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S

Siavash Mirarab

University of California

53H指数
211论文数
2.5W被引数
收录论文 59
发表时间
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Phylogenomics beyond the ‘bag-of-genes’ model超越‘基因袋’模型的系统发育基因组学
errTrends in Genetics
IF16.3
err2026-05-27
err0
PREAI
errIker Rivas-González; Siavash Mirarab; Edward L. Braun
err分享
err收藏
SPrUCE: Utilizing Ultraconserved Elements of DNA for Population-Level Genetic Diversity EstimationSPrUCE: 利用DNA中的超保守元件进行群体水平遗传多样性估算
errMolecular Ecology Resources
IF5.5
err2026-04-23
err0
errOAAI
errMelendez, Daira; Sapci, Ali Osman Berk; Bafna, Vineet; Mirarab, Siavash
err分享
err收藏
Species Tree Branch Length Estimation despite Incomplete Lineage Sorting, Duplication, and Loss尽管存在谱系未完全分化、基因重复和丢失，物种树分支长度估计
errGENOME BIOLOGY AND EVOLUTION
IF2.8
err2025-11-01
err0
PREAI
errTabatabaee, Yasamin; Zhang, Chao; Arasti, Shayesteh; Mirarab, Siavash
err分享
err收藏
Machine Learning Enables Alignment-Free Distance Calculation and Phylogenetic Placement Using k-Mer Frequencies机器学习实现了基于k-mer频率的无序列比对距离计算和系统发育定位
errMolecular Ecology Resources
IF5.5
err2025-10-12
err0
errOAAI
errEleonora Rachtman; Yueyu Jiang; Siavash Mirarab
err分享
err收藏
ASTER: A Package for Large-Scale Phylogenomic ReconstructionsASTER: 一个用于大规模系统发育基因组重建的软件包
errMOLECULAR BIOLOGY AND EVOLUTION
IF5.3
err2025-08-01
err6
errOAAI
errZhang, Chao; Nielsen, Rasmus; Mirarab, Siavash
err分享
err收藏
Accurate, scalable, and fully automated inference of species trees from raw genome assemblies using ROADIES使用ROADIES从原始基因组组装中精确、可扩展且完全自动化地推断物种系统发育树
errPROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
IF9.1
err2025-05-02
err1
errOAAI
errGupta, Anshu; Mirarab, Siavash; Turakhia, Yatish
err分享
err收藏
CASTER: Direct species tree inference from whole-genome alignmentsCASTER：直接从全基因组比对中推断物种树
errSCIENCE
IF45.8
err2025-02-28
err2
errOAAI
errZhang, C; Nielsen, R; Mirarab, S
err分享
err收藏
Net rate of lateral gene transfer in marine prokaryoplankton海洋原核浮游生物的水平基因转移净速率
errISME JOURNAL
IF10
err2025-01-01
err0
errOAAI
errStepanauskas, Ramunas; Brown, Julia M.; Arasti, Shayesteh; Mai, Uyen; Gavelis, Gregory; Pachiadaki, Maria; Bezuidt, Oliver; Munson-McGee, Jacob H.; Chang, Tianyi; Biller, Steven J.; Berube, Paul M.; Mirarab, Siavash
err分享
err收藏
Expectation-Maximization enables Phylogenetic Dating under a Categorical Rate Model
errSYSTEMATIC BIOLOGY
IF5.7
err2024-07-05
err0
errOAAI
errMai, Uyen; Charvel, Eduardo; Mirarab, Siavash
err分享
err收藏
A region of suppressed recombination misleads neoavian phylogenomics
errPROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
IF9.1
err2024-04-01
err3
errOAAI
errMirarab, Siavash; Rivas-Gonzalez, Iker; Feng, Shaohong; Stiller, Josefin; Fang, Qi; Mai, Uyen; Hickey, Glenn; Chen, Guangji; Brajuka, Nadolina; Fedrigo, Olivier; Formenti, Giulio; Wolf, Jochen B. W.; Howe, Kerstin; Antunes, Agostinho; Schierup, Mikkel H.; Paten, Benedict; Jarvis, Erich D.; Zhang, Guojie; Braun, Edward L.
err分享
err收藏
Generation of accurate, expandable phylogenomic trees with uDance (Jul, 10.1038/s41587, 2023)
errNATURE BIOTECHNOLOGY
IF41.7
err2023-10-18
err0
errOAAI
errBalaban, Metin; Jiang, Yueyu; Zhu, Qiyun; McDonald, Daniel; Knight, Rob; Mirarab, Siavash
