Sandoval, Daniel R.; Clausen, Thomas Mandel; Cooper, Robert; Benjdia, Alhosna; Soualmia, Feryel; Clark, Alex E.; Garretson, Aaron F.; Marotz, Clarisse A.; Song, Se Jin; Wandro, Stephen; Zaramela, Livia S.; Salido, Rodolfo A.; Zhu, Qiyun; Armingol, Erick; Vazquez-Baeza, Yoshiki; Mcdonald, Daniel; Sorrentino, James T.; Taylor, Bryn; Belda-Ferre, Pedro; Das, Promi; Ali, Farhana; Liang, Chenguang; Zhang, Yujie; Schifanella, Luca; Covizzi, Alice; Lai, Alessia; Riva, Agostino; Basting, Christopher; Broedlow, Courtney Ann; Havulinna, Aki S.; Jousilahti, Pekka; Estaki, Mehrbod; Kosciolek, Tomasz; Kuplicki, Rayus; Victor, Teresa A.; Paulus, Martin P.; Savage, Kristen E.; Benbow, Jennifer L.; Spielfogel, Emma S.; Anderson, Cheryl A. M.; Martinez, Maria Elena; Lacey, James V.; Huang, Shi; Haiminen, Niina; Parida, Laxmi; Kim, Ho-Cheol; Gilbert, Jack A.; Sweeney, Daniel A.; Allard, Sarah M.; Swafford, Austin D.; Cheng, Susan; Inouye, Michael; Niiranen, Teemu; Jain, Mohit; Salomaa, Veikko; Zengler, Karsten; Klatt, Nichole R.; Hasty, Jeff; Berteau, Olivier; Carlin, Aaron F.; Esko, Jeffrey D.; Lewis, Nathan E.; Knight, Rob
Phylogeny-Aware Analysis of Metagenome Community Ecology Based on Matched Reference Genomes while Bypassing Taxonomy (vol 7, pg e00167, 2023)

基于匹配的参考基因组，同时绕过分类学，对宏基因组群落生态学进行系统发育感知分析 (第7卷，pg e00167，2023)

