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Rolf Sommer Kaas

European Bioinformatics Institute

26H指数
74论文数
1.1W被引数
收录论文 25
发表时间
Analysis of genetic signatures of virulence and resistance in foodborne Staphylococcus aureus isolates from Algeria
err2024-10-01
err0
errOAAI
errChouaib, Nour El Houda; Benhamed, Nadjia; Kaas, Rolf Sommer; Otani, Saria; Benyettou, Imene; Bekki, Abdelkade; Hansen, Egon Bech
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Global within-species phylogenetics of sewage microbes suggest that local adaptation shapes geographical bacterial clustering
err2023-07-08
err3
errOAAI
errJespersen, Marie Louise; Munk, Patrick; Johansen, Joachim; Kaas, Rolf Sommer; Webel, Henry; Vigre, Hakan; Nielsen, Henrik Bjorn; Rasmussen, Simon; Aarestrup, Frank M.
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Exploring the Inhibitory Activity of Selected Lactic Acid Bacteria against Bread Rope Spoilage Agents
err2023-03-16
err8
errOAAI
errIosca, Giovanna; Fugaban, Joanna Ivy Irorita; oezmerih, Sueleyman; Waetjen, Anders Peter; Kaas, Rolf Sommer; Ha, Quoc; Shetty, Radhakrishna; Pulvirenti, Andrea; De Vero, Luciana; Bang-Berthelsen, Claus Heiner
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ResFinder-an open online resource for identification of antimicrobial resistance genes in next- generation sequencing data and prediction of phenotypes from genotypes
err2022-01-17
err337
errOAAI
errFlorensa, Alfred Ferrer; Kaas, Rolf Sommer; Clausen, Philip Thomas Lanken Conradsen; Aytan-Aktug, Derya; Aarestrup, Frank M.
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Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns
err2021-10-31
err38
errOAAI
errPoulsen, Casper Sahl; Kaas, Rolf Sommer; Aarestrup, Frank M.; Pamp, Sunje Johanna
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ResFinder 4.0 for predictions of phenotypes from genotypes用于从基因型预测表型的ResFinder 4.0
err2020-08-11
err1.9K
errOAAI
errBortolaia, Valeria; Kaas, Rolf S.; Ruppe, Etienne; Roberts, Marilyn C.; Schwarz, Stefan; Cattoir, Vincent; Philippon, Alain; Allesoe, Rosa L.; Rebelo, Ana Rita; Florensa, Alfred Ferrer; Fagelhauer, Linda; Chakraborty, Trinad; Neumann, Bernd; Werner, Guido; Bender, Jennifer K.; Stingl, Kerstin; Minh Nguyen; Coppens, Jasmine; Xavier, Basil Britto; Malhotra-Kumar, Surbhi; Westh, Henrik; Pinholt, Mette; Anjum, Muna F.; Duggett, Nicholas A.; Kempf, Isabelle; Nykasenoja, Suvi; Olkkola, Satu; Wieczorek, Kinga; Amaro, Ana; Clemente, Lurdes; Mossong, Joel; Losch, Serge; Ragimbeau, Catherine; Lund, Ole; Aarestrup, Frank M.