err分享
err收藏
Greengenes2 unifies microbial data in a single reference tree (Jul, 10.1038/s41587-023-01845-1, 2023)Greengenes2将微生物数据统一在一个参考树中 (7月，10.1038/s41587-023-01845-1，2023)
errNATURE BIOTECHNOLOGY
IF41.7
err2023-10-18
err1
errOAAI
errMcDonald, Daniel; Jiang, Yueyu; Balaban, Metin; Cantrell, Kalen; Zhu, Qiyun; Gonzalez, Antonio; Morton, James T.; Nicolaou, Giorgia; Parks, Donovan H.; Karst, Soren M.; Albertsen, Mads; Hugenholtz, Philip; DeSantis, Todd; Song, Se Jin; Bartko, Andrew; Havulinna, Aki S.; Jousilahti, Pekka; Cheng, Susan; Inouye, Michael; Niiranen, Teemu; Jain, Mohit; Salomaa, Veikko; Lahti, Leo; Mirarab, Siavash; Knight, Rob
err分享
err收藏
Greengenes2 unifies microbial data in a single reference treeGreengenes2将微生物数据统一在一个参考树中
errNATURE BIOTECHNOLOGY
IF41.7
err2023-07-27
err94
errOAAI
errMcDonald, Daniel; Jiang, Yueyu; Balaban, Metin; Cantrell, Kalen; Zhu, Qiyun; Gonzalez, Antonio; Morton, James T. T.; Nicolaou, Giorgia; Parks, Donovan H. H.; Karst, Soren M.; Albertsen, Mads; Hugenholtz, Philip; DeSantis, Todd; Song, Se Jin; Bartko, Andrew; Havulinna, Aki S. S.; Jousilahti, Pekka; Cheng, Susan; Inouye, Michael; Niiranen, Teemu; Jain, Mohit; Salomaa, Veikko; Lahti, Leo; Mirarab, Siavash; Knight, Rob
err分享
err收藏
Generation of accurate, expandable phylogenomic trees with uDance
errNATURE BIOTECHNOLOGY
IF41.7
err2023-07-27
err4
PREAI
errBalaban, Metin; Jiang, Yueyu; Zhu, Qiyun; McDonald, Daniel; Knight, Rob; Mirarab, Siavash
err分享
err收藏
A scalable model for simulating multi-round antibody evolution and benchmarking of clonal tree reconstruction methods
errFRONTIERS IN IMMUNOLOGY
IF5.9
err2022-12-06
err5
errOAAI
errZhang, Chao; Bzikadze, Andrey V.; Safonova, Yana; Mirarab, Siavash
err分享
err收藏
Weighting by Gene Tree Uncertainty Improves Accuracy of Quartet-based Species Trees
errMOLECULAR BIOLOGY AND EVOLUTION
IF5.3
err2022-10-06
err46
errOAAI
errZhang, Chao; Mirarab, Siavash
err分享
err收藏
Quantifying the uncertainty of assembly-free genome-wide distance estimates and phylogenetic relationships using subsampling
errCELL SYSTEMS
IF7.7
err2022-10-01
err3
errOAAI
errRachtman, Eleonora; Sarmashghi, Shahab; Bafna, Vineet; Mirarab, Siavash
err分享
err收藏
Learning Hyperbolic Embedding for Phylogenetic Tree Placement and Updates用于系统发育树放置和更新的学习双曲线嵌入
errBIOLOGY-BASEL
IF3.5
err2022-08-24
err8
errOAAI
errJiang, Yueyu; Tabaghi, Puoya; Mirarab, Siavash
err分享
err收藏
Distance-Based Phylogenetic Placement with Statistical Support
errBIOLOGY-BASEL
IF3.5
err2022-08-12
err0
errOAAI
errBin Hasan, Navid; Balaban, Metin; Biswas, Avijit; Bayzid, Md Shamsuzzoha; Mirarab, Siavash
err分享
err收藏
DEPP: Deep Learning Enables Extending Species Trees using Single Genes
errSYSTEMATIC BIOLOGY
IF5.7
err2022-04-29
err13
errOAAI
errJiang, Yueyu; Balaban, Metin; Zhu, Qiyun; Mirarab, Siavash
err分享
err收藏

研究方向

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合作学者
合作期刊
R
Rob Knight
H 指数: 255 · 论文数: 1.8K
王
王军 (Jun Wang)
H 指数: 222 · 论文数: 3.2K
P
Pamela S. Soltis
H 指数: 193 · 论文数: 1.5K
R
Rasmus Nielsen
H 指数: 151 · 论文数: 525
C
Curtis Huttenhower
H 指数: 142 · 论文数: 639
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