MSYSTEMS
IF4.6
2024-11-190
PRE
Zhu, Qiyun; Huang, Shi; Gonzalez, Antonio; Mcgrath, Imran; Mcdonald, Daniel; Haiminen, Niina; Armstrong, George; Vazquez-Baeza, Yoshiki; Yu, Julian; Kuczynski, Justin; Sepich-Poore, Gregory D.; Swafford, Austin D.; Das, Promi; Shaffer, Justin P.; Lejzerowicz, Franck; Belda-Ferre, Pedro; Havulinna, Aki S.; Meric, Guillaume; Niiranen, Teemu; Lahti, Leo; Salomaa, Veikko; Kim, Ho-Cheol; Jain, Mohit; Inouye, Michael; Gilbert, Jack A.; Knight, Rob
Standardized multi-omics of Earth’s microbiomes reveals microbial and metabolite diversity
Nature Microbiology
IF19.4
2022-11-280
OAAI
Justin P. Shaffer; Louis-Félix Nothias; Luke R. Thompson; Jon G. Sanders; Rodolfo A. Salido; Sneha P. Couvillion; Asker D. Brejnrod; Franck Lejzerowicz; Niina Haiminen; Shi Huang; Holly L. Lutz; Qiyun Zhu; Cameron Martino; James T. Morton; Smruthi Karthikeyan; Mélissa Nothias-Esposito; Kai Dührkop; Sebastian Böcker; Hyun Woo Kim; Alexander A. Aksenov; Wout Bittremieux; Jeremiah J. Minich; Clarisse Marotz; MacKenzie M. Bryant; Karenina Sanders; Tara Schwartz; Greg Humphrey; Yoshiki Vásquez-Baeza; Anupriya Tripathi; Laxmi Parida; Anna Paola Carrieri; Kristen L. Beck; Promi Das; Antonio González; Daniel McDonald; Joshua Ladau; Søren M. Karst; Mads Albertsen; Gail Ackermann; Jeff DeReus; Torsten Thomas; Daniel Petras; Ashley Shade; James Stegen; Se Jin Song; Thomas O. Metz; Austin D. Swafford; Pieter C. Dorrestein; Janet K. Jansson; Jack A. Gilbert; Rob Knight
Phylogeny-Aware Analysis of Metagenome Community Ecology Based on Matched Reference Genomes while Bypassing Taxonomy
MSYSTEMS
IF4.6
2022-04-2648
OAAI
Zhu, Qiyun; Huang, Shi; Gonzalez, Antonio; McGrath, Imran; McDonald, Daniel; Haiminen, Niina; Armstrong, George; Vazquez-Baeza, Yoshiki; Yu, Julian; Kuczynski, Justin; Sepich-Poore, Gregory D.; Swafford, Austin D.; Das, Promi; Shaffer, Justin P.; Lejzerowicz, Franck; Belda-Ferre, Pedro; Havulinna, Aki S.; Meric, Guillaume; Niiranen, Teemu; Lahti, Leo; Salomaa, Veikko; Kim, Ho-Cheol; Jain, Mohit; Inouye, Michael; Gilbert, Jack A.; Knight, Rob
Efficient computation of Faith's phylogenetic diversity with applications in characterizing microbiomes
GENOME RESEARCH
IF5.5
2021-09-0327
OA
Armstrong, George; Cantrell, Kalen; Huang, Shi; McDonald, Daniel; Haiminen, Niina; Carrieri, Anna Paola; Zhu, Qiyun; Gonzalez, Antonio; McGrath, Imran; Beck, Kristen L.; Hakim, Daniel; Havulinna, Aki S.; Meric, Guillaume; Niiranen, Teemu; Lahti, Leo; Salomaa, Veikko; Jain, Mohit; Inouye, Michael; Swafford, Austin D.; Kim, Ho-Cheol; Parida, Laxmi; Vazquez-Baeza, Yoshiki; Knight, Rob
SARS-CoV-2 detection status associates with bacterial community composition in patients and the hospital environment
MICROBIOME
IF12.7
2021-06-0837
OAAI
Marotz, Clarisse; Belda-Ferre, Pedro; Ali, Farhana; Das, Promi; Huang, Shi; Cantrell, Kalen; Jiang, Lingjing; Martino, Cameron; Diner, Rachel E.; Rahman, Gibraan; McDonald, Daniel; Armstrong, George; Kodera, Sho; Donato, Sonya; Ecklu-Mensah, Gertrude; Gottel, Neil; Salas Garcia, Mariana C.; Chiang, Leslie Y.; Salido, Rodolfo A.; Shaffer, Justin P.; Bryant, Mac Kenzie; Sanders, Karenina; Humphrey, Greg; Ackermann, Gail; Haiminen, Niina; Beck, Kristen L.; Kim, Ho-Cheol; Carrieri, Anna Paola; Parida, Laxmi; Vazquez-Baeza, Yoshiki; Torriani, Francesca J.; Knight, Rob; Gilbert, Jack; Sweeney, Daniel A.; Allard, Sarah M.
Challenges in benchmarking metagenomic profilers

对宏基因组分析器进行基准测试的挑战

NATURE METHODS
IF32.1
2021-05-1363
OAAI
Sun, Zheng; Huang, Shi; Zhang, Meng; Zhu, Qiyun; Haiminen, Niina; Carrieri, Anna Paola; Vazquez-Baeza, Yoshiki; Parida, Laxmi; Kim, Ho-Cheol; Knight, Rob; Liu, Yang-Yu
EMPress Enables Tree-Guided, Interactive, and Exploratory Analyses of Multi-omic Data Sets