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Addressing Learning Needs on the Use of Metagenomics in Antimicrobial Resistance Surveillance解决在抗菌素耐药性监测中使用宏基因组学的学习需求
err2020-02-25
err15
errOAAI
errDuarte, Ana Sofia Ribeiro; Stark, Katharina D. C.; Munk, Patrick; Leekitcharoenphon, Pimlapas; Bossers, Alex; Luiken, Roosmarijn; Sarrazin, Steven; Lukjancenko, Oksana; Pamp, Sunje Johanna; Bortolaia, Valeria; Nissen, Jakob Nybo; Kirstahler, Philipp; Van Gompel, Liese; Poulsen, Casper Sahl; Kaas, Rolf Sommer; Hellmer, Maria; Hansen, Rasmus Borup; Gomez, Violeta Munoz; Hald, Tine
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The COMPARE Data Hubs
err2019-12-23
err27
errOAAI
errAmid, Clara; Pakseresht, Nima; Silvester, Nicole; Jayathilaka, Suran; Lund, Ole; Dynovski, Lukasz D.; Pataki, Balint A.; Visontai, David; Xavier, Basil Britto; Alako, Blaise T. F.; Belka, Ariane; Cisneros, Jose L. B.; Cotten, Matthew; Haringhuizen, George B.; Harrison, Peter W.; Hoper, Dirk; Holt, Sam; Hundahl, Camilla; Hussein, Abdulrahman; Kaas, Rolf S.; Liu, Xin; Leinonen, Rasko; Malhotra-Kumar, Surbhi; Nieuwenhuijse, David F.; Rahman, Nadim; Ribeiro, Carolina dos S.; Skiby, Jeffrey E.; Schmitz, Dennis; Steger, Jozsef; Szalai-Gindl, Janos M.; Thomsen, Martin C. F.; Caccio, Simone M.; Csabai, Istvan; Kroneman, Annelies; Koopmans, Marion; Aarestrup, Frank; Cochrane, Guy
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Worldwide human mitochondrial haplogroup distribution from urban sewage来自城市污水的全球人类线粒体单倍群分布
err2019-08-12
err14
errOAAI
errPipek, Orsolya Anna; Medgyes-Horvath, Anna; Dobos, Laszlo; Steger, Jozsef; Szalai-Gindl, Janos; Visontai, David; Kaas, Rolf S.; Koopmans, Marion; Hendriksen, Rene S.; Aarestrup, Frank M.; Csabai, Istvan
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Global monitoring of antimicrobial resistance based on metagenomics analyses of urban sewage基于城市污水宏基因组分析的全球抗菌素耐药性监测
err2019-03-08
err614
errOAAI
errHendriksen, Rene S.; Munk, Patrick; Njage, Patrick; van Bunnik, Bram; McNally, Luke; Lukjancenko, Oksana; Roder, Timo; Nieuwenhuijse, David; Pedersen, Susanne Karlsmose; Kjeldgaard, Jette; Kaas, Rolf S.; Clausen, Philip Thomas Lanken Conradsen; Vogt, Josef Korbinian; Leekitcharoenphon, Pimlapas; van de Schans, Milou G. M.; Zuidema, Tina; Husman, Ana Maria de Roda; Rasmussen, Simon; Petersen, Bent; Amid, Clara; Cochrane, Guy; Sicheritz-Ponten, Thomas; Schmitt, Heike; Alvarez, Jorge Raul Matheu; Aidara-Kane, Awa; Pamp, Sunje J.; Lund, Ole; Hald, Tine; Woolhouse, Mark; Koopmans, Marion P.; Vigre, Hakan; Petersen, Thomas Nordahl; Aarestrup, Frank M.; Bego, Artan; Rees, Catherine; Cassar, Susan; Coventry, Kris; Collignon, Peter; Allerberger, Franz; Rahube, Teddie O.; Oliveira, Guilherme; Ivanov, Ivan; Vuthy, Yith; Sopheak, Thet; Yost, Christopher K.; Ke, Changwen; Zheng, Huanying; Li Baisheng; Jiao, Xiaoyang; Donado-Godoy, Pilar; Coulibaly, Kalpy Julien; Jergovic, Matijana; Hrenovic, Jasna; Karpiskova, Renata; Eduardo Villacis, Jose; Legesse, Mengistu; Eguale, Tadesse; Heikinheimo, Annamari; Malania, Lile; Nitsche, Andreas; Brinkmann, Annika; Saba, Courage Kosi Setsoafia; Kocsis, Bela; Solymosi, Norbert; Thorsteinsdottir, Thorunn R.; Hatha, Abdulla Mohamed; Alebouyeh, Masoud; Morris, Dearbhaile; Cormican, Martin; O'Connor, Louise; Moran-Gilad, Jacob; Alba, Patricia; Battisti, Antonio; Shakenova, Zeinegul; Kiiyukia, Ciira; Ng'eno, Eric; Raka, Lul; Avsejenko, Jelena; Berzins, Aivars; Bartkevics, Vadims; Penny, Christian; Rajandas, Heraa; Parimannan, Sivachandran; Haber, Malcolm