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I

Itoshi Nikaido

riken center for biosystems dynamics research

H指数:30

被引数:4,882

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Genomic characterization of sub-populations in human pluripotent stem cell-derived retinal progenitor cells driving retinal lamination

人源多能干细胞来源的视网膜祖细胞中子群体基因组特征及其对视网膜层板形成的驱动作用

Stem Cell Reports

IF5.1

2026-03-050

OAAI

scRepli-RamDA-seq: a multi-omics technology enabling the analysis of gene expression dynamics during S-phase

scRepli-RamDA-seq：一种多组学技术，可实现对S期基因表达动态的分析

Nature Communications

IF15.7

2025-12-150

OAAI

Single-cell transcriptomics uncovers EGFR signaling-mediated gastric progenitor cell differentiation in stomach homeostasis (vol 14, 3750, 2023)

NATURE COMMUNICATIONS

IF15.7

2023-10-170

OAAI

Distinctiveness and continuity in transcriptome and connectivity in the anterior-posterior axis of the paraventricular nucleus of the thalamus

IF6.9

2023-10-017

OA

WUSCHEL-RELATED HOMEOBOX 13 suppresses de novo shoot regeneration via cell fate control of pluripotent callus

SCIENCE ADVANCES

IF12.5

2023-07-0721

OAAI

Single-cell transcriptomics uncovers EGFR signaling-mediated gastric progenitor cell differentiation in stomach homeostasis

NATURE COMMUNICATIONS

IF15.7

2023-06-2912

OAAI

Enhanced transcriptional heterogeneity mediated by NF-κB super-enhancers

IF3.7

2022-06-019

OAAI

Best practices for reporting throughput in biomedical research

IF32.1

2022-05-0412

PRE

A common epigenetic mechanism across different cellular origins underlies systemic immune dysregulation in an idiopathic autism mouse model

MOLECULAR PSYCHIATRY

IF10.1

2022-05-028

PRE

Single-oocyte transcriptome analysis reveals aging-associated effects influenced by life stage and calorie restriction

IF7.1

2021-07-1027

OAAI

Local states of chromatin compaction at transcription start sites control transcription levels

NUCLEIC ACIDS RESEARCH

IF13.1

2021-07-0716

OAAI

Tracing the origin of hair follicle stem cells

IF48.5

2021-06-090

PREAI

Developmental excitation-inhibition imbalance underlying psychoses revealed by single-cell analyses of discordant twins-derived cerebral organoids

MOLECULAR PSYCHIATRY

IF10.1

2020-08-0769

OAAI

Genome-wide kinetic properties of transcriptional bursting in mouse embryonic stem cells

SCIENCE ADVANCES

IF12.5

2020-06-1760

OAAI

The Number of Transcription Factors at an Enhancer Determines Switch-like Gene Expression

IF6.9

2020-06-0121

OAAI

Benchmarking single-cell RNA-sequencing protocols for cell atlas projects

NATURE BIOTECHNOLOGY

IF41.7

2020-04-06293

OAAI

Mereu, Elisabetta; Lafzi, Atefeh; Moutinho, Catia; Ziegenhain, Christoph; McCarthy, Davis J.; Alvarez-Varela, Adrian; Batlle, Eduard; Sagar; Gruen, Dominic; Lau, Julia K.; Boutet, Stephane C.; Sanada, Chad; Ooi, Aik; Jones, Robert C.; Kaihara, Kelly; Brampton, Chris; Talaga, Yasha; Sasagawa, Yohei; Tanaka, Kaori; Hayashi, Tetsutaro; Braeuning, Caroline; Fischer, Cornelius; Sauers, Sascha; Trefzer, Timo; Conrad, Christian; Adiconis, Xian; Nguyen, Lan T.; Regev, Aviv; Levin, Joshua Z.; Parekh, Swati; Janjic, Aleksandar; Wange, Lucas E.; Bagnoli, Johannes W.; Enard, Wolfgang; Gut, Marta; Sandberg, Rickard; Nikaido, Itoshi; Gut, Ivo; Stegle, Oliver; Heyn, Holger

Millefy: visualizing cell-to-cell heterogeneity in read coverage of single-cell RNA sequencing datasets

Millefy: 在单细胞RNA测序数据集的读段覆盖中可视化细胞间异质性

IF3.7

2020-03-035

OAAI

Benchmarking principal component analysis for large-scale single-cell RNA-sequencing

IF9.4

2020-01-2060

OAAI

An NMF-based approach to discover overlooked differentially expressed gene regions from single-cell RNA-seq data

genomics proteomics bioinformatics

IF2.8

2019-12-163

OAAI

CellFishing.jl: an ultrafast and scalable cell search method for single-cell RNA sequencing

IF9.4

2019-02-1117

OAAI