EMPress可以对多组学数据集进行树引导，交互式和探索性分析

MSYSTEMS
IF4.6
2021-04-2725
OAAI
Cantrell, Kalen; Fedarko, Marcus W.; Rahman, Gibraan; McDonald, Daniel; Yang, Yimeng; Zaw, Thant; Gonzalez, Antonio; Janssen, Stefan; Estaki, Mehrbod; Haiminen, Niina; Beck, Kristen L.; Zhu, Qiyun; Sayyari, Erfan; Morton, James T.; Armstrong, George; Tripathi, Anupriya; Gauglitz, Julia M.; Marotz, Clarisse; Matteson, Nathaniel L.; Martino, Cameron; Sanders, Jon G.; Carrieri, Anna Paola; Song, Se Jin; Swafford, Austin D.; Dorrestein, Pieter C.; Andersen, Kristian G.; Parida, Laxmi; Kim, Ho-Cheol; Vazquez-Baeza, Yoshiki; Knight, Rob
Explainable AI reveals changes in skin microbiome composition linked to phenotypic differences
SCIENTIFIC REPORTS
IF3.9
2021-02-2559
OAAI
Carrieri, Anna Paola; Haiminen, Niina; Maudsley-Barton, Sean; Gardiner, Laura-Jayne; Murphy, Barry; Mayes, Andrew E.; Paterson, Sarah; Grimshaw, Sally; Winn, Martyn; Shand, Cameron; Hadjidoukas, Panagiotis; Rowe, Will P. M.; Hawkins, Stacy; MacGuire-Flanagan, Ashley; Tazzioli, Jane; Kenny, John G.; Parida, Laxmi; Hoptroff, Michael; Pyzer-Knapp, Edward O.
Monitoring the microbiome for food safety and quality using deep shotgun sequencing
NPJ SCIENCE OF FOOD
IF7.8
2021-02-0822
OAAI
Beck, Kristen L.; Haiminen, Niina; Chambliss, David; Edlund, Stefan; Kunitomi, Mark; Huang, B. Carol; Kong, Nguyet; Ganesan, Balasubramanian; Baker, Robert; Markwell, Peter; Kawas, Ban; Davis, Matthew; Prill, Robert J.; Krishnareddy, Harsha; Seabolt, Ed; Marlowe, Carl H.; Pierre, Sophie; Quintanar, Andre; Parida, Laxmi; Dubois, Geraud; Kaufman, James; Weimer, Bart C.
Human Skin, Oral, and Gut Microbiomes Predict Chronological Age

人类皮肤，口腔和肠道微生物组预测年龄

MSYSTEMS
IF4.6
2020-02-1196
OAAI
Huang, Shi; Haiminen, Niina; Carrieri, Anna-Paola; Hu, Rebecca; Jiang, Lingjing; Parida, Laxmi; Russell, Baylee; Allaband, Celeste; Zarrinpar, Amir; Vazquez-Baeza, Yoshiki; Belda-Ferre, Pedro; Zhou, Hongwei; Kim, Ho-Cheol; Swafford, Austin D.; Knight, Rob; Xu, Zhenjiang Zech
Food authentication from shotgun sequencing reads with an application on high protein powders

Shot弹枪测序读取的食品认证及其在高蛋白粉末上的应用

NPJ SCIENCE OF FOOD
IF7.8
2019-11-1927
OAAI
Haiminen, Niina; Edlund, Stefan; Chambliss, David; Kunitomi, Mark; Weimer, Bart C.; Ganesan, Balasubramanian; Baker, Robert; Markwell, Peter; Davis, Matthew; Huang, B. Carol; Kong, Nguyet; Prill, Robert J.; Marlowe, Carl H.; Quintanar, Andre; Pierre, Sophie; Dubois, Geraud; Kaufman, James H.; Parida, Laxmi; Beck, Kristen L.

研究方向

暂未获取到该数据
L
Laxmi Parida
H 指数:44论文数:477被引数:7,685
R
Rob Knight
H 指数:255论文数:1,814被引数:46.8万
H
Ho‐Cheol Kim
H 指数:45论文数:206被引数:1.0万
A
Anna Paola Carrieri
H 指数:16论文数:46被引数:1,103
K
Kristen L. Beck
H 指数:15论文数:56被引数:1,045
Y
Yoshiki Vázquez‐Baeza
H 指数:54论文数:136被引数:6.2万
A
Austin D. Swafford
H 指数:39论文数:106被引数:3.5万
Q
Qiyun Zhu
H 指数:52论文数:197被引数:4.2万
F
Filippo Utro
H 指数:20论文数:129被引数:3,222
S
Shi Huang
H 指数:44论文数:178被引数:7,286