Vella; Pal, Pushkar; Jeunen, Gert-Jan; Gemmell, Neil; Fashae, Kayode; Holmstad, Rune; Hasan, Rumina; Shakoor, Sadia; Rojas, Maria Luz Zamudio; Wasyl, Dariusz; Bosevska, Golubinka; Kochubovski, Mihail; Radu, Cojocaru; Gassama, Amy; Radosavljevic, Vladimir; Wuertz, Stefan; Zuniga-Montanez, Rogelio; Tay, Moon Y. F.; Gavacova, Dagmar; Pastuchova, Katarina; Truska, Peter; Trkov, Marija; Esterhuyse, Kerneels; Keddy, Karen; Cerda-Cuellar, Marta; Pathirage, Sujatha; Norrgren, Leif; Orn, Stefan; Larsson, D. G. Joakim; Van der Heijden, Tanja; Kumburu, Happiness Houka; Sanneh, Bakary; Bidjada, Pawou; Njanpop-Lafourcade, Berthe-Marie; Nikiema-Pessinaba, Somtinda Christelle; Levent, Belkis; Meschke, John Scott; Beck, Nicola Koren; Chinh Dang Van; Nguyen Do Phuc; Doan Minh Nguyen Tran; Kwenda, Geoffrey; Tabo, Djim-Adjim; Wester, Astrid Louise; Cuadros-Orellana, Sara
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An Assessment of Different Genomic Approaches for Inferring Phylogeny of Listeria monocytogenes对推断单核细胞增生李斯特菌系统发育的不同基因组方法的评估
err2017-11-29
err55
errOAAI
errHenri, Clementine; Leekitcharoenphon, Pimlapas; Carleton, Heather A.; Radomski, Nicolas; Kaas, Rolf S.; Mariet, Jean-Francois; Felten, Arnaud; Aarestrup, Frank M.; Smidt, Peter Gerner; Roussel, Sophie; Guillier, Laurent; Mistou, Michel-Yves; Hendriksen, Rene S.
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First detection of linezolid resistance due to the optrA gene in enterococci isolated from food products in Denmark
err2017-06-01
err24
PREAI
errCavaco, L. M.; Korsgaard, H.; Kaas, R. S.; Seyfarth, A. M.; Leekitcharoenphon, P.; Hendriksen, R. S.
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Evaluating next-generation sequencing for direct clinical diagnostics in diarrhoeal disease (vol 36, pg 1325, 2017)
err2017-05-09
err0
errOAAI
errJoensen, K. G.; Engsbro, A. L. O.; Lukjancenko, O.; Kaas, R. S.; Lund, O.; Westh, H.; Aarestrup, F. M.
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Evaluating next-generation sequencing for direct clinical diagnostics in diarrhoeal disease
err2017-03-11
err39
errOAAI
errJoensen, K. G.; Engsbro, A. L. O.; Lukjancenko, O.; Kaas, R. S.; Lund, O.; Westh, H.; Aarestrup, F. M.
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Is the Evolution of Salmonella enterica subsp. enterica Linked to Restriction-Modification Systems?是肠道沙门氏菌亚种的进化。enterica与限制修改系统有关?
err2016-06-28
err100
errOAAI
errRoer, Louise; Hendriksen, Rene S.; Leekitcharoenphon, Pimlapas; Lukjancenko, Oksana; Kaas, Rolf Sommer; Hasman, Henrik; Aarestrup, Frank M.
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Fatal Septicemia Linked to Transmission of MRSA Clonal Complex 398 in Hospital and Nursing Home, Denmark丹麦医院和疗养院中与MRSA克隆复合物398传播有关的致命败血症
err2016-05-01
err19
errOAAI
errNielsen, Rikke Thoft; Kemp, Michael; Holm, Anette; Skov, Marianne Nielsine; Detlefsen, Mette; Hasman, Henrik; Aarestrup, Frank Moller; Kaas, Rolf Sommer; Nielsen, Jesper Boye; Westh, Henrik; Kolmos, Hans Jorn
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Detection of mcr-1 encoding plasmid-mediated colistin-resistant Escherichia coli isolates from human bloodstream infection and imported chicken meat, Denmark 2015
err2015-12-10
err297
errOAAI
errHasman, H.; Hammerum, A. M.; Hansen, F.; Hendriksen, R. S.; Olesen, B.; Agerso, Y.; Zankari, E.; Leekitcharoenphon, P.; Stegger, M.; Kaas, R. S.; Cavaco, L. M.; Hansen, D. S.; Aarestrup, F. M.; Skov, R. L.
