Derek M. Bickhart - Publications, H-index & Citations

Derek M. Bickhart

pirbright institute

49H指数

207论文数

1.1W被引数

收录论文 74

发表时间

Correlating the oral swab microbial community with milk production metrics in Holstein dairy cows 将口咽拭子微生物群落与荷斯坦奶牛的产奶量指标相关联

MSPHERE

IF3.1

2025-05-14

OAAI

Skarlupka, Joseph H.; Cox, Madison S.; Steinberger, Andrew J.; Sbardellati, Dino L.; Scheftgen, Andrew J.; Zuniga-Chaves, Ibrahim; Paget, Eric; Skadron, Charles; Attipetty, Nithya; Mcclure, Jennifer C.; Bickhart, Derek M.; Suen, Garret

Oral swabs as a proxy for direct ruminal microbiome sampling in Holstein dairy cows is correlated with sample color (vol 15, 1466375, 2024)

FRONTIERS IN MICROBIOLOGY

IF4.5

2024-11-13

OAAI

Skarlupka, Joseph H.; Cox, Madison S.; Steinberger, Andrew J.; Sbardellati, Dino L.; Mcclure, Jennifer C.; Bickhart, Derek M.; Scheftgen, Andrew J.; Zuniga-Chaves, Ibrahim; Wolfe, Luke A.; Paget, Eric; Skadron, Charles; Attipetty, Nithya; Suen, Garret

Oral swabs as a proxy for direct ruminal microbiome sampling in Holstein dairy cows is correlated with sample color

FRONTIERS IN MICROBIOLOGY

IF4.5

2024-09-17

OAAI

Skarlupka, Joseph H.; Cox, Madison S.; Steinberger, Andrew J.; Sbardellati, Dino L.; McClure, Jennifer C.; Bickhart, Derek M.; Scheftgen, Andrew J.; Zuniga-Chaves, Ibrahim; Wolfe, Luke A.; Paget, Eric; Skadron, Charles; Attipetty, Nithya; Suen, Garret

The Bovine Pangenome Consortium: democratizing production and accessibility of genome assemblies for global cattle breeds and other bovine species 牛Pangenome联盟: 使全球牛品种和其他牛物种的基因组组装的生产和可及性民主化

GENOME BIOLOGY

IF9.4

2023-06-19

OAAI

Smith, Timothy P. L.; Bickhart, Derek M.; Boichard, Didier; Chamberlain, Amanda J.; Djikeng, Appolinaire; Jiang, Yu; Low, Wai Y.; Pausch, Hubert; Demyda-Peyras, Sebastian; Prendergast, James; Schnabel, Robert D.; Rosen, Benjamin D.

Truncation of IFT80 causes early embryonic loss in Holstein cattle associated with Holstein haplotype 2

JOURNAL OF DAIRY SCIENCE

IF4.4

2022-11-01

OAAI

Ortega, M. Sofia; Bickhart, Derek M.; Lockhart, Kelsey N.; Null, Daniel J.; Hutchison, Jana L.; McClure, Jennifer C.; Cole, John B.

Expression and Variation of the Genes Involved in Rhizobium Nodulation in Red Clover 红三叶根瘤菌结瘤相关基因的表达和变异

PLANTS-BASEL

IF4.1

2022-10-28

OAAI

Dinkins, Randy D.; Hancock, Julie A.; Bickhart, Derek M.; Sullivan, Michael L.; Zhu, Hongyan

Assembly of a pangenome for global cattle reveals missing sequences and novel structural variations, providing new insights into their diversity and evolutionary history

GENOME RESEARCH

IF5.5

2022-08-17

OAAI

Zhou, Yang; Yang, Lv; Han, Xiaotao; Han, Jiazheng; Hu, Yan; Li, Fan; Xia, Han; Peng, Lingwei; Boschiero, Clarissa; Rosen, Benjamin D.; Bickhart, Derek M.; Zhang, Shujun; Guo, Aizhen; Van Tassell, Curtis P.; Smith, Timothy P. L.; Yang, Liguo; Liu, George E.

