Alexandr A. Kalinin - Publications, H-index & Citations

Alexandr A. Kalinin

MIT and Harvard

19H指数

52论文数

4.1K被引数

收录论文 10

发表时间

Progress and new challenges in image-based profiling 基于图像的谱分析进展与新挑战

Molecular Systems Biology

IF7.7

2026-03-27

OAAI

Erik Serrano; John Peters; Jesko Wagner; Rebecca E Graham; Zhenghao Chen; Brian Y Feng; Gisele Miranda; Alexandr A Kalinin; Loan Vulliard; Jenna Tomkinson; Cameron Mattson; Michael J Lippincott; Ziqi Kang; Divya Sitani; Dave Bunten; Srijit Seal; Neil O Carragher; Anne E Carpenter; Shantanu Singh; Paula A Marin Zapata; Juan C Caicedo; Gregory P Way

Three million images and morphological profiles of cells treated with matched chemical and genetic perturbations 用匹配的化学和遗传扰动处理的细胞的300万张图像和形态特征

NATURE METHODS

IF32.1

2024-04-09

OAAI

Chandrasekaran, Srinivas Niranj; Cimini, Beth A.; Goodale, Amy; Miller, Lisa; Kost-Alimova, Maria; Jamali, Nasim; Doench, John G.; Fritchman, Briana; Skepner, Adam; Melanson, Michelle; Kalinin, Alexandr A.; Arevalo, John; Haghighi, Marzieh; Caicedo, Juan C.; Kuhn, Daniel; Hernandez, Desiree; Berstler, James; Shafqat-Abbasi, Hamdah; Root, David E.; Swalley, Susanne E.; Garg, Sakshi; Singh, Shantanu; Carpenter, Anne E.

Integrating inflammatory biomarker analysis and artificial-intelligence-enabled image-based profiling to identify drug targets for intestinal fibrosis 整合炎症生物标志物分析和基于图像的人工智能分析，以确定肠纤维化的药物靶点

CELL CHEMICAL BIOLOGY

IF7.2

2023-09-01

OAAI

Yu, Shan; Kalinin, Alexandr A.; Paraskevopoulou, Maria D.; Maruggi, Marco; Cheng, Jie; Tang, Jie; Icke, Ilknur; Luo, Yi; Wei, Qun; Scheibe, Dan; Hunter, Joel; Singh, Shantanu; Nguyen, Deborah; Carpenter, Anne E.; Horman, Shane R.

Ten quick tips for deep learning in biology

plos biology

IF3.6

2022-03-24

OAAI

Lee, Benjamin D.; Gitter, Anthony; Greene, Casey S.; Raschka, Sebastian; Maguire, Finlay; Titus, Alexander J.; Kessler, Michael D.; Lee, Alexandra J.; Chevrette, Marc G.; Stewart, Paul Allen; Britto-Borges, Thiago; Cofer, Evan M.; Yu, Kun-Hsing; Carmona, Juan Jose; Fertig, Elana J.; Kalinin, Alexandr A.; Signal, Brandon; Lengerich, Benjamin J.; Triche Jr, Timothy J.; Boca, Simina M.

3D convolutional neural networks for stalled brain capillary detection

COMPUTERS IN BIOLOGY AND MEDICINE

IF6.3

2022-02-01

OAAI

Solovyev, Roman; Kalinin, Alexandr A.; Gabruseva, Tatiana

Valproic acid-induced changes of 4D nuclear morphology in astrocyte cells

MOLECULAR BIOLOGY OF THE CELL

IF2.7

2021-08-19

OAAI

Kalinin, Alexandr A.; Hou, Xinhai; Ade, Alex S.; Fon, Gordon-Victor; Meixner, Walter; Higgins, Gerald A.; Sexton, Jonathan Z.; Wan, Xiang; Dinov, Ivo D.; O'Meara, Matthew J.; Athey, Brian D.

3D Shape Modeling for Cell Nuclear Morphological Analysis and Classification (vol 8, 13658, 2018

SCIENTIFIC REPORTS

IF3.9

2018-10-26

OAAI

Kalinin, Alexandr A.; Allyn-Feuer, Ari; Ade, Alex; Fon, Gordon-Victor; Meixner, Walter; Dilworth, David; Husain, Syed S.; de Wet, Jeffrey R.; Higgins, Gerald A.; Zheng, Gen; Creekmore, Amy; Wiley, John W.; Verdone, James E.; Veltri, Robert W.; Pienta, Kenneth J.; Coffey, Donald S.; Athey, Brian D.; Dinov, Ivo D.

3D Shape Modeling for Cell Nuclear Morphological Analysis and Classification 用于细胞核形态分析和分类的三维形状建模

SCIENTIFIC REPORTS

IF3.9

2018-09-12

OAAI

Kalinin, Alexandr A.; Allyn-Feuer, Ari; Ade, Alex; Fon, Gordon-Victor; Meixner, Walter; Dilworth, David; Husain, Syed S.; de Wett, Jeffrey R.; Higgins, Gerald A.; Zheng, Gen; Creekmore, Amy; Wiley, John W.; Verdone, James E.; Veltri, Robert W.; Pienta, Kenneth J.; Coffey, Donald S.; Athey, Brian D.; Dinov, Ivo D.

Model-based and Model-free Machine Learning Techniques for Diagnostic Prediction and Classification of Clinical Outcomes in Parkinson's Disease

SCIENTIFIC REPORTS

IF3.9

2018-05-08

122

OAAI

Gao, Chao; Sun, Hanbo; Wang, Tuo; Tang, Ming; Bohnen, Nicolaas I.; Muller, Martijn L. T. M.; Herman, Talia; Giladi, Nir; Kalinin, Alexandr; Spino, Cathie; Dauer, William; Hausdorff, Jeffrey M.; Dinov, Ivo D.

Opportunities and obstacles for deep learning in biology and medicine 生物学和医学深度学习的机遇和障碍

JOURNAL OF THE ROYAL SOCIETY INTERFACE

IF3.5

2018-04-04

1.3K

OAAI

Ching, Travers; Himmelstein, Daniel S.; Beaulieu-Jones, Brett K.; Kalinin, Alexandr A.; Do, Brian T.; Way, Gregory P.; Ferrero, Enrico; Agapow, Paul-Michael; Zietz, Michael; Hoffman, Michael M.; Xie, Wei; Rosen, Gail L.; Lengerich, Benjamin J.; Israeli, Johnny; Lanchantin, Jack; Woloszynek, Stephen; Carpenter, Anne E.; Shrikumar, Avanti; Xu, Jinbo; Cofer, Evan M.; Lavender, Christopher A.; Turaga, Srinivas C.; Alexandari, Amr M.; Lu, Zhiyong; Harris, David J.; DeCaprio, Dave; Qi, Yanjun; Kundaje, Anshul; Peng, Yifan; Wiley, Laura K.; Segler, Marwin H. S.; Boca, Simina M.; Swamidass, S. Joshua; Huang, Austin; Gitter, Anthony; Greene, Casey S.

研究方向