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Genomic Dissection of Travel-Associated Extended-Spectrum-Beta-Lactamase-Producing Salmonella enterica Serovar Typhi Isolates Originating from the Philippines: a One-Off Occurrence or a Threat to Effective Treatment of Typhoid Fever?来自菲律宾的与旅行相关的产超广谱 β-内酰胺酶的肠炎沙门氏菌分离株的基因组解剖: 一次性发生还是对有效治疗伤寒发热的威胁?
err2015-02-01
err20
errOAAI
errHendriksen, Rene S.; Leekitcharoenphon, Pimlapas; Mikoleit, Matthew; Jensen, Jacob Dyring; Kaas, Rolf Sommer; Roer, Louise; Joshi, Heena B.; Pornruangmong, Srirat; Pulsrikarn, Chaiwat; Gonzalez-Aviles, Gladys D.; Reuland, E. Ascelijn; Al Naiemi, Nashwan; Wester, Astrid Louise; Aarestrup, Frank M.; Hasman, Henrik
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Genomic Signature of Multidrug-Resistant Salmonella enterica Serovar Typhi Isolates Related to a Massive Outbreak in Zambia between 2010 and 2012与赞比亚2010年和2012大规模暴发有关的多药耐药肠炎沙门氏菌血清型伤寒分离株的基因组特征
err2015-01-01
err75
errOAAI
errHendriksen, Rene S.; Leekitcharoenphon, Pimlapas; Lukjancenko, Oksana; Lukwesa-Musyani, Chileshe; Tambatamba, Bushimbwa; Mwaba, John; Kalonda, Annie; Nakazwe, Ruth; Kwenda, Geoffrey; Jensen, Jacob Dyring; Svendsen, Christina A.; Dittmann, Karen K.; Kaas, Rolf S.; Cavaco, Lina M.; Aarestrup, Frank M.; Hasman, Henrik; Mwansa, James C. L.
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Identification and assembly of genomes and genetic elements in complex metagenomic samples without using reference genomes在不使用参考基因组的情况下,在复杂的宏基因组样品中鉴定和组装基因组和遗传元件
err2014-07-06
err849
PREAI
errNielsen, H. Bjorn; Almeida, Mathieu; Juncker, Agnieszka Sierakowska; Rasmussen, Simon; Li, Junhua; Sunagawa, Shinichi; Plichta, Damian R.; Gautier, Laurent; Pedersen, Anders G.; Le Chatelier, Emmanuelle; Pelletier, Eric; Bonde, Ida; Nielsen, Trine; Manichanh, Chaysavanh; Arumugam, Manimozhiyan; Batto, Jean-Michel; dos Santos, Marcelo B. Quintanilha; Blom, Nikolaj; Borruel, Natalia; Burgdorf, Kristoffer S.; Boumezbeur, Fouad; Casellas, Francesc; Dore, Joel; Dworzynski, Piotr; Guarner, Francisco; Hansen, Torben; Hildebrand, Falk; Kaas, Rolf S.; Kennedy, Sean; Kristiansen, Karsten; Kultima, Jens Roat; Leonard, Pierre; Levenez, Florence; Lund, Ole; Moumen, Bouziane; Le Paslier, Denis; Pons, Nicolas; Pedersen, Oluf; Prifti, Edi; Qin, Junjie; Raes, Jeroen; Sorensen, Soren; Tap, Julien; Tims, Sebastian; Ussery, David W.; Yamada, Takuji; Renault, Pierre; Sicheritz-Ponten, Thomas; Bork, Peer; Wang, Jun; Brunak, Soren; Ehrlich, S. Dusko
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