Structural variant-based pangenome construction has low sensitivity to variability of haplotype-resolved bovine assemblies

NATURE COMMUNICATIONS

IF15.7

2022-05-31

OAAI

Leonard, Alexander S.; Crysnanto, Danang; Fang, Zih-Hua; Heaton, Michael P.; Vander Ley, Brian L.; Herrera, Carolina; Bollwein, Heinrich; Bickhart, Derek M.; Kuhn, Kristen L.; Smith, Timothy P. L.; Rosen, Benjamin D.; Pausch, Hubert

Gaur genome reveals expansion of sperm odorant receptors in domesticated cattle

BMC GENOMICS

IF3.7

2022-05-04

OAAI

Low, Wai Yee; Rosen, Benjamin D.; Ren, Yan; Bickhart, Derek M.; To, Thu-Hien; Martin, Fergal J.; Billis, Konstantinos; Sonstegard, Tad S.; Sullivan, Shawn T.; Hiendleder, Stefan; Williams, John L.; Heaton, Michael P.; Smith, Timothy P. L.

An improved ovine reference genome assembly to facilitate in-depth functional annotation of the sheep genome 改进的绵羊参考基因组组装，以促进绵羊基因组的深入功能注释

GIGASCIENCE

IF3.9

2022-02-04

OAAI

Davenport, Kimberly M.; Bickhart, Derek M.; Worley, Kim; Murali, Shwetha C.; Salavati, Mazdak; Clark, Emily L.; Cockett, Noelle E.; Heaton, Michael P.; Smith, Timothy P. L.; Murdoch, Brenda M.; Rosen, Benjamin D.

Generating lineage-resolved, complete metagenome-assembled genomes from complex microbial communities 从复杂的微生物群落中生成谱系解析的完整宏基因组组装的基因组

NATURE BIOTECHNOLOGY

IF41.7

2022-01-03

112

PREAI

Bickhart, Derek M.; Kolmogorov, Mikhail; Tseng, Elizabeth; Portik, Daniel M.; Korobeynikov, Anton; Tolstoganov, Ivan; Uritskiy, Gherman; Liachko, Ivan; Sullivan, Shawn T.; Shin, Sung Bong; Zorea, Alvah; Andreu, Victoria Pascal; Panke-Buisse, Kevin; Medema, Marnix H.; Mizrahi, Itzhak; Pevzner, Pavel A.; Smith, Timothy P. L.

Growth curve, blood parameters and carcass traits of grass-fed Angus steers

ANIMAL

IF4.2

2021-11-01

OAAI

Carrillo, J. A.; Bai, Y.; He, Y.; Li, Y.; Cai, W.; Bickhart, D. M.; Liu, G.; Barao, S. M.; Sonstegard, T.; Song, J.

A Reference Genome Assembly of Simmental Cattle, Bos taurus taurus (vol 112, pg 184, 2021)

JOURNAL OF HEREDITY

IF2.5

2021-08-26

OAAI

Heaton, Michael P.; Smith, Timothy P. L.; Bickhart, Derek M.; Vander Ley, Brian L.; Kuehn, Larry A.; Oppenheimer, Jonas; Shafer, Wade R.; Schuetze, Fred T.; Stroud, Brad; McClure, Jennifer C.; Barfield, Jennifer P.; Blackburn, Harvey D.; Kalbfleisch, Theodore S.; Davenport, Kimberly M.; Kuhn, Kristen L.; Green, Richard E.; Shapiro, Beth; Rosen, Benjamin D.

Development of polymorphic markers in the immune gene complex loci of cattle

JOURNAL OF DAIRY SCIENCE

IF4.4

2021-06-01

OAAI

Bakshy, K.; Heimeier, D.; Schwartz, J. C.; Glass, E. J.; Wilkinson, S.; Skuce, R. A.; Allen, A. R.; Young, J.; McClure, J. C.; Cole, J. B.; Null, D. J.; Hammond, J. A.; Smith, T. P. L.; Bickhart, D. M.

Variants at the ASIP locus contribute to coat color darkening in Nellore cattle

GENETICS SELECTION EVOLUTION

IF3.1

2021-04-28

OAAI

Trigo, Beatriz B.; Utsunomiya, Adam T. H.; Fortunato, Alvaro A. A. D.; Milanesi, Marco; Torrecilha, Rafaela B. P.; Lamb, Harrison; Nguyen, Loan; Ross, Elizabeth M.; Hayes, Ben; Padula, Romulo C. M.; Sussai, Thayla S.; Zavarez, Ludmilla B.; Cipriano, Rafael S.; Caminhas, Maria M. T.; Lopes, Flavia L.; Pelle, Cassiano; Leeb, Tosso; Bannasch, Danika; Bickhart, Derek; Smith, Timothy P. L.; Sonstegard, Tad S.; Garcia, Jose F.; Utsunomiya, Yuri T.

A Reference Genome Assembly of American Bison, Bison bison bison

JOURNAL OF HEREDITY

IF2.5

2021-02-17

OAAI

Oppenheimer, Jonas; Rosen, Benjamin D.; Heaton, Michael P.; Vander Ley, Brian L.; Shafer, Wade R.; Schuetze, Fred T.; Stroud, Brad; Kuehn, Larry A.; McClure, Jennifer C.; Barfield, Jennifer P.; Blackburn, Harvey D.; Kalbfleisch, Theodore S.; Bickhart, Derek M.; Davenport, Kimberly M.; Kuhn, Kristen L.; Green, Richard E.; Shapiro, Beth; Smith, Timothy P. L.

A Reference Genome Assembly of Simmental Cattle, Bos taurus taurus

JOURNAL OF HEREDITY

IF2.5

2021-01-13

OAAI

metaFlye: scalable long-read metagenome assembly using repeat graphs metaFlye: 使用重复图的可扩展长读宏基因组组装

NATURE METHODS

IF32.1

2020-10-05

442

OAAI

Kolmogorov, Mikhail; Bickhart, Derek M.; Behsaz, Bahar; Gurevich, Alexey; Rayko, Mikhail; Shin, Sung Bong; Kuhn, Kristen; Yuan, Jeffrey; Polevikov, Evgeny; Smith, Timothy P. L.; Pevzner, Pavel A.

Validating the Use of Bovine Buccal Sampling as a Proxy for the Rumen Microbiota by Using a Time Course and Random Forest Classification Approach

APPLIED AND ENVIRONMENTAL MICROBIOLOGY

IF3.7

2020-08-18

OAAI

Young, Juliana; Skarlupka, Joseph H.; Cox, Madison S.; Resende, Rafael Tassinari; Fischer, Amelie; Kalscheur, Kenneth F.; McClure, Jennifer C.; Cole, John B.; Suen, Garret; Bickhart, Derek M.

An improved pig reference genome sequence to enable pig genetics and genomics research 一种改进的猪参考基因组序列实现猪遗传学和基因组学研究

GIGASCIENCE

IF3.9

2020-06-16

195

OAAI

Warr, Amanda; Affara, Nabeel; Aken, Bronwen; Beiki, Hamid; Bickhart, Derek M.; Billis, Konstantinos; Chow, William; Eory, Lel; Finlayson, Heather A.; Flicek, Paul; Giron, Carlos G.; Griffin, Darren K.; Hall, Richard; Hannum, Greg; Hourlier, Thibaut; Howe, Kerstin; Hume, David A.; Izuogu, Osagie; Kim, Kristi; Koren, Sergey; Liu, Haibou; Manchanda, Nancy; Martin, Fergal J.; Nonneman, Dan J.; O'Connor, Rebecca E.; Phillippy, Adam M.; Rohrer, Gary A.; Rosen, Benjamin D.; Rund, Laurie A.; Sargent, Carole A.; Schook, Lawrence B.; Schroeder, Steven G.; Schwartz, Ariel S.; Skinner, Ben M.; Talbot, Richard; Tseng, Elizabeth; Tuggle, Christopher K.; Watson, Mick; Smith, Timothy P. L.; Archibald, Alan L.